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Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Sequence Clustering and Redundancy Reduction Results
4JI8
Cluster # 59 Members. Sequence cutoff: 90% Cluster size: 179 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4Y4O 34 1c, 2c 30S ribosomal protein S3 300852  
2 4W2F 3 AC, CC 30S Ribosomal Protein S3 300852  
3 4Y4P 34 1c, 2c 30S ribosomal protein S3 300852  
4 4W2G 3 AC, CC 30S Ribosomal Protein S3 300852  
5 4LFB 3 C ribosomal protein S3 300852  
6 1VY4 3 AC, CC 30S ribosomal protein S3 300852  
7 4W2I 3 AC, CC 30S Ribosomal Protein S3 300852  
8 1VY5 3 AC, CC 30S ribosomal protein S3 300852  
9 4WQF 36 BC, DC 30S ribosomal protein S3 300852  
10 4W2H 3 AC, CC 30S Ribosomal Protein S3 300852  
11 4WPO 36 BC, DC 30S ribosomal protein S3 300852  
12 4V8I 3 AC, CC 30S Ribosomal Protein S3 274  
13 4JI1 3 C RIBOSOMAL PROTEIN S3 300852  
14 4DR6 3 C 30S ribosomal protein S3 300852  
15 4LF7 3 C ribosomal protein S3 300852  
16 4LF8 3 C ribosomal protein S3 300852  
17 4WQU 36 BC, DC 30S ribosomal protein S3 300852  
18 2VQE 3 C 30S RIBOSOMAL PROTEIN S3 300852  
19 4Z8C 34 1c, 2c 30S ribosomal protein S3 300852  
20 2UUB 3 C 30S RIBOSOMAL PROTEIN S3 300852  
21 4DV6 3 C ribosomal protein S3 300852  
22 4DR5 3 C 30S ribosomal protein S3 300852  
23 4DR2 3 C 30S ribosomal protein S3 300852  
24 4LF9 3 C ribosomal protein S3 300852  
25 4WQY 36 BC, DC 30S ribosomal protein S3 300852  
26 4DUY 3 C ribosomal protein S3 300852  
27 4DV7 3 C ribosomal protein S3 300852  
28 4V8D 3 AF, CF 30S RIBOSOMAL PROTEIN S3 300852  
29 4DR3 3 C 30S ribosomal protein S3 300852  
30 4V90 3 AC 30S RIBOSOMAL PROTEIN S3 300852  
31 4JI3 3 C RIBOSOMAL PROTEIN S3 300852  
32 4JI6 3 C RIBOSOMAL PROTEIN S3 300852  
33 4JI8 3 C RIBOSOMAL PROTEIN S3 300852  
34 2UXC 3 C RIBOSOMAL PROTEIN S3 300852  
35 4V9R 3 AC, CC 30S Ribosomal Protein S3 274  
36 4B3M 3 C 30S RIBOSOMAL PROTEIN S3 300852  
37 4LF4 3 C ribosomal protein S3 300852  
38 4LF6 3 C ribosomal protein S3 300852  
39 4JI7 3 C RIBOSOMAL PROTEIN S3 300852  
40 4B3T 3 C 30S RIBOSOMAL PROTEIN S3 300852  
41 4V8B 3 AF, CF 30S RIBOSOMAL PROTEIN S3 300852  
42 2VQF 3 C 30S RIBOSOMAL PROTEIN S3 300852  
43 2UUA 3 C 30S RIBOSOMAL PROTEIN S3 300852  
44 4V87 33 BF, CF 30S RIBOSOMAL PROTEIN S3 300852  
45 4V95 3 AC, CC 30S Ribosomal Protein S3 274  
46 1VY7 3 AC, CC 30S ribosomal protein S3 300852  
47 4B3R 3 C 30S RIBOSOMAL PROTEIN S3 300852  
48 4LNT 3 QC, XC 30S ribosomal protein S3 300852  
49 4DR1 3 C 30S ribosomal protein S3 300852  
50 4LFA 3 C ribosomal protein S3 300852  
51 4DV4 3 C ribosomal protein S3 300852  
52 4JI0 3 C ribosomal protein S3 300852  
53 4V9S 3 AC, CC 30S Ribosomal Protein S3 274  
54 4JI2 3 C RIBOSOMAL PROTEIN S3 300852  
55 4DR7 3 C 30S ribosomal protein S3 300852  
56 1J5E 3 C 30S RIBOSOMAL PROTEIN S3 274  
57 4DUZ 3 C ribosomal protein S3 300852  
58 4V8G 3 AC, CC 30S Ribosomal Protein S3 300852  
59 4DV3 3 C ribosomal protein S3 300852  
