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Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Sequence Clustering and Redundancy Reduction Results
4JI8
Cluster # 40 Members. Sequence cutoff: 90% Cluster size: 196 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4W2F 4 AD, CD 30S Ribosomal Protein S4 300852  
2 4W2G 4 AD, CD 30S Ribosomal Protein S4 300852  
3 4LFB 4 D ribosomal protein S4 300852  
4 1VY4 4 AD, CD 30S ribosomal protein S4 300852  
5 4W2I 4 AD, CD 30S Ribosomal Protein S4 300852  
6 1VY5 4 AD, CD 30S ribosomal protein S4 300852  
7 4WQF 37 BD, DD 30S ribosomal protein S4 300852  
8 4W2H 4 AD, CD 30S Ribosomal Protein S4 300852  
9 4WPO 37 BD, DD 30S ribosomal protein S4 300852  
10 4V8I 4 AD, CD 30S Ribosomal Protein S4 274  
11 4JI1 4 D RIBOSOMAL PROTEIN S4 300852  
12 4DR6 4 D 30S ribosomal protein S4 300852  
13 4LF7 4 D ribosomal protein S4 300852  
14 4LF8 4 D ribosomal protein S4 300852  
15 4WQU 37 BD, DD 30S ribosomal protein S4 300852  
16 2VQE 4 D 30S RIBOSOMAL PROTEIN S4 300852  
17 2UUB 4 D 30S RIBOSOMAL PROTEIN S4 300852  
18 4DV6 4 D ribosomal protein S4 300852  
19 4JYA 4 D 30S ribosomal protein S4 300852  
20 4DR5 4 D 30S ribosomal protein S4 300852  
21 4KHP 4 D 30S Ribosomal protein S4 300852  
22 4DR2 4 D 30S ribosomal protein S4 300852  
23 4LF9 4 D ribosomal protein S4 300852  
24 4WQY 37 BD, DD 30S ribosomal protein S4 300852  
25 4DUY 4 D ribosomal protein S4 300852  
26 4DV7 4 D ribosomal protein S4 300852  
27 4V9H 17 AD 30S ribosomal protein S4 300852  
28 4V8D 4 AG, CG 30S RIBOSOMAL PROTEIN S4 300852  
29 4DR3 4 D 30S ribosomal protein S4 300852  
30 4V90 4 AD 30S RIBOSOMAL PROTEIN S4 300852  
31 4JI3 4 D RIBOSOMAL PROTEIN S4 300852  
32 4JI6 4 D RIBOSOMAL PROTEIN S4 300852  
33 4JI8 4 D RIBOSOMAL PROTEIN S4 300852  
34 2UXC 4 D RIBOSOMAL PROTEIN S4 300852  
35 4V9R 4 AD, CD 30S Ribosomal Protein S4 274  
36 4B3M 4 D 30S RIBOSOMAL PROTEIN S4 300852  
37 4LF4 4 D ribosomal protein S4 300852  
38 4LF6 4 D ribosomal protein S4 300852  
39 4JI7 4 D RIBOSOMAL PROTEIN S4 300852  
40 4B3T 4 D 30S RIBOSOMAL PROTEIN S4 300852  
41 4V8B 4 AG, CG 30S RIBOSOMAL PROTEIN S4 300852  
42 2VQF 4 D 30S RIBOSOMAL PROTEIN S4 300852  
43 2UUA 4 D 30S RIBOSOMAL PROTEIN S4 300852  
44 4V87 34 BG, CG 30S RIBOSOMAL PROTEIN S4 300852  
45 4V95 4 AD, CD 30S Ribosomal Protein S4 274  
46 1VY7 4 AD, CD 30S ribosomal protein S4 300852  
47 4B3R 4 D 30S RIBOSOMAL PROTEIN S4 300852  
48 4LNT 4 QD, XD 30S ribosomal protein S4 300852  
49 4DR1 4 D 30S ribosomal protein S4 300852  
50 4LFA 4 D ribosomal protein S4 300852  
51 4DV4 4 D ribosomal protein S4 300852  
52 4JI0 4 D ribosomal protein S4 300852  
53 4V9S 4 AD, CD 30S Ribosomal Protein S4 274  
54 4JI2 4 D RIBOSOMAL PROTEIN S4 300852  
55 4JV5 4 D 30S ribosomal protein S4 300852  
56 4DR7 4 D 30S ribosomal protein S4 300852  
57 1J5E 4 D 30S RIBOSOMAL PROTEIN S4 274  
58 4GKK 4 D 30S ribosomal protein S4 300852  
59 4DUZ 4 D ribosomal protein S4 300852  
60 4V8G 4 AD, CD 30S Ribosomal Protein S4 300852  
61 4GKJ 4 D 30S ribosomal protein S4 300852  
62 4DV3 4 D ribosomal protein S4 300852  
63 4DV5 4 D ribosomal protein S4 300852  
