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Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Sequence Clustering and Redundancy Reduction Results
4JI8
Cluster # 54 Members. Sequence cutoff: 95% Cluster size: 182 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4Y4O 34 1c, 2c 30S ribosomal protein S3 300852  
2 4W2F 3 AC, CC 30S Ribosomal Protein S3 300852  
3 4Y4P 34 1c, 2c 30S ribosomal protein S3 300852  
4 4W2G 3 AC, CC 30S Ribosomal Protein S3 300852  
5 4LFB 3 C ribosomal protein S3 300852  
6 1VY4 3 AC, CC 30S ribosomal protein S3 300852  
7 4W2I 3 AC, CC 30S Ribosomal Protein S3 300852  
8 1VY5 3 AC, CC 30S ribosomal protein S3 300852  
9 4WQF 36 BC, DC 30S ribosomal protein S3 300852  
10 4W2H 3 AC, CC 30S Ribosomal Protein S3 300852  
11 4WPO 36 BC, DC 30S ribosomal protein S3 300852  
12 4V8I 3 AC, CC 30S Ribosomal Protein S3 274  
13 4JI1 3 C RIBOSOMAL PROTEIN S3 300852  
14 4Z3S 34 1c, 2c 30S ribosomal protein S3 300852  
15 4Z3Q 34 1c, 2c 30S Ribosomal Protein S3 300852  
16 4DR6 3 C 30S ribosomal protein S3 300852  
17 4LF7 3 C ribosomal protein S3 300852  
18 4LF8 3 C ribosomal protein S3 300852  
19 4WQU 36 BC, DC 30S ribosomal protein S3 300852  
20 2VQE 3 C 30S RIBOSOMAL PROTEIN S3 300852  
21 4Z8C 34 1c, 2c 30S ribosomal protein S3 300852  
22 2UUB 3 C 30S RIBOSOMAL PROTEIN S3 300852  
23 4DV6 3 C ribosomal protein S3 300852  
24 4DR5 3 C 30S ribosomal protein S3 300852  
25 4DR2 3 C 30S ribosomal protein S3 300852  
26 4LF9 3 C ribosomal protein S3 300852  
27 4WQY 36 BC, DC 30S ribosomal protein S3 300852  
28 4DUY 3 C ribosomal protein S3 300852  
29 4DV7 3 C ribosomal protein S3 300852  
30 4V8D 3 AF, CF 30S RIBOSOMAL PROTEIN S3 300852  
31 4DR3 3 C 30S ribosomal protein S3 300852  
32 4V90 3 AC 30S RIBOSOMAL PROTEIN S3 300852  
33 4JI3 3 C RIBOSOMAL PROTEIN S3 300852  
34 4JI6 3 C RIBOSOMAL PROTEIN S3 300852  
35 4JI8 3 C RIBOSOMAL PROTEIN S3 300852  
36 2UXC 3 C RIBOSOMAL PROTEIN S3 300852  
37 4V9R 3 AC, CC 30S Ribosomal Protein S3 274  
38 4B3M 3 C 30S RIBOSOMAL PROTEIN S3 300852  
39 4LF4 3 C ribosomal protein S3 300852  
40 4LF6 3 C ribosomal protein S3 300852  
41 4JI7 3 C RIBOSOMAL PROTEIN S3 300852  
42 4B3T 3 C 30S RIBOSOMAL PROTEIN S3 300852  
43 4V8B 3 AF, CF 30S RIBOSOMAL PROTEIN S3 300852  
44 2VQF 3 C 30S RIBOSOMAL PROTEIN S3 300852  
45 2UUA 3 C 30S RIBOSOMAL PROTEIN S3 300852  
46 4V87 33 BF, CF 30S RIBOSOMAL PROTEIN S3 300852  
47 4V95 3 AC, CC 30S Ribosomal Protein S3 274  
48 1VY7 3 AC, CC 30S ribosomal protein S3 300852  
49 4B3R 3 C 30S RIBOSOMAL PROTEIN S3 300852  
50 4LNT 3 QC, XC 30S ribosomal protein S3 300852  
51 4DR1 3 C 30S ribosomal protein S3 300852  
52 4LFA 3 C ribosomal protein S3 300852  
53 4DV4 3 C ribosomal protein S3 300852  
54 4JI0 3 C ribosomal protein S3 300852  
55 4V9S 3 AC, CC 30S Ribosomal Protein S3 274  
56 4JI2 3 C RIBOSOMAL PROTEIN S3 300852  
57 4DR7 3 C 30S ribosomal protein S3 300852  
58 1J5E 3 C 30S RIBOSOMAL PROTEIN S3 274  
59 4DUZ 3 C ribosomal protein S3 300852  
