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Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Sequence Clustering and Redundancy Reduction Results
4JI8
Cluster # 72 Members. Sequence cutoff: 95% Cluster size: 171 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4W2F 3 AC, CC 30S Ribosomal Protein S3 300852  
2 4W2G 3 AC, CC 30S Ribosomal Protein S3 300852  
3 4LFB 3 C ribosomal protein S3 300852  
4 1VY4 3 AC, CC 30S ribosomal protein S3 300852  
5 4W2I 3 AC, CC 30S Ribosomal Protein S3 300852  
6 1VY5 3 AC, CC 30S ribosomal protein S3 300852  
7 4WQF 36 BC, DC 30S ribosomal protein S3 300852  
8 4W2H 3 AC, CC 30S Ribosomal Protein S3 300852  
9 4WPO 36 BC, DC 30S ribosomal protein S3 300852  
10 4V8I 3 AC, CC 30S Ribosomal Protein S3 274  
11 4JI1 3 C RIBOSOMAL PROTEIN S3 300852  
12 4DR6 3 C 30S ribosomal protein S3 300852  
13 4LF7 3 C ribosomal protein S3 300852  
14 4LF8 3 C ribosomal protein S3 300852  
15 4WQU 36 BC, DC 30S ribosomal protein S3 300852  
16 2VQE 3 C 30S RIBOSOMAL PROTEIN S3 300852  
17 2UUB 3 C 30S RIBOSOMAL PROTEIN S3 300852  
18 4DV6 3 C ribosomal protein S3 300852  
19 4DR5 3 C 30S ribosomal protein S3 300852  
20 4DR2 3 C 30S ribosomal protein S3 300852  
21 4LF9 3 C ribosomal protein S3 300852  
22 4WQY 36 BC, DC 30S ribosomal protein S3 300852  
23 4DUY 3 C ribosomal protein S3 300852  
24 4DV7 3 C ribosomal protein S3 300852  
25 4V8D 3 AF, CF 30S RIBOSOMAL PROTEIN S3 300852  
26 4DR3 3 C 30S ribosomal protein S3 300852  
27 4V90 3 AC 30S RIBOSOMAL PROTEIN S3 300852  
28 4JI3 3 C RIBOSOMAL PROTEIN S3 300852  
29 4JI6 3 C RIBOSOMAL PROTEIN S3 300852  
30 4JI8 3 C RIBOSOMAL PROTEIN S3 300852  
31 2UXC 3 C RIBOSOMAL PROTEIN S3 300852  
32 4V9R 3 AC, CC 30S Ribosomal Protein S3 274  
33 4B3M 3 C 30S RIBOSOMAL PROTEIN S3 300852  
34 4LF4 3 C ribosomal protein S3 300852  
35 4LF6 3 C ribosomal protein S3 300852  
36 4JI7 3 C RIBOSOMAL PROTEIN S3 300852  
37 4B3T 3 C 30S RIBOSOMAL PROTEIN S3 300852  
38 4V8B 3 AF, CF 30S RIBOSOMAL PROTEIN S3 300852  
39 2VQF 3 C 30S RIBOSOMAL PROTEIN S3 300852  
40 2UUA 3 C 30S RIBOSOMAL PROTEIN S3 300852  
41 4V87 33 BF, CF 30S RIBOSOMAL PROTEIN S3 300852  
42 4V95 3 AC, CC 30S Ribosomal Protein S3 274  
43 1VY7 3 AC, CC 30S ribosomal protein S3 300852  
44 4B3R 3 C 30S RIBOSOMAL PROTEIN S3 300852  
45 4LNT 3 QC, XC 30S ribosomal protein S3 300852  
46 4DR1 3 C 30S ribosomal protein S3 300852  
47 4LFA 3 C ribosomal protein S3 300852  
48 4DV4 3 C ribosomal protein S3 300852  
49 4JI0 3 C ribosomal protein S3 300852  
50 4V9S 3 AC, CC 30S Ribosomal Protein S3 274  
51 4JI2 3 C RIBOSOMAL PROTEIN S3 300852  
52 4DR7 3 C 30S ribosomal protein S3 300852  
53 1J5E 3 C 30S RIBOSOMAL PROTEIN S3 274  
54 4DUZ 3 C ribosomal protein S3 300852  
55 4V8G 3 AC, CC 30S Ribosomal Protein S3 300852  
56 4DV3 3 C ribosomal protein S3 300852  
57 4DV5 3 C ribosomal protein S3 300852  
