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Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Sequence Clustering and Redundancy Reduction Results
4JI8
Cluster # 72 Members. Sequence cutoff: 95% Cluster size: 173 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4Y4O 34 1c, 2c 30S ribosomal protein S3 300852  
2 4W2F 3 AC, CC 30S Ribosomal Protein S3 300852  
3 4Y4P 34 1c, 2c 30S ribosomal protein S3 300852  
4 4W2G 3 AC, CC 30S Ribosomal Protein S3 300852  
5 4LFB 3 C ribosomal protein S3 300852  
6 1VY4 3 AC, CC 30S ribosomal protein S3 300852  
7 4W2I 3 AC, CC 30S Ribosomal Protein S3 300852  
8 1VY5 3 AC, CC 30S ribosomal protein S3 300852  
9 4WQF 36 BC, DC 30S ribosomal protein S3 300852  
10 4W2H 3 AC, CC 30S Ribosomal Protein S3 300852  
11 4WPO 36 BC, DC 30S ribosomal protein S3 300852  
12 4V8I 3 AC, CC 30S Ribosomal Protein S3 274  
13 4JI1 3 C RIBOSOMAL PROTEIN S3 300852  
14 4DR6 3 C 30S ribosomal protein S3 300852  
15 4LF7 3 C ribosomal protein S3 300852  
16 4LF8 3 C ribosomal protein S3 300852  
17 4WQU 36 BC, DC 30S ribosomal protein S3 300852  
18 2VQE 3 C 30S RIBOSOMAL PROTEIN S3 300852  
19 2UUB 3 C 30S RIBOSOMAL PROTEIN S3 300852  
20 4DV6 3 C ribosomal protein S3 300852  
21 4DR5 3 C 30S ribosomal protein S3 300852  
22 4DR2 3 C 30S ribosomal protein S3 300852  
23 4LF9 3 C ribosomal protein S3 300852  
24 4WQY 36 BC, DC 30S ribosomal protein S3 300852  
25 4DUY 3 C ribosomal protein S3 300852  
26 4DV7 3 C ribosomal protein S3 300852  
27 4V8D 3 AF, CF 30S RIBOSOMAL PROTEIN S3 300852  
28 4DR3 3 C 30S ribosomal protein S3 300852  
29 4V90 3 AC 30S RIBOSOMAL PROTEIN S3 300852  
30 4JI3 3 C RIBOSOMAL PROTEIN S3 300852  
31 4JI6 3 C RIBOSOMAL PROTEIN S3 300852  
32 4JI8 3 C RIBOSOMAL PROTEIN S3 300852  
33 2UXC 3 C RIBOSOMAL PROTEIN S3 300852  
34 4V9R 3 AC, CC 30S Ribosomal Protein S3 274  
35 4B3M 3 C 30S RIBOSOMAL PROTEIN S3 300852  
36 4LF4 3 C ribosomal protein S3 300852  
37 4LF6 3 C ribosomal protein S3 300852  
38 4JI7 3 C RIBOSOMAL PROTEIN S3 300852  
39 4B3T 3 C 30S RIBOSOMAL PROTEIN S3 300852  
40 4V8B 3 AF, CF 30S RIBOSOMAL PROTEIN S3 300852  
41 2VQF 3 C 30S RIBOSOMAL PROTEIN S3 300852  
42 2UUA 3 C 30S RIBOSOMAL PROTEIN S3 300852  
43 4V87 33 BF, CF 30S RIBOSOMAL PROTEIN S3 300852  
44 4V95 3 AC, CC 30S Ribosomal Protein S3 274  
45 1VY7 3 AC, CC 30S ribosomal protein S3 300852  
46 4B3R 3 C 30S RIBOSOMAL PROTEIN S3 300852  
47 4LNT 3 QC, XC 30S ribosomal protein S3 300852  
48 4DR1 3 C 30S ribosomal protein S3 300852  
49 4LFA 3 C ribosomal protein S3 300852  
50 4DV4 3 C ribosomal protein S3 300852  
51 4JI0 3 C ribosomal protein S3 300852  
52 4V9S 3 AC, CC 30S Ribosomal Protein S3 274  
53 4JI2 3 C RIBOSOMAL PROTEIN S3 300852  
54 4DR7 3 C 30S ribosomal protein S3 300852  
55 1J5E 3 C 30S RIBOSOMAL PROTEIN S3 274  
56 4DUZ 3 C ribosomal protein S3 300852  
57 4V8G 3 AC, CC 30S Ribosomal Protein S3 300852  