60 4V8G 3 AC, CC 30S Ribosomal Protein S3 300852  
61 4DV3 3 C ribosomal protein S3 300852  
62 4DV5 3 C ribosomal protein S3 300852  
63 2UUC 3 C 30S RIBOSOMAL PROTEIN S3 300852  
64 4LFC 3 C ribosomal protein S3 300852  
65 1FJG 4 C 30S RIBOSOMAL PROTEIN S3 274  
66 3T1Y 3 C 30S ribosomal protein S3 300852  
67 4JI4 3 C RIBOSOMAL PROTEIN S3 300852  
68 1VY6 3 AC, CC 30S ribosomal protein S3 300852  
69 1XMQ 5 C 30S Ribosomal Protein S3 274  
70 4DV0 3 C ribosomal protein S3 300852  
71 4V9B 3 AF, CF 30S RIBOSOMAL PROTEIN S3 300852  
72 4V6F 33 BF, CF 30S ribosomal protein S3 300852  
73 4V8F 33 BF, CF 30S RIBOSOMAL PROTEIN S3 300852  
74 4B3S 3 C 30S RIBOSOMAL PROTEIN S3 300852  
75 4DV2 3 C ribosomal protein S3 300852  
76 4DV1 3 C ribosomal protein S3 300852  
77 1N32 5 C 30S RIBOSOMAL PROTEIN S3 274  
78 1I94 3 C 30S RIBOSOMAL PROTEIN S3 274  
79 4V8H 3 AC, CC 30S Ribosomal Protein S3 300852  
80 4JI5 3 C RIBOSOMAL PROTEIN S3 300852  
81 4W2E 36 c 30S ribosomal protein S3 300852  
82 4V8C 33 CF, DF 30S RIBOSOMAL PROTEIN S3 300852  
83 4LF5 3 C ribosomal protein S3 300852  
84 4V9A 3 AF, CF 30S RIBOSOMAL PROTEIN S3 300852  
85 4V5J 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
86 4V7Y 3 AC, CC 30S ribosomal protein S3 300852  
87 4V8E 33 BF, DF 30S RIBOSOMAL PROTEIN S3 300852  
88 4DR4 3 C 30S ribosomal protein S3 300852  
89 3OTO 3 C 30S RIBOSOMAL PROTEIN S3 300852  
90 2UU9 3 C 30S RIBOSOMAL PROTEIN S3 300852  
91 4V8Q 37 BC 30S RIBOSOMAL PROTEIN S3 300852  
92 1HR0 4 C 30S RIBOSOMAL PROTEIN S3 274  
93 4AQY 3 C 30S RIBOSOMAL PROTEIN S3 274  
94 4NXM 3 C ribosomal protein S3 300852  
95 4V5L 3 AC 30S RIBOSOMAL PROTEIN S3 300852  
96 4V7X 3 AC, CC 30S ribosomal protein S3 300852  
97 1IBL 6 C 30S RIBOSOMAL PROTEIN S3 274  
98 4V7W 3 AC, CC 30S ribosomal protein S3 300852  
99 4Z3R 34 1c, 2c 30S ribosomal protein S3 300852  
100 4WT8 3 C 30S ribosomal protein S3 300852  
101 4NXN 3 C ribosomal protein S3 300852  
102 1XNR 5 C 16S Ribosomal protein S3 274  
103 4LT8 3 QC, XC 30S ribosomal protein S3 300852  
104 4V51 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
105 4V7L 3 AC, CC 30S ribosomal protein S3 300852  
106 4V5R 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
107 1HNZ 4 C 30S RIBOSOMAL PROTEIN S3 274  
108 1XNQ 5 C Ribosomal protein S3 274  
109 4V8A 33 CC, DC 30S ribosomal protein S3 300852  
110 4V5K 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
111 4V5Q 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
112 4V7J 2 Ac, Bc 30S ribosomal protein S3 300852  
113 4V5C 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
114 4V5E 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
115 4L47 3 QC, XC 30S ribosomal protein S3 300852  
116 4V5P 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
117 4V5D 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
118 4V7Z 3 AC, CC 30S ribosomal protein S3 300852  
119 4V8X 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
120 4V5S 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
121 1XMO 5 C 30S ribosomal protein S3 274  