64 2UUC 4 D 30S RIBOSOMAL PROTEIN S4 300852  
65 4LFC 4 D ribosomal protein S4 300852  
66 1FJG 5 D 30S RIBOSOMAL PROTEIN S4 274  
67 3T1Y 4 D 30S ribosomal protein S4 300852  
68 4JI4 4 D RIBOSOMAL PROTEIN S4 300852  
69 1VY6 4 AD, CD 30S ribosomal protein S4 300852  
70 1XMQ 6 D 30S Ribosomal Protein S4 274  
71 4DV0 4 D ribosomal protein S4 300852  
72 4V9B 4 AG, CG 30S RIBOSOMAL PROTEIN S4 300852  
73 4V6F 34 BG, CG 30S ribosomal protein S4 300852  
74 4V8F 34 BG, CG 30S RIBOSOMAL PROTEIN S4 300852  
75 4B3S 4 D 30S RIBOSOMAL PROTEIN S4 300852  
76 4DV2 4 D ribosomal protein S4 300852  
77 4DV1 4 D ribosomal protein S4 300852  
78 1N32 6 D 30S RIBOSOMAL PROTEIN S4 274  
79 1I94 4 D 30S RIBOSOMAL PROTEIN S4 274  
80 4V8H 4 AD, CD 30S Ribosomal Protein S4 300852  
81 4JI5 4 D RIBOSOMAL PROTEIN S4 300852  
82 4K0K 4 D 30S ribosomal protein S4 300852  
83 4W2E 37 d 30S ribosomal protein S4 300852  
84 4V8C 34 CG, DG 30S RIBOSOMAL PROTEIN S4 300852  
85 4LF5 4 D ribosomal protein S4 300852  
86 4V9A 4 AG, CG 30S RIBOSOMAL PROTEIN S4 300852  
87 4V5J 4 AD, CD 30S RIBOSOMAL PROTEIN S4 300852  
88 4V7Y 4 AD, CD 30S ribosomal protein S4 300852  
89 4V8E 34 BG, DG 30S RIBOSOMAL PROTEIN S4 300852  
90 4DR4 4 D 30S ribosomal protein S4 300852  
91 3OTO 4 D 30S RIBOSOMAL PROTEIN S4 300852  
92 2UU9 4 D 30S RIBOSOMAL PROTEIN S4 300852  
93 4V8Q 38 BD 30S RIBOSOMAL PROTEIN S4 300852  
94 1HR0 5 D 30S RIBOSOMAL PROTEIN S4 274  
95 4AQY 4 D 30S RIBOSOMAL PROTEIN S4 274  
96 4NXM 4 D ribosomal protein S4 300852  
97 4V5L 4 AD 30S RIBOSOMAL PROTEIN S4 300852  
98 4V7X 4 AD, CD 30S ribosomal protein S4 300852  
99 1IBL 7 D 30S RIBOSOMAL PROTEIN S4 274  
100 4V7W 4 AD, CD 30S ribosomal protein S4 300852  
101 4WUS 5 D 30S ribosomal protein S4 300852  
102 4WT8 4 D 30S ribosomal protein S4 300852  
103 4NXN 4 D ribosomal protein S4 300852  
104 1XNR 6 D 16S Ribosomal protein S4 274  
105 4LT8 4 QD, XD 30S ribosomal protein S4 300852  
106 4V51 4 AD, CD 30S RIBOSOMAL PROTEIN S4 300852  
107 4V7L 4 AD, CD 30S ribosomal protein S4 300852  
108 4V5R 4 AD, CD 30S RIBOSOMAL PROTEIN S4 300852  
109 1HNZ 5 D 30S RIBOSOMAL PROTEIN S4 274  
110 1XNQ 6 D Ribosomal protein S4 274  
111 4V8A 34 CD, DD 30S ribosomal protein S4 300852  
112 4V5K 4 AD, CD 30S RIBOSOMAL PROTEIN S4 300852  
113 4V5Q 4 AD, CD 30S RIBOSOMAL PROTEIN S4 300852  
114 4V7J 3 Ad, Bd 30S ribosomal protein S4 300852  
115 4V5C 4 AD, CD 30S RIBOSOMAL PROTEIN S4 300852  
116 4V5E 4 AD, CD 30S RIBOSOMAL PROTEIN S4 300852  
117 4L47 4 QD, XD 30S ribosomal protein S4 300852  
118 4V5P 4 AD, CD 30S RIBOSOMAL PROTEIN S4 300852  
119 4V5D 4 AD, CD 30S RIBOSOMAL PROTEIN S4 300852  
120 4V7Z 4 AD, CD 30S ribosomal protein S4 300852  
121 4V8X 4 AD, CD 30S RIBOSOMAL PROTEIN S4 300852  
122 4V5S 4 AD, CD 30S RIBOSOMAL PROTEIN S4 300852  
123 4V9I 4 AD, CD 30S Ribosomal protein S4 300852  
124 1XMO 6 D 30S ribosomal protein S4 274  
125 3T1H 4 D 30S ribosomal protein S4 300852  
126 2UXD 4 D RIBOSOMAL PROTEIN S4 300852  
127 1N33 6 D 30S RIBOSOMAL PROTEIN S4 274  
128 1IBK 5 D 30S RIBOSOMAL PROTEIN S4 274  
129 4V6G 4 AG, CG 30S RIBOSOMAL PROTEIN S4 300852  