58 4DV3 3 C ribosomal protein S3 300852  
59 4DV5 3 C ribosomal protein S3 300852  
60 2UUC 3 C 30S RIBOSOMAL PROTEIN S3 300852  
61 4LFC 3 C ribosomal protein S3 300852  
62 1FJG 4 C 30S RIBOSOMAL PROTEIN S3 274  
63 3T1Y 3 C 30S ribosomal protein S3 300852  
64 4JI4 3 C RIBOSOMAL PROTEIN S3 300852  
65 1VY6 3 AC, CC 30S ribosomal protein S3 300852  
66 1XMQ 5 C 30S Ribosomal Protein S3 274  
67 4DV0 3 C ribosomal protein S3 300852  
68 4V9B 3 AF, CF 30S RIBOSOMAL PROTEIN S3 300852  
69 4V6F 33 BF, CF 30S ribosomal protein S3 300852  
70 4V8F 33 BF, CF 30S RIBOSOMAL PROTEIN S3 300852  
71 4B3S 3 C 30S RIBOSOMAL PROTEIN S3 300852  
72 4DV2 3 C ribosomal protein S3 300852  
73 4DV1 3 C ribosomal protein S3 300852  
74 1N32 5 C 30S RIBOSOMAL PROTEIN S3 274  
75 1I94 3 C 30S RIBOSOMAL PROTEIN S3 274  
76 4V8H 3 AC, CC 30S Ribosomal Protein S3 300852  
77 4JI5 3 C RIBOSOMAL PROTEIN S3 300852  
78 4W2E 36 c 30S ribosomal protein S3 300852  
79 4V8C 33 CF, DF 30S RIBOSOMAL PROTEIN S3 300852  
80 4LF5 3 C ribosomal protein S3 300852  
81 4V9A 3 AF, CF 30S RIBOSOMAL PROTEIN S3 300852  
82 4V5J 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
83 4V7Y 3 AC, CC 30S ribosomal protein S3 300852  
84 4V8E 33 BF, DF 30S RIBOSOMAL PROTEIN S3 300852  
85 4DR4 3 C 30S ribosomal protein S3 300852  
86 3OTO 3 C 30S RIBOSOMAL PROTEIN S3 300852  
87 2UU9 3 C 30S RIBOSOMAL PROTEIN S3 300852  
88 4V8Q 37 BC 30S RIBOSOMAL PROTEIN S3 300852  
89 1HR0 4 C 30S RIBOSOMAL PROTEIN S3 274  
90 4AQY 3 C 30S RIBOSOMAL PROTEIN S3 274  
91 4NXM 3 C ribosomal protein S3 300852  
92 4V5L 3 AC 30S RIBOSOMAL PROTEIN S3 300852  
93 4V7X 3 AC, CC 30S ribosomal protein S3 300852  
94 1IBL 6 C 30S RIBOSOMAL PROTEIN S3 274  
95 4V7W 3 AC, CC 30S ribosomal protein S3 300852  
96 4WT8 3 C 30S ribosomal protein S3 300852  
97 4NXN 3 C ribosomal protein S3 300852  
98 1XNR 5 C 16S Ribosomal protein S3 274  
99 4LT8 3 QC, XC 30S ribosomal protein S3 300852  
100 4V51 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
101 4V7L 3 AC, CC 30S ribosomal protein S3 300852  
102 4V5R 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
103 1HNZ 4 C 30S RIBOSOMAL PROTEIN S3 274  
104 1XNQ 5 C Ribosomal protein S3 274  
105 4V8A 33 CC, DC 30S ribosomal protein S3 300852  
106 4V5K 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
107 4V5Q 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
108 4V7J 2 Ac, Bc 30S ribosomal protein S3 300852  
109 4V5C 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
110 4V5E 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
111 4L47 3 QC, XC 30S ribosomal protein S3 300852  
112 4V5P 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
113 4V5D 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
114 4V7Z 3 AC, CC 30S ribosomal protein S3 300852  
115 4V8X 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
116 4V5S 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
