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Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Sequence Clustering and Redundancy Reduction Results
4JI8
Cluster # 66 Members. Sequence cutoff: 90% Cluster size: 166 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4W2F 3 AC, CC 30S Ribosomal Protein S3 300852  
2 4W2G 3 AC, CC 30S Ribosomal Protein S3 300852  
3 4LFB 3 C ribosomal protein S3 300852  
4 1VY4 3 AC, CC 30S ribosomal protein S3 300852  
5 4W2I 3 AC, CC 30S Ribosomal Protein S3 300852  
6 1VY5 3 AC, CC 30S ribosomal protein S3 300852  
7 4W2H 3 AC, CC 30S Ribosomal Protein S3 300852  
8 4V8I 3 AC, CC 30S Ribosomal Protein S3 274  
9 4JI1 3 C RIBOSOMAL PROTEIN S3 300852  
10 4DR6 3 C 30S ribosomal protein S3 300852  
11 4LF7 3 C ribosomal protein S3 300852  
12 4LF8 3 C ribosomal protein S3 300852  
13 2VQE 3 C 30S RIBOSOMAL PROTEIN S3 300852  
14 2UUB 3 C 30S RIBOSOMAL PROTEIN S3 300852  
15 4DV6 3 C ribosomal protein S3 300852  
16 4DR5 3 C 30S ribosomal protein S3 300852  
17 4DR2 3 C 30S ribosomal protein S3 300852  
18 4LF9 3 C ribosomal protein S3 300852  
19 4DUY 3 C ribosomal protein S3 300852  
20 4DV7 3 C ribosomal protein S3 300852  
21 4V8D 3 AF, CF 30S RIBOSOMAL PROTEIN S3 300852  
22 4DR3 3 C 30S ribosomal protein S3 300852  
23 4V90 3 AC 30S RIBOSOMAL PROTEIN S3 300852  
24 4JI3 3 C RIBOSOMAL PROTEIN S3 300852  
25 4JI6 3 C RIBOSOMAL PROTEIN S3 300852  
26 4JI8 3 C RIBOSOMAL PROTEIN S3 300852  
27 2UXC 3 C RIBOSOMAL PROTEIN S3 300852  
28 4V9R 3 AC, CC 30S Ribosomal Protein S3 274  
29 4B3M 3 C 30S RIBOSOMAL PROTEIN S3 300852  
30 4LF4 3 C ribosomal protein S3 300852  
31 4LF6 3 C ribosomal protein S3 300852  
32 4JI7 3 C RIBOSOMAL PROTEIN S3 300852  
33 4B3T 3 C 30S RIBOSOMAL PROTEIN S3 300852  
34 4V8B 3 AF, CF 30S RIBOSOMAL PROTEIN S3 300852  
35 2VQF 3 C 30S RIBOSOMAL PROTEIN S3 300852  
36 2UUA 3 C 30S RIBOSOMAL PROTEIN S3 300852  
37 4V87 33 BF, CF 30S RIBOSOMAL PROTEIN S3 300852  
38 4V95 3 AC, CC 30S Ribosomal Protein S3 274  
39 1VY7 3 AC, CC 30S ribosomal protein S3 300852  
40 4B3R 3 C 30S RIBOSOMAL PROTEIN S3 300852  
41 4LNT 3 QC, XC 30S ribosomal protein S3 300852  
42 4DR1 3 C 30S ribosomal protein S3 300852  
43 4LFA 3 C ribosomal protein S3 300852  
44 4DV4 3 C ribosomal protein S3 300852  
45 4JI0 3 C ribosomal protein S3 300852  
46 4V9S 3 AC, CC 30S Ribosomal Protein S3 274  
47 4JI2 3 C RIBOSOMAL PROTEIN S3 300852  
48 4DR7 3 C 30S ribosomal protein S3 300852  
49 1J5E 3 C 30S RIBOSOMAL PROTEIN S3 274  
50 4DUZ 3 C ribosomal protein S3 300852  
51 4V8G 3 AC, CC 30S Ribosomal Protein S3 300852  
52 4DV3 3 C ribosomal protein S3 300852  
53 4DV5 3 C ribosomal protein S3 300852  
54 2UUC 3 C 30S RIBOSOMAL PROTEIN S3 300852  
55 4LFC 3 C ribosomal protein S3 300852  
56 1FJG 4 C 30S RIBOSOMAL PROTEIN S3 274  
57 3T1Y 3 C 30S ribosomal protein S3 300852  
58 4JI4 3 C RIBOSOMAL PROTEIN S3 300852  
59 1VY6 3 AC, CC 30S ribosomal protein S3 300852  
60 1XMQ 5 C 30S Ribosomal Protein S3 274  
61 4DV0 3 C ribosomal protein S3 300852  
62 4V9B 3 AF, CF 30S RIBOSOMAL PROTEIN S3 300852  
63 4V6F 33 BF, CF 30S ribosomal protein S3 300852  
64 4V8F 33 BF, CF 30S RIBOSOMAL PROTEIN S3 300852  
65 4B3S 3 C 30S RIBOSOMAL PROTEIN S3 300852  
66 4DV2 3 C ribosomal protein S3 300852  
67 4DV1 3 C ribosomal protein S3 300852  
68 1N32 5 C 30S RIBOSOMAL PROTEIN S3 274  
69 1I94 3 C 30S RIBOSOMAL PROTEIN S3 274  
70 4V8H 3 AC, CC 30S Ribosomal Protein S3 300852  
71 4JI5 3 C RIBOSOMAL PROTEIN S3 300852  
72 4W2E 36 c 30S ribosomal protein S3 300852  
73 4V8C 33 CF, DF 30S RIBOSOMAL PROTEIN S3 300852  
74 4LF5 3 C ribosomal protein S3 300852  
75 4V9A 3 AF, CF 30S RIBOSOMAL PROTEIN S3 300852  
76 4V5J 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