130 4V8N 4 AD, CD 30S RIBOSOMAL PROTEIN S4 300852  
131 4V97 4 AD, CD 30S ribosomal protein S4 300852  
132 1HNW 5 D 30S RIBOSOMAL PROTEIN S4 274  
133 4V7M 4 AD, CD 30S ribosomal protein S4 300852  
134 1IBM 7 D 30S RIBOSOMAL PROTEIN S4 274  
135 4V6A 4 AD, CD 30S ribosomal protein S4 300852  
136 4V84 4 AD, CD 30S ribosomal protein S4 262724  
137 4V7K 3 Ad, Bd 30S ribosomal protein S4 300852  
138 1HNX 5 D 30S RIBOSOMAL PROTEIN S4 274  
139 4V9Q 34 BD, DD 30S ribosomal protein S4 262724  
140 4V9N 7 AD, CD 30S ribosomal protein S4 262724  
141 4P70 4 QD, XD 30S ribosomal protein S4 300852  
142 4V8U 4 AD, CD 30S RIBOSOMAL PROTEIN S4 300852  
143 4LSK 4 QD, XD 30S ribosomal protein S4 300852  
144 4P6F 4 QD, XD 30S ribosomal protein S4 300852  
145 4V67 6 AD, CD 30S ribosomal protein S4 274  
146 4V83 4 AD, CD 30S ribosomal protein S4 262724  
147 4V5F 4 AD, CD 30S RIBOSOMAL PROTEIN S4 300852  
148 1VVJ 4 QD, XD 30S ribosomal protein S4 300852  
149 4LFZ 4 QD, XD 30S ribosomal protein S4 300852  
150 2E5L 5 D 30S ribosomal protein S4 274  
151 2HHH 4 D 30S ribosomal protein S4 300852  
152 4OX9 4 D 30S ribosomal protein S4 300852  
153 2UXB 4 D RIBOSOMAL PROTEIN S4 300852  
154 1I96 4 D 30S RIBOSOMAL PROTEIN S4 274  
155 4V9K 3 AD, CD 30S ribosomal protein S4 262724  
156 1N34 5 D 30S RIBOSOMAL PROTEIN S4 274  
157 4V5A 4 AD, CD 30S RIBOSOMAL PROTEIN S4 300852  
158 4V63 6 AD, CD 30S ribosomal protein S4 262724  
159 4L71 4 QD, XD 30S ribosomal protein S4 300852  
160 4KVB 4 D 30S ribosomal protein S4 262724  
161 4V7P 4 AD, DD 30S ribosomal protein S4 262724  
162 4V8J 4 AD, CD 30S ribosomal protein S4 300852  
163 1N36 4 D 30S RIBOSOMAL PROTEIN S4 274  
164 2ZM6 4 D 30S ribosomal protein S4 274  
165 4LEL 4 QD, XD 30S ribosomal protein S4 300852  
166 2F4V 5 D 30S ribosomal protein S4 274  
167 4V9L 3 AD, CD 30S ribosomal protein S4 262724  
168 1FKA 4 D 30S RIBOSOMAL PROTEIN S4 274  
169 4V5G 4 AD, CD 30S RIBOSOMAL PROTEIN S4 300852  
170 1I97 4 D 30S RIBOSOMAL PROTEIN S4 274  
171 4V9J 3 AD, CD 30S ribosomal protein S4 262724  
172 1I95 4 D 30S RIBOSOMAL PROTEIN S4 274  
173 4V8O 4 AD 30S RIBOSOMAL PROTEIN S4 300852  
174 4V9M 3 AD, CD 30S ribosomal protein S4 262724  
175 4W29 3 AD, CD 30S ribosomal protein S4 262724  
176 4V4Y 6 AG 30S ribosomal protein S4 300852  
177 4V4J 37 e 30S ribosomal protein S4 262724  
178 4V4X 6 AG 30S ribosomal protein S4 300852  
179 4V4Z 7 AG 30S ribosomal protein S4 300852  
180 4V4I 37 e 30S ribosomal protein S4 262724  
181 4V4P 39 BG 30S ribosomal protein S4 300852  
182 4V4R 7 AD 30S ribosomal protein S4 300852  
183 4V4S 7 AD 30S ribosomal protein S4 300852  
184 4V4T 7 AD 30S ribosomal protein S4 300852  
185 4V49 6 AD 30S ribosomal protein S4 562  
186 4V4A 4 AD 30S ribosomal protein S4 562  
187 4V4G 4 AD, CD, ED, GD, ID 30S ribosomal protein S4 562  
188 4V5N 4 AD 30S RIBOSOMAL PROTEIN S4 300852  
189 4V5M 4 AD 30S RIBOSOMAL PROTEIN S4 300852  
190 4V68 3 AD 30S ribosomal protein S4 274  
191 4V5Z 12 Ad 40S Ribosomal protein S9e 9615  
192 1ML5 9 G 30S RIBOSOMAL PROTEIN S4 562  
193 1JGO 7 G 30S RIBOSOMAL PROTEIN S4 274  
194 1JGP 7 G 30S RIBOSOMAL PROTEIN S4 274  