60 4DV5 3 C ribosomal protein S3 300852  
61 2UUC 3 C 30S RIBOSOMAL PROTEIN S3 300852  
62 4LFC 3 C ribosomal protein S3 300852  
63 1FJG 4 C 30S RIBOSOMAL PROTEIN S3 274  
64 3T1Y 3 C 30S ribosomal protein S3 300852  
65 4JI4 3 C RIBOSOMAL PROTEIN S3 300852  
66 1VY6 3 AC, CC 30S ribosomal protein S3 300852  
67 1XMQ 5 C 30S Ribosomal Protein S3 274  
68 4DV0 3 C ribosomal protein S3 300852  
69 4V9B 3 AF, CF 30S RIBOSOMAL PROTEIN S3 300852  
70 4V6F 33 BF, CF 30S ribosomal protein S3 300852  
71 4V8F 33 BF, CF 30S RIBOSOMAL PROTEIN S3 300852  
72 4B3S 3 C 30S RIBOSOMAL PROTEIN S3 300852  
73 4DV2 3 C ribosomal protein S3 300852  
74 4DV1 3 C ribosomal protein S3 300852  
75 1N32 5 C 30S RIBOSOMAL PROTEIN S3 274  
76 1I94 3 C 30S RIBOSOMAL PROTEIN S3 274  
77 4V8H 3 AC, CC 30S Ribosomal Protein S3 300852  
78 4JI5 3 C RIBOSOMAL PROTEIN S3 300852  
79 4W2E 36 c 30S ribosomal protein S3 300852  
80 4V8C 33 CF, DF 30S RIBOSOMAL PROTEIN S3 300852  
81 4LF5 3 C ribosomal protein S3 300852  
82 4V9A 3 AF, CF 30S RIBOSOMAL PROTEIN S3 300852  
83 4V5J 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
84 4V7Y 3 AC, CC 30S ribosomal protein S3 300852  
85 4V8E 33 BF, DF 30S RIBOSOMAL PROTEIN S3 300852  
86 4DR4 3 C 30S ribosomal protein S3 300852  
87 3OTO 3 C 30S RIBOSOMAL PROTEIN S3 300852  
88 2UU9 3 C 30S RIBOSOMAL PROTEIN S3 300852  
89 4V8Q 37 BC 30S RIBOSOMAL PROTEIN S3 300852  
90 1HR0 4 C 30S RIBOSOMAL PROTEIN S3 274  
91 4AQY 3 C 30S RIBOSOMAL PROTEIN S3 274  
92 4NXM 3 C ribosomal protein S3 300852  
93 4V5L 3 AC 30S RIBOSOMAL PROTEIN S3 300852  
94 4V7X 3 AC, CC 30S ribosomal protein S3 300852  
95 1IBL 6 C 30S RIBOSOMAL PROTEIN S3 274  
96 4V7W 3 AC, CC 30S ribosomal protein S3 300852  
97 4WT8 3 C 30S ribosomal protein S3 300852  
98 4NXN 3 C ribosomal protein S3 300852  
99 1XNR 5 C 16S Ribosomal protein S3 274  
100 4LT8 3 QC, XC 30S ribosomal protein S3 300852  
101 4V51 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
102 4V7L 3 AC, CC 30S ribosomal protein S3 300852  
103 4V5R 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
104 1HNZ 4 C 30S RIBOSOMAL PROTEIN S3 274  
105 1XNQ 5 C Ribosomal protein S3 274  
106 4V8A 33 CC, DC 30S ribosomal protein S3 300852  
107 4V5K 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
108 4V5Q 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
109 4V7J 2 Ac, Bc 30S ribosomal protein S3 300852  
110 4V5C 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
111 4V5E 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
112 4L47 3 QC, XC 30S ribosomal protein S3 300852  
113 4V5P 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
114 4V5D 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
115 4V7Z 3 AC, CC 30S ribosomal protein S3 300852  
116 4V8X 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
117 4V5S 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
118 1XMO 5 C 30S ribosomal protein S3 274  
119 3T1H 3 C 30S ribosomal protein S3 300852  