77 4V7Y 3 AC, CC 30S ribosomal protein S3 300852  
78 4V8E 33 BF, DF 30S RIBOSOMAL PROTEIN S3 300852  
79 4DR4 3 C 30S ribosomal protein S3 300852  
80 3OTO 3 C 30S RIBOSOMAL PROTEIN S3 300852  
81 2UU9 3 C 30S RIBOSOMAL PROTEIN S3 300852  
82 4V8Q 37 BC 30S RIBOSOMAL PROTEIN S3 300852  
83 1HR0 4 C 30S RIBOSOMAL PROTEIN S3 274  
84 4AQY 3 C 30S RIBOSOMAL PROTEIN S3 274  
85 4NXM 3 C ribosomal protein S3 300852  
86 4V5L 3 AC 30S RIBOSOMAL PROTEIN S3 300852  
87 4V7X 3 AC, CC 30S ribosomal protein S3 300852  
88 1IBL 6 C 30S RIBOSOMAL PROTEIN S3 274  
89 4V7W 3 AC, CC 30S ribosomal protein S3 300852  
90 4NXN 3 C ribosomal protein S3 300852  
91 1XNR 5 C 16S Ribosomal protein S3 274  
92 4LT8 3 QC, XC 30S ribosomal protein S3 300852  
93 4V51 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
94 4V7L 3 AC, CC 30S ribosomal protein S3 300852  
95 4V5R 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
96 1HNZ 4 C 30S RIBOSOMAL PROTEIN S3 274  
97 1XNQ 5 C Ribosomal protein S3 274  
98 4V8A 33 CC, DC 30S ribosomal protein S3 300852  
99 4V5K 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
100 4V5Q 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
101 4V7J 2 Ac, Bc 30S ribosomal protein S3 300852  
102 4V5C 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
103 4V5E 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
104 4L47 3 QC, XC 30S ribosomal protein S3 300852  
105 4V5P 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
106 4V5D 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
107 4V7Z 3 AC, CC 30S ribosomal protein S3 300852  
108 4V8X 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
109 4V5S 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
110 1XMO 5 C 30S ribosomal protein S3 274  
111 3T1H 3 C 30S ribosomal protein S3 300852  
112 2UXD 3 C RIBOSOMAL PROTEIN S3 300852  
113 1N33 5 C 30S RIBOSOMAL PROTEIN S3 274  
114 1IBK 4 C 30S RIBOSOMAL PROTEIN S3 274  
115 4V6G 3 AF, CF 30S RIBOSOMAL PROTEIN S3 300852  
116 4V8N 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
117 4V97 3 AC, CC 30S ribosomal protein S3 300852  
118 1HNW 4 C 30S RIBOSOMAL PROTEIN S3 274  
119 4V7M 3 AC, CC 30S ribosomal protein S3 300852  
120 1IBM 6 C 30S RIBOSOMAL PROTEIN S3 274  
121 4V6A 3 AC, CC 30S ribosomal protein S3 300852  
122 4V7K 2 Ac, Bc 30S ribosomal protein S3 300852  
123 1HNX 4 C 30S RIBOSOMAL PROTEIN S3 274  
124 4P70 3 QC, XC 30S ribosomal protein S3 300852  
125 4V8U 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
126 4LSK 3 QC, XC 30S ribosomal protein S3 300852  
127 4P6F 3 QC, XC 30S ribosomal protein S3 300852  
128 4V67 5 AC, CC 30S ribosomal protein S3 274  
129 4V5F 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
130 1VVJ 3 QC, XC 30S ribosomal protein S3 300852  
131 4LFZ 3 QC, XC 30S ribosomal protein S3 300852  
132 2E5L 4 C 30S ribosomal protein S3 274  
133 2HHH 3 C 30S ribosomal protein S3 300852  
134 4OX9 3 C 30S ribosomal protein S3 300852  
135 2UXB 3 C RIBOSOMAL PROTEIN S3 300852  
136 1I96 3 C 30S RIBOSOMAL PROTEIN S3 274  
137 1N34 4 C 30S RIBOSOMAL PROTEIN S3 274  
138 4V5A 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
139 4V63 5 AC, CC 30S ribosomal protein S3 262724  
140 4L71 3 QC, XC 30S ribosomal protein S3 300852  
141 4KVB 3 C 30S ribosomal protein S3 262724  
142 4V8J 3 AC, CC 30S ribosomal protein S3 300852  
143 1N36 3 C 30S RIBOSOMAL PROTEIN S3 274  
144 2ZM6 3 C 30S ribosomal protein S3 274  
145 4LEL 3 QC, XC 30S ribosomal protein S3 300852  
146 2F4V 4 C 30S ribosomal protein S3 274  
147 4V5G 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
148 1I97 3 C 30S RIBOSOMAL PROTEIN S3 274  
149 1I95 3 C 30S RIBOSOMAL PROTEIN S3 274  
150 4V8O 3 AC 30S RIBOSOMAL PROTEIN S3 300852  
151 4V4Y 5 AF 30S ribosomal protein S3 300852  