117 1XMO 5 C 30S ribosomal protein S3 274  
118 3T1H 3 C 30S ribosomal protein S3 300852  
119 2UXD 3 C RIBOSOMAL PROTEIN S3 300852  
120 1N33 5 C 30S RIBOSOMAL PROTEIN S3 274  
121 1IBK 4 C 30S RIBOSOMAL PROTEIN S3 274  
122 4V6G 3 AF, CF 30S RIBOSOMAL PROTEIN S3 300852  
123 4V8N 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
124 4V97 3 AC, CC 30S ribosomal protein S3 300852  
125 1HNW 4 C 30S RIBOSOMAL PROTEIN S3 274  
126 4V7M 3 AC, CC 30S ribosomal protein S3 300852  
127 1IBM 6 C 30S RIBOSOMAL PROTEIN S3 274  
128 4V6A 3 AC, CC 30S ribosomal protein S3 300852  
129 4V7K 2 Ac, Bc 30S ribosomal protein S3 300852  
130 1HNX 4 C 30S RIBOSOMAL PROTEIN S3 274  
131 4P70 3 QC, XC 30S ribosomal protein S3 300852  
132 4V8U 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
133 4LSK 3 QC, XC 30S ribosomal protein S3 300852  
134 4P6F 3 QC, XC 30S ribosomal protein S3 300852  
135 4V67 5 AC, CC 30S ribosomal protein S3 274  
136 4V5F 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
137 1VVJ 3 QC, XC 30S ribosomal protein S3 300852  
138 4LFZ 3 QC, XC 30S ribosomal protein S3 300852  
139 2E5L 4 C 30S ribosomal protein S3 274  
140 2HHH 3 C 30S ribosomal protein S3 300852  
141 4OX9 3 C 30S ribosomal protein S3 300852  
142 2UXB 3 C RIBOSOMAL PROTEIN S3 300852  
143 1I96 3 C 30S RIBOSOMAL PROTEIN S3 274  
144 1N34 4 C 30S RIBOSOMAL PROTEIN S3 274  
145 4V5A 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
146 4V63 5 AC, CC 30S ribosomal protein S3 262724  
147 4L71 3 QC, XC 30S ribosomal protein S3 300852  
148 4KVB 3 C 30S ribosomal protein S3 262724  
149 4V8J 3 AC, CC 30S ribosomal protein S3 300852  
150 1N36 3 C 30S RIBOSOMAL PROTEIN S3 274  
151 2ZM6 3 C 30S ribosomal protein S3 274  
152 4LEL 3 QC, XC 30S ribosomal protein S3 300852  
153 2F4V 4 C 30S ribosomal protein S3 274  
154 4V5G 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
155 1I97 3 C 30S RIBOSOMAL PROTEIN S3 274  
156 1I95 3 C 30S RIBOSOMAL PROTEIN S3 274  
157 4V8O 3 AC 30S RIBOSOMAL PROTEIN S3 300852  
158 4V4Y 5 AF 30S ribosomal protein S3 300852  
159 4V4J 36 d 30S ribosomal protein S3 262724  
160 4V4X 5 AF 30S ribosomal protein S3 300852  
161 4V4Z 6 AF 30S ribosomal protein S3 300852  
162 4V4I 36 d 30S ribosomal protein S3 262724  
163 4V4P 38 BF 30S ribosomal protein S3 300852  
164 4V4R 6 AC 30S ribosomal protein S3 300852  
165 4V4S 6 AC 30S ribosomal protein S3 300852  
166 4V4T 6 AC 30S ribosomal protein S3 300852  
167 4V5N 3 AC 30S RIBOSOMAL PROTEIN S3 300852  
168 4V5M 3 AC 30S RIBOSOMAL PROTEIN S3 300852  
169 1ML5 8 F 30S RIBOSOMAL PROTEIN S3 562  
170 1JGO 6 F 30S RIBOSOMAL PROTEIN S3 274  
171 1JGP 6 F 30S RIBOSOMAL PROTEIN S3 274  
172 1JGQ 6 F 30S RIBOSOMAL PROTEIN S3 274  
173 4V42 6 AF 30S RIBOSOMAL PROTEIN S3 274  
 
Sequence Clusters for the Sequence Entities in PDB 4JI8
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 197 29
95% 35 198 45