195 1JGQ 7 G 30S RIBOSOMAL PROTEIN S4 274  
196 4V42 7 AG 30S RIBOSOMAL PROTEIN S4 274  
 
Sequence Clusters for the Sequence Entities in PDB 4JI8
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 193 28
95% 33 194 45
90% 33 194 47
70% 33 194 58
50% 43 275 34
40% 43 275 45
30% 43 280 65
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 195 26
95% 33 195 41
90% 33 195 43
70% 33 195 54
50% 37 269 41
40% 44 322 35
30% 44 322 44
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 17605
95% 33 202 32
90% 33 202 33
70% 37 281 23
50% 37 281 33
40% 37 281 44
30% 37 281 68
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 196 23
95% 33 196 39
90% 33 196 41
70% 33 196 52
50% 37 274 38
40% 37 274 50
30% 42 323 47
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 194 27
95% 33 194 46
90% 33 194 48
70% 33 194 59
50% 33 194 92
40% 33 194 115
30% 33 194 137
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 198 21
95% 35 203 30
90% 35 203 31
70% 35 203 43
50% 42 282 32
40% 42 282 42
30% 42 282 67
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 190 29
95% 33 195 43
90% 33 195 45
70% 33 195 56
50% 33 195 89
40% 33 195 113
30% 37 272 76
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 110 54
95% 33 189 48
90% 33 193 50
70% 33 193 61
50% 33 193 95
40% 33 193 120
30% 33 193 139
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 123 47
95% 30 172 58
90% 30 172 62
70% 30 172 76
50% 30 172 111
40% 30 172 137
30% 30 172 156
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 174 36
95% 31 174 57
90% 31 174 61
70% 31 174 75
50% 38 272 37
40% 38 272 49
30% 38 272 72
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 195 24
95% 33 196 36
90% 33 196 39
70% 33 196 50
50% 33 196 87
40% 37 269 52
30% 37 269 75
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 146 42
95% 33 194 44
90% 33 194 46
70% 33 194 57
50% 33 194 91
40% 33 194 114
30% 33 194 136
Entity #21: Chains: U - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 185 32
95% 33 185 51
90% 33 185 54
70% 33 185 65
50% 33 185 101
40% 33 185 127
30% 33 185 147
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 171 37
95% 30 171 59
90% 30 171 63
70% 30 171 77
50% 31 210 73
40% 31 210 97
30% 31 210 120
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 188 30
95% 33 196 37
90% 33 196 40
70% 33 196 51
50% 37 269 39
40% 37 270 51
30% 37 270 73
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 195 25
95% 33 195 40
90% 33 195 42
70% 33 195 53
50% 38 273 36
40% 38 273 48
30% 38 275 70
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 200 17
95% 40 206 29
90% 40 206 30
70% 40 206 40
50% 40 206 80
40% 40 206 105
30% 45 243 90
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 199 20
95% 34 200 33
90% 34 200 34
70% 34 200 47
50% 38 241 54
40% 38 242 70
30% 38 242 94
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 195 22
95% 34 195 38
90% 34 199 35
70% 34 199 48
50% 40 275 35
40% 41 277 46
30% 47 327 43
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 106 73
95% 33 195 42
90% 33 195 44
70% 33 195 55
50% 37 269 40
40% 37 269 53
30% 42 318 49
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.