152 4V4J 36 d 30S ribosomal protein S3 262724  
153 4V4X 5 AF 30S ribosomal protein S3 300852  
154 4V4Z 6 AF 30S ribosomal protein S3 300852  
155 4V4I 36 d 30S ribosomal protein S3 262724  
156 4V4P 38 BF 30S ribosomal protein S3 300852  
157 4V4R 6 AC 30S ribosomal protein S3 300852  
158 4V4S 6 AC 30S ribosomal protein S3 300852  
159 4V4T 6 AC 30S ribosomal protein S3 300852  
160 4V5N 3 AC 30S RIBOSOMAL PROTEIN S3 300852  
161 4V5M 3 AC 30S RIBOSOMAL PROTEIN S3 300852  
162 1ML5 8 F 30S RIBOSOMAL PROTEIN S3 562  
163 1JGO 6 F 30S RIBOSOMAL PROTEIN S3 274  
164 1JGP 6 F 30S RIBOSOMAL PROTEIN S3 274  
165 1JGQ 6 F 30S RIBOSOMAL PROTEIN S3 274  
166 4V42 6 AF 30S RIBOSOMAL PROTEIN S3 274  
 
Sequence Clusters for the Sequence Entities in PDB 4JI8
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 187 27
95% 29 188 47
90% 29 188 50
70% 29 188 60
50% 39 269 34
40% 39 269 46
30% 39 274 65
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 189 25
95% 29 189 43
90% 29 189 46
70% 29 189 56
50% 33 263 41
40% 40 316 35
30% 40 316 44
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 17436
95% 29 196 35
90% 29 196 37
70% 33 275 24
50% 33 275 33
40% 33 275 45
30% 33 275 68
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 190 22
95% 29 190 41
90% 29 190 44
70% 29 190 54
50% 33 268 38
40% 33 268 51
30% 38 317 50
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 188 26
95% 29 188 48
90% 29 188 51
70% 29 188 61
50% 29 188 94
40% 29 188 119
30% 29 188 142
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 192 20
95% 31 197 33
90% 31 197 35
70% 31 197 47
50% 38 276 32
40% 38 276 43
30% 38 276 67
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 184 28
95% 29 189 45
90% 29 189 48
70% 29 189 58
50% 29 189 92
40% 29 189 117
30% 33 266 76
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 21 104 54
95% 29 183 49
90% 29 187 52
70% 29 187 62
50% 29 187 95
40% 29 187 120
30% 29 187 143
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 119 48
95% 26 168 61
90% 26 168 64
70% 26 168 80
50% 26 168 117
40% 26 168 139
30% 26 168 161
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 170 37
95% 27 170 59
90% 27 170 63
70% 27 170 78
50% 34 266 37
40% 34 266 49
30% 34 266 72
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 189 23
95% 29 190 38
90% 29 190 42
70% 29 190 52
50% 29 190 91
40% 33 263 53
30% 33 263 75
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 140 42
95% 29 188 46
90% 29 188 49
70% 29 188 59
50% 29 188 93
40% 29 188 118
30% 29 188 141
Entity #21: Chains: U - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 179 34
95% 29 179 53
90% 29 179 55
70% 29 179 68
50% 29 179 105
40% 29 179 132
30% 29 179 151
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 26 166 38
95% 26 166 63
90% 26 166 66
70% 26 166 82
50% 27 206 75
40% 27 206 100
30% 27 206 120
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 182 29
95% 29 190 39
90% 29 190 43
70% 29 190 53
50% 33 263 39
40% 33 264 52
30% 33 264 74
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 189 24
95% 29 189 42
90% 29 189 45
70% 29 189 55
50% 34 267 36
40% 34 267 48
30% 34 269 71
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 194 18
95% 36 200 29
90% 36 200 30
70% 36 200 44
50% 36 200 86
40% 36 200 108
30% 41 236 94
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 193 19
95% 30 194 36
90% 30 194 38
70% 30 194 49
50% 34 234 56
40% 34 235 74
30% 34 235 96
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 189 21
95% 30 189 40
90% 30 193 39
70% 30 193 51
50% 36 269 35
40% 37 271 47
30% 43 321 43
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 102 76
95% 29 189 44
90% 29 189 47
70% 29 189 57
50% 33 263 40
40% 33 263 54
30% 38 312 53
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.