90% 35 198 47
70% 35 198 60
50% 46 283 35
40% 46 283 45
30% 51 334 46
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 199 26
95% 35 199 40
90% 35 199 42
70% 35 199 54
50% 40 277 41
40% 47 335 35
30% 47 336 45
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 18004
95% 35 206 31
90% 35 206 33
70% 40 288 24
50% 40 289 34
40% 40 289 44
30% 40 289 69
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 200 23
95% 35 200 38
90% 35 200 40
70% 35 200 51
50% 40 282 39
40% 40 282 50
30% 45 335 49
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 198 27
95% 35 198 46
90% 35 198 48
70% 35 199 57
50% 35 199 90
40% 35 199 113
30% 35 199 137
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 202 21
95% 37 207 30
90% 37 207 32
70% 37 207 43
50% 45 290 33
40% 45 291 43
30% 45 291 67
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 194 30
95% 35 199 42
90% 35 199 44
70% 35 199 56
50% 35 199 89
40% 35 200 112
30% 40 280 76
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 113 66
95% 35 193 50
90% 35 197 49
70% 35 197 61
50% 35 197 93
40% 35 197 116
30% 35 197 139
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 125 59
95% 32 174 71
90% 32 174 75
70% 32 174 89
50% 32 174 130
40% 32 174 148
30% 32 174 164
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 202 20
95% 36 202 33
90% 36 202 36
70% 36 202 47
50% 41 280 38
40% 41 280 49
30% 41 280 73
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 199 24
95% 35 200 35
90% 35 200 38
70% 35 200 48
50% 40 276 43
40% 40 277 52
30% 40 277 75
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 149 54
95% 35 198 44
90% 35 198 46
70% 35 198 59
50% 35 198 92
40% 35 198 114
30% 35 198 138
Entity #21: Chains: U - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 189 32
95% 35 189 52
90% 35 189 55
70% 35 189 67
50% 35 189 112
40% 35 189 135
30% 35 189 153
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 173 48
95% 32 173 72
90% 32 173 76
70% 32 173 91
50% 33 214 77
40% 33 214 102
30% 33 214 123
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 192 31
95% 35 200 36
90% 35 200 39
70% 35 200 49
50% 40 277 40
40% 40 278 51
30% 40 278 74
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 199 25
95% 35 199 39
90% 35 199 41
70% 35 199 52
50% 41 281 37
40% 41 281 48
30% 41 283 72
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 204 18
95% 42 210 29
90% 42 210 31
70% 42 210 42
50% 42 210 83
40% 42 210 107
30% 48 249 87
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 203 19
95% 36 204 32
90% 36 204 34
70% 36 204 44
50% 41 247 55
40% 41 248 70
30% 41 248 94
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 199 22
95% 36 199 37
90% 36 203 35
70% 36 203 45
50% 43 283 36
40% 44 285 46
30% 50 339 44
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 109 86
95% 35 199 41
90% 35 199 43
70% 35 199 55
50% 40 277 42
40% 40 277 54
30% 45 330 50
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.