120 2UXD 3 C RIBOSOMAL PROTEIN S3 300852  
121 1N33 5 C 30S RIBOSOMAL PROTEIN S3 274  
122 1IBK 4 C 30S RIBOSOMAL PROTEIN S3 274  
123 4V6G 3 AF, CF 30S RIBOSOMAL PROTEIN S3 300852  
124 4V8N 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
125 4V97 3 AC, CC 30S ribosomal protein S3 300852  
126 1HNW 4 C 30S RIBOSOMAL PROTEIN S3 274  
127 4V7M 3 AC, CC 30S ribosomal protein S3 300852  
128 4TUD 3 QC, XC 30S ribosomal protein S3 300852  
129 1IBM 6 C 30S RIBOSOMAL PROTEIN S3 274  
130 4V6A 3 AC, CC 30S ribosomal protein S3 300852  
131 4TUE 3 QC, XC 30S ribosomal protein S3 300852  
132 4TUA 3 QC, XC 30S ribosomal protein S3 300852  
133 4V7K 2 Ac, Bc 30S ribosomal protein S3 300852  
134 1HNX 4 C 30S RIBOSOMAL PROTEIN S3 274  
135 4TUC 3 QC, XC 30S ribosomal protein S3 300852  
136 4TUB 3 QC, XC 30S ribosomal protein S3 300852  
137 4P70 3 QC, XC 30S ribosomal protein S3 300852  
138 4V8U 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
139 4LSK 3 QC, XC 30S ribosomal protein S3 300852  
140 4P6F 3 QC, XC 30S ribosomal protein S3 300852  
141 4V67 5 AC, CC 30S ribosomal protein S3 274  
142 4V5F 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
143 1VVJ 3 QC, XC 30S ribosomal protein S3 300852  
144 4LFZ 3 QC, XC 30S ribosomal protein S3 300852  
145 2E5L 4 C 30S ribosomal protein S3 274  
146 2HHH 3 C 30S ribosomal protein S3 300852  
147 4OX9 3 C 30S ribosomal protein S3 300852  
148 2UXB 3 C RIBOSOMAL PROTEIN S3 300852  
149 1I96 3 C 30S RIBOSOMAL PROTEIN S3 274  
150 1N34 4 C 30S RIBOSOMAL PROTEIN S3 274  
151 4V5A 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
152 4V63 5 AC, CC 30S ribosomal protein S3 262724  
153 4L71 3 QC, XC 30S ribosomal protein S3 300852  
154 4KVB 3 C 30S ribosomal protein S3 262724  
155 4V8J 3 AC, CC 30S ribosomal protein S3 300852  
156 1N36 3 C 30S RIBOSOMAL PROTEIN S3 274  
157 2ZM6 3 C 30S ribosomal protein S3 274  
158 4LEL 3 QC, XC 30S ribosomal protein S3 300852  
159 2F4V 4 C 30S ribosomal protein S3 274  
160 4V5G 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
161 1I97 3 C 30S RIBOSOMAL PROTEIN S3 274  
162 1I95 3 C 30S RIBOSOMAL PROTEIN S3 274  
163 4V8O 3 AC 30S RIBOSOMAL PROTEIN S3 300852  
164 4V4Y 5 AF 30S ribosomal protein S3 300852  
165 4V4J 36 d 30S ribosomal protein S3 262724  
166 4V4X 5 AF 30S ribosomal protein S3 300852  
167 4V4Z 6 AF 30S ribosomal protein S3 300852  
168 4V4I 36 d 30S ribosomal protein S3 262724  
169 4V4P 38 BF 30S ribosomal protein S3 300852  
170 4V4R 6 AC 30S ribosomal protein S3 300852  
171 4V4S 6 AC 30S ribosomal protein S3 300852  
172 4V4T 6 AC 30S ribosomal protein S3 300852  
173 4V5N 3 AC 30S RIBOSOMAL PROTEIN S3 300852  
174 4V5M 3 AC 30S RIBOSOMAL PROTEIN S3 300852  
175 1ML5 8 F 30S RIBOSOMAL PROTEIN S3 562  
176 1JGO 6 F 30S RIBOSOMAL PROTEIN S3 274  
177 1JGP 6 F 30S RIBOSOMAL PROTEIN S3 274  
178 1JGQ 6 F 30S RIBOSOMAL PROTEIN S3 274  
179 4V42 6 AF 30S RIBOSOMAL PROTEIN S3 274  
 
Sequence Clusters for the Sequence Entities in PDB 4JI8