58 2UUC 3 C 30S RIBOSOMAL PROTEIN S3 300852  
59 4LFC 3 C ribosomal protein S3 300852  
60 1FJG 4 C 30S RIBOSOMAL PROTEIN S3 274  
61 3T1Y 3 C 30S ribosomal protein S3 300852  
62 4JI4 3 C RIBOSOMAL PROTEIN S3 300852  
63 1VY6 3 AC, CC 30S ribosomal protein S3 300852  
64 1XMQ 5 C 30S Ribosomal Protein S3 274  
65 4DV0 3 C ribosomal protein S3 300852  
66 4V9B 3 AF, CF 30S RIBOSOMAL PROTEIN S3 300852  
67 4V6F 33 BF, CF 30S ribosomal protein S3 300852  
68 4V8F 33 BF, CF 30S RIBOSOMAL PROTEIN S3 300852  
69 4B3S 3 C 30S RIBOSOMAL PROTEIN S3 300852  
70 4DV2 3 C ribosomal protein S3 300852  
71 4DV1 3 C ribosomal protein S3 300852  
72 1N32 5 C 30S RIBOSOMAL PROTEIN S3 274  
73 1I94 3 C 30S RIBOSOMAL PROTEIN S3 274  
74 4V8H 3 AC, CC 30S Ribosomal Protein S3 300852  
75 4JI5 3 C RIBOSOMAL PROTEIN S3 300852  
76 4W2E 36 c 30S ribosomal protein S3 300852  
77 4V8C 33 CF, DF 30S RIBOSOMAL PROTEIN S3 300852  
78 4LF5 3 C ribosomal protein S3 300852  
79 4V9A 3 AF, CF 30S RIBOSOMAL PROTEIN S3 300852  
80 4V5J 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
81 4V7Y 3 AC, CC 30S ribosomal protein S3 300852  
82 4V8E 33 BF, DF 30S RIBOSOMAL PROTEIN S3 300852  
83 4DR4 3 C 30S ribosomal protein S3 300852  
84 3OTO 3 C 30S RIBOSOMAL PROTEIN S3 300852  
85 2UU9 3 C 30S RIBOSOMAL PROTEIN S3 300852  
86 4V8Q 37 BC 30S RIBOSOMAL PROTEIN S3 300852  
87 1HR0 4 C 30S RIBOSOMAL PROTEIN S3 274  
88 4AQY 3 C 30S RIBOSOMAL PROTEIN S3 274  
89 4NXM 3 C ribosomal protein S3 300852  
90 4V5L 3 AC 30S RIBOSOMAL PROTEIN S3 300852  
91 4V7X 3 AC, CC 30S ribosomal protein S3 300852  
92 1IBL 6 C 30S RIBOSOMAL PROTEIN S3 274  
93 4V7W 3 AC, CC 30S ribosomal protein S3 300852  
94 4WT8 3 C 30S ribosomal protein S3 300852  
95 4NXN 3 C ribosomal protein S3 300852  
96 1XNR 5 C 16S Ribosomal protein S3 274  
97 4LT8 3 QC, XC 30S ribosomal protein S3 300852  
98 4V51 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
99 4V7L 3 AC, CC 30S ribosomal protein S3 300852  
100 4V5R 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
101 1HNZ 4 C 30S RIBOSOMAL PROTEIN S3 274  
102 1XNQ 5 C Ribosomal protein S3 274  
103 4V8A 33 CC, DC 30S ribosomal protein S3 300852  
104 4V5K 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
105 4V5Q 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
106 4V7J 2 Ac, Bc 30S ribosomal protein S3 300852  
107 4V5C 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
108 4V5E 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
109 4L47 3 QC, XC 30S ribosomal protein S3 300852  
110 4V5P 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
111 4V5D 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
112 4V7Z 3 AC, CC 30S ribosomal protein S3 300852  
113 4V8X 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
114 4V5S 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
115 1XMO 5 C 30S ribosomal protein S3 274  