122 3T1H 3 C 30S ribosomal protein S3 300852  
123 2UXD 3 C RIBOSOMAL PROTEIN S3 300852  
124 1N33 5 C 30S RIBOSOMAL PROTEIN S3 274  
125 1IBK 4 C 30S RIBOSOMAL PROTEIN S3 274  
126 4V6G 3 AF, CF 30S RIBOSOMAL PROTEIN S3 300852  
127 4V8N 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
128 4V97 3 AC, CC 30S ribosomal protein S3 300852  
129 1HNW 4 C 30S RIBOSOMAL PROTEIN S3 274  
130 4V7M 3 AC, CC 30S ribosomal protein S3 300852  
131 4TUD 3 QC, XC 30S ribosomal protein S3 300852  
132 1IBM 6 C 30S RIBOSOMAL PROTEIN S3 274  
133 4V6A 3 AC, CC 30S ribosomal protein S3 300852  
134 4TUE 3 QC, XC 30S ribosomal protein S3 300852  
135 4TUA 3 QC, XC 30S ribosomal protein S3 300852  
136 4V7K 2 Ac, Bc 30S ribosomal protein S3 300852  
137 1HNX 4 C 30S RIBOSOMAL PROTEIN S3 274  
138 4TUC 3 QC, XC 30S ribosomal protein S3 300852  
139 4TUB 3 QC, XC 30S ribosomal protein S3 300852  
140 4P70 3 QC, XC 30S ribosomal protein S3 300852  
141 4V8U 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
142 4LSK 3 QC, XC 30S ribosomal protein S3 300852  
143 4P6F 3 QC, XC 30S ribosomal protein S3 300852  
144 4V67 5 AC, CC 30S ribosomal protein S3 274  
145 4V5F 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
146 1VVJ 3 QC, XC 30S ribosomal protein S3 300852  
147 4LFZ 3 QC, XC 30S ribosomal protein S3 300852  
148 2E5L 4 C 30S ribosomal protein S3 274  
149 2HHH 3 C 30S ribosomal protein S3 300852  
150 4OX9 3 C 30S ribosomal protein S3 300852  
151 2UXB 3 C RIBOSOMAL PROTEIN S3 300852  
152 1I96 3 C 30S RIBOSOMAL PROTEIN S3 274  
153 1N34 4 C 30S RIBOSOMAL PROTEIN S3 274  
154 4V5A 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
155 4V63 5 AC, CC 30S ribosomal protein S3 262724  
156 4L71 3 QC, XC 30S ribosomal protein S3 300852  
157 4KVB 3 C 30S ribosomal protein S3 262724  
158 4V8J 3 AC, CC 30S ribosomal protein S3 300852  
159 1N36 3 C 30S RIBOSOMAL PROTEIN S3 274  
160 2ZM6 3 C 30S ribosomal protein S3 274  
161 4LEL 3 QC, XC 30S ribosomal protein S3 300852  
162 2F4V 4 C 30S ribosomal protein S3 274  
163 4V5G 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
164 1I97 3 C 30S RIBOSOMAL PROTEIN S3 274  
165 1I95 3 C 30S RIBOSOMAL PROTEIN S3 274  
166 4V8O 3 AC 30S RIBOSOMAL PROTEIN S3 300852  
167 4V4Y 5 AF 30S ribosomal protein S3 300852  
168 4V4J 36 d 30S ribosomal protein S3 262724  
169 4V4X 5 AF 30S ribosomal protein S3 300852  
170 4V4Z 6 AF 30S ribosomal protein S3 300852  
171 4V4I 36 d 30S ribosomal protein S3 262724  
172 4V4P 38 BF 30S ribosomal protein S3 300852  
173 4V4R 6 AC 30S ribosomal protein S3 300852  
174 4V4S 6 AC 30S ribosomal protein S3 300852  
175 4V4T 6 AC 30S ribosomal protein S3 300852  
176 4V5N 3 AC 30S RIBOSOMAL PROTEIN S3 300852  
177 4V5M 3 AC 30S RIBOSOMAL PROTEIN S3 300852  
178 1ML5 8 F 30S RIBOSOMAL PROTEIN S3 562  
179 1JGO 6 F 30S RIBOSOMAL PROTEIN S3 274  
180 1JGP 6 F 30S RIBOSOMAL PROTEIN S3 274  
181 1JGQ 6 F 30S RIBOSOMAL PROTEIN S3 274  
182 4V42 6 AF 30S RIBOSOMAL PROTEIN S3 274  
 