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 204 25
95% 36 205 45
90% 36 205 47
70% 36 205 57
50% 47 290 35
40% 47 290 45
30% 52 342 46
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 206 23
95% 36 206 41
90% 36 206 43
70% 36 206 52
50% 41 284 41
40% 48 343 34
30% 48 344 45
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 18091
95% 36 213 31
90% 36 213 34
70% 41 295 24
50% 41 296 34
40% 41 296 44
30% 41 296 67
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 207 20
95% 36 207 39
90% 36 207 41
70% 36 207 50
50% 41 289 39
40% 41 289 49
30% 46 343 48
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 205 24
95% 36 205 46
90% 36 205 48
70% 36 206 55
50% 36 206 85
40% 36 206 110
30% 36 206 129
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 209 18
95% 38 214 29
90% 38 214 32
70% 38 214 42
50% 46 297 33
40% 46 298 43
30% 46 298 65
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 201 29
95% 36 206 43
90% 36 206 45
70% 36 206 54
50% 36 206 84
40% 36 207 109
30% 41 287 74
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 120 62
95% 36 200 47
90% 36 204 49
70% 36 204 58
50% 36 204 87
40% 36 204 112
30% 36 204 131
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 131 56
95% 33 180 55
90% 33 180 57
70% 33 180 72
50% 33 180 119
40% 33 180 143
30% 33 180 159
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 209 17
95% 37 209 33
90% 37 209 37
70% 37 209 46
50% 42 287 38
40% 42 287 48
30% 42 287 71
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 206 21
95% 36 207 35
90% 36 207 38
70% 36 207 47
50% 41 283 43
40% 41 284 51
30% 41 284 73
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 156 52
95% 36 205 44
90% 36 205 46
70% 36 205 56
50% 36 205 86
40% 36 205 111
30% 36 205 130
Entity #21: Chains: U - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 196 32
95% 36 196 51
90% 36 196 53
70% 36 196 64
50% 36 196 97
40% 36 196 120
30% 36 196 143
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 179 36
95% 33 179 56
90% 33 179 59
70% 33 179 73
50% 34 220 77
40% 34 220 100
30% 34 220 120
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 199 30
95% 36 207 37
90% 36 207 40
70% 36 207 49
50% 41 284 40
40% 41 285 50
30% 41 285 72
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 206 22
95% 36 206 40
90% 36 206 42
70% 36 206 51
50% 42 288 37
40% 42 288 47
30% 42 290 69
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 211 15
95% 43 217 28
90% 43 217 31
70% 43 217 41
50% 43 217 78
40% 43 217 102
30% 49 256 85
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 210 16
95% 37 211 32
90% 37 211 35
70% 37 211 44
50% 42 254 51
40% 42 255 67
30% 42 255 88
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 206 19
95% 37 206 38
90% 37 210 36
70% 37 210 45
50% 44 290 36
40% 45 292 46
30% 51 347 44
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 116 81
95% 36 206 42
90% 36 206 44
70% 36 206 53
50% 41 284 42
40% 41 284 52
30% 46 338 49
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.