116 3T1H 3 C 30S ribosomal protein S3 300852  
117 2UXD 3 C RIBOSOMAL PROTEIN S3 300852  
118 1N33 5 C 30S RIBOSOMAL PROTEIN S3 274  
119 1IBK 4 C 30S RIBOSOMAL PROTEIN S3 274  
120 4V6G 3 AF, CF 30S RIBOSOMAL PROTEIN S3 300852  
121 4V8N 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
122 4V97 3 AC, CC 30S ribosomal protein S3 300852  
123 1HNW 4 C 30S RIBOSOMAL PROTEIN S3 274  
124 4V7M 3 AC, CC 30S ribosomal protein S3 300852  
125 1IBM 6 C 30S RIBOSOMAL PROTEIN S3 274  
126 4V6A 3 AC, CC 30S ribosomal protein S3 300852  
127 4V7K 2 Ac, Bc 30S ribosomal protein S3 300852  
128 1HNX 4 C 30S RIBOSOMAL PROTEIN S3 274  
129 4P70 3 QC, XC 30S ribosomal protein S3 300852  
130 4V8U 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
131 4LSK 3 QC, XC 30S ribosomal protein S3 300852  
132 4P6F 3 QC, XC 30S ribosomal protein S3 300852  
133 4V67 5 AC, CC 30S ribosomal protein S3 274  
134 4V5F 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
135 1VVJ 3 QC, XC 30S ribosomal protein S3 300852  
136 4LFZ 3 QC, XC 30S ribosomal protein S3 300852  
137 2E5L 4 C 30S ribosomal protein S3 274  
138 2HHH 3 C 30S ribosomal protein S3 300852  
139 4OX9 3 C 30S ribosomal protein S3 300852  
140 2UXB 3 C RIBOSOMAL PROTEIN S3 300852  
141 1I96 3 C 30S RIBOSOMAL PROTEIN S3 274  
142 1N34 4 C 30S RIBOSOMAL PROTEIN S3 274  
143 4V5A 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
144 4V63 5 AC, CC 30S ribosomal protein S3 262724  
145 4L71 3 QC, XC 30S ribosomal protein S3 300852  
146 4KVB 3 C 30S ribosomal protein S3 262724  
147 4V8J 3 AC, CC 30S ribosomal protein S3 300852  
148 1N36 3 C 30S RIBOSOMAL PROTEIN S3 274  
149 2ZM6 3 C 30S ribosomal protein S3 274  
150 4LEL 3 QC, XC 30S ribosomal protein S3 300852  
151 2F4V 4 C 30S ribosomal protein S3 274  
152 4V5G 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
153 1I97 3 C 30S RIBOSOMAL PROTEIN S3 274  
154 1I95 3 C 30S RIBOSOMAL PROTEIN S3 274  
155 4V8O 3 AC 30S RIBOSOMAL PROTEIN S3 300852  
156 4V4Y 5 AF 30S ribosomal protein S3 300852  
157 4V4J 36 d 30S ribosomal protein S3 262724  
158 4V4X 5 AF 30S ribosomal protein S3 300852  
159 4V4Z 6 AF 30S ribosomal protein S3 300852  
160 4V4I 36 d 30S ribosomal protein S3 262724  
161 4V4P 38 BF 30S ribosomal protein S3 300852  
162 4V4R 6 AC 30S ribosomal protein S3 300852  
163 4V4S 6 AC 30S ribosomal protein S3 300852  
164 4V4T 6 AC 30S ribosomal protein S3 300852  
165 4V5N 3 AC 30S RIBOSOMAL PROTEIN S3 300852  
166 4V5M 3 AC 30S RIBOSOMAL PROTEIN S3 300852  
167 1ML5 8 F 30S RIBOSOMAL PROTEIN S3 562  
168 1JGO 6 F 30S RIBOSOMAL PROTEIN S3 274  
169 1JGP 6 F 30S RIBOSOMAL PROTEIN S3 274  
170 1JGQ 6 F 30S RIBOSOMAL PROTEIN S3 274  
171 4V42 6 AF 30S RIBOSOMAL PROTEIN S3 274  
 
Sequence Clusters for the Sequence Entities in PDB 4JI8
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 194 28
95% 33 195 46
90% 33 195 48
70% 33 195 59