Sequence Clusters for the Sequence Entities in PDB 4JI8
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 207 25
95% 38 208 44
90% 38 208 47
70% 38 208 57
50% 49 293 35
40% 49 293 45
30% 54 345 45
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 209 23
95% 38 209 40
90% 38 209 43
70% 38 209 52
50% 43 287 41
40% 50 346 32
30% 50 347 44
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 18145
95% 38 216 30
90% 38 216 33
70% 43 298 24
50% 43 299 34
40% 43 299 44
30% 43 299 66
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 210 20
95% 38 210 38
90% 38 210 41
70% 38 210 50
50% 43 292 39
40% 43 292 49
30% 48 346 48
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 208 24
95% 38 208 45
90% 38 208 48
70% 38 209 55
50% 38 209 82
40% 38 209 108
30% 38 209 125
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 212 18
95% 40 217 29
90% 40 217 32
70% 40 217 42
50% 48 300 33
40% 48 301 43
30% 48 301 64
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 204 26
95% 38 209 42
90% 38 209 45
70% 38 209 54
50% 38 209 81
40% 38 210 107
30% 43 290 73
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 123 59
95% 38 203 47
90% 38 207 49
70% 38 207 58
50% 38 207 84
40% 38 207 111
30% 38 207 128
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 134 56
95% 35 183 53
90% 35 183 56
70% 35 183 70
50% 35 183 115
40% 35 183 138
30% 35 183 156
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 39 212 17
95% 39 212 33
90% 39 212 37
70% 39 212 46
50% 44 290 38
40% 44 290 48
30% 44 290 70
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 209 21
95% 38 210 35
90% 38 210 39
70% 38 210 48
50% 43 286 43
40% 43 287 51
30% 43 287 72
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 159 50
95% 38 208 43
90% 38 208 46
70% 38 208 56
50% 38 208 83
40% 38 208 109
30% 38 208 126
Entity #21: Chains: U - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 199 31
95% 38 199 49
90% 38 199 51
70% 38 199 62
50% 38 199 94
40% 38 199 117
30% 38 199 141
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 182 35
95% 35 182 54
90% 35 182 57
70% 35 182 71
50% 36 223 76
40% 36 223 101
30% 36 223 120
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 202 27
95% 38 210 36
90% 38 210 40
70% 38 210 49
50% 43 287 40
40% 43 288 50
30% 43 288 71
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 209 22
95% 38 209 39
90% 38 209 42
70% 38 209 51
50% 44 291 37
40% 44 291 47
30% 44 293 69
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 39 214 15
95% 45 220 26
90% 45 220 31
70% 45 220 41
50% 45 220 78
40% 45 220 102
30% 51 259 82
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 39 213 16
95% 39 214 32
90% 39 214 35
70% 39 214 44
50% 44 257 52
40% 44 258 66
30% 44 258 86
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 39 209 19
95% 39 209 37
90% 39 213 36
70% 39 213 45
50% 46 293 36
40% 47 295 46
30% 53 350 42
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 119 80
95% 38 209 41
90% 38 209 44
70% 38 209 53
50% 43 287 42
40% 43 287 52
30% 48 341 49
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.