Sequence Similarity Clusters for the Entities in PDB 4JI8

Entity #1 | Chains: A
16S rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 267 37
95 % 56 268 51
90 % 56 268 54
70 % 56 268 65
50 % 74 394 25
40 % 74 394 37
30 % 79 490 29
Entity #11 | Chains: K
RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 269 35
95 % 56 269 47
90 % 56 269 50
70 % 56 269 60
50 % 68 388 34
40 % 75 487 18
30 % 75 487 31
Entity #12 | Chains: L
RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 21334
95 % 56 276 36
90 % 56 276 40
70 % 68 401 20
50 % 68 403 23
40 % 68 403 34
30 % 68 403 55
Entity #13 | Chains: M
RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 270 33
95 % 56 270 44
90 % 56 270 48
70 % 56 270 57
50 % 68 393 32
40 % 68 393 44
30 % 73 491 32
Entity #14 | Chains: N
RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 268 36
95 % 56 268 52
90 % 56 268 55
70 % 56 270 58
50 % 56 270 87
40 % 56 270 108
30 % 56 270 120
Entity #15 | Chains: O
RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 272 28
95 % 58 277 35
90 % 58 277 39
70 % 58 277 50
50 % 73 401 24
40 % 73 404 33
30 % 73 404 54
Entity #16 | Chains: P
RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 264 38
95 % 56 269 49
90 % 56 269 52
70 % 56 269 62
50 % 56 271 86
40 % 56 271 106
30 % 68 389 63
Entity #17 | Chains: Q
RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 48 176 55
95 % 56 263 53
90 % 56 267 56
70 % 56 267 66
50 % 56 267 90
40 % 56 267 111
30 % 56 267 123
Entity #18 | Chains: R
RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 49 183 53
95 % 50 234 62
90 % 50 234 66
70 % 50 234 77
50 % 50 234 103
40 % 50 234 129
30 % 50 234 140
Entity #19 | Chains: S
RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 272 27
95 % 57 272 40
90 % 57 272 45
70 % 57 272 54
50 % 69 393 28
40 % 69 393 39
30 % 69 393 58
Entity #2 | Chains: B
RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 269 31
95 % 56 270 41
90 % 56 270 46
70 % 56 270 55
50 % 68 387 33
40 % 68 390 42
30 % 68 390 61
Entity #20 | Chains: T
RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 217 49
95 % 56 268 50
90 % 56 268 53
70 % 56 268 64
50 % 56 268 89
40 % 56 268 110
30 % 56 268 122
Entity #21 | Chains: U
RIBOSOMAL PROTEIN THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 259 41
95 % 56 259 56
90 % 56 259 59
70 % 56 259 69
50 % 56 259 94
40 % 56 259 116
30 % 56 259 129
Entity #3 | Chains: C
RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 50 233 45
95 % 50 233 63
90 % 50 233 67
70 % 50 233 78
50 % 52 301 78
40 % 52 301 96
30 % 52 301 113
Entity #4 | Chains: D
RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 262 39
95 % 56 270 42
90 % 56 270 47
70 % 56 270 56
50 % 68 389 31
40 % 68 392 40
30 % 68 392 60
Entity #5 | Chains: E
RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 269 34
95 % 56 269 46
90 % 56 269 49
70 % 56 269 59
50 % 69 393 29
40 % 69 393 41
30 % 69 395 57
Entity #6 | Chains: F
RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 274 24
95 % 63 280 33
90 % 63 280 38
70 % 63 280 49
50 % 63 280 83
40 % 63 280 102
30 % 75 334 87
Entity #7 | Chains: G
RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 273 26
95 % 57 274 37
90 % 57 274 41
70 % 57 274 51
50 % 68 336 65
40 % 68 339 75
30 % 68 339 89
Entity #8 | Chains: H
RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 269 32
95 % 57 269 43
90 % 57 273 42
70 % 57 273 52
50 % 71 394 26
40 % 72 398 36
30 % 78 500 28
Entity #9 | Chains: I
RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 52 178 65
95 % 56 269 48
90 % 56 269 51
70 % 56 269 61
50 % 68 388 35
40 % 68 388 45
30 % 73 488 33

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4Y4O 34 1c, 2c 30S ribosomal protein S3 274
2 5J8B 36 c 30S ribosomal protein S3 274
3 4W2F 3 AC, CC 30S Ribosomal Protein S3 274
4 4Y4P 34 1c, 2c 30S ribosomal protein S3 274
5 5J4B 34 1c, 2c 30S ribosomal protein S3 274
6 4W2G 3 AC, CC 30S Ribosomal