50% 43 276 35
40% 43 276 45
30% 48 326 46
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 196 26
95% 33 196 42
90% 33 196 44
70% 33 196 55
50% 37 270 42
40% 44 325 36
30% 44 325 47
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 17765
95% 33 203 31
90% 33 203 33
70% 37 282 24
50% 37 282 34
40% 37 282 44
30% 37 282 69
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 197 23
95% 33 197 38
90% 33 197 40
70% 33 197 52
50% 37 275 39
40% 37 275 51
30% 42 326 49
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 195 27
95% 33 195 47
90% 33 195 49
70% 33 195 60
50% 33 195 92
40% 33 195 116
30% 33 195 139
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 199 19
95% 35 204 30
90% 35 204 32
70% 35 204 44
50% 42 283 33
40% 42 283 43
30% 42 283 68
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 191 29
95% 33 196 44
90% 33 196 46
70% 33 196 57
50% 33 196 89
40% 33 196 114
30% 37 273 77
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 110 66
95% 33 190 49
90% 33 194 50
70% 33 194 61
50% 33 194 93
40% 33 194 117
30% 33 194 141
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 123 59
95% 30 172 70
90% 30 172 74
70% 30 172 88
50% 30 172 125
40% 30 172 146
30% 30 172 165
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 174 47
95% 31 174 69
90% 31 174 73
70% 31 174 87
50% 38 273 38
40% 38 273 49
30% 38 273 73
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 196 24
95% 33 197 35
90% 33 197 38
70% 33 197 50
50% 33 197 88
40% 37 270 53
30% 37 270 76
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 146 54
95% 33 195 45
90% 33 195 47
70% 33 195 58
50% 33 195 91
40% 33 195 115
30% 33 195 138
Entity #21: Chains: U - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 186 32
95% 33 186 51
90% 33 186 54
70% 33 186 66
50% 33 186 110
40% 33 186 133
30% 33 186 151
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 171 48
95% 30 171 72
90% 30 171 76
70% 30 171 90
50% 31 210 76
40% 31 210 101
30% 31 210 121
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 189 30
95% 33 197 36
90% 33 197 39
70% 33 197 51
50% 37 270 40
40% 37 271 52
30% 37 271 75
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 196 25
95% 33 196 40
90% 33 196 42
70% 33 196 54
50% 38 274 37
40% 38 274 48
30% 38 276 71
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 201 17
95% 40 207 29
90% 40 207 31
70% 40 207 42
50% 40 207 81
40% 40 207 108
30% 45 244 90
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 200 18
95% 34 201 33
90% 34 201 35
70% 34 201 46
50% 38 242 55
40% 38 243 71
30% 38 243 95
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 196 22
95% 34 196 37
90% 34 200 36
70% 34 200 47
50% 40 276 36
40% 41 278 46
30% 47 330 45
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 106 86
95% 33 196 43
90% 33 196 45
70% 33 196 56
50% 37 270 41
40% 37 270 54
30% 42 321 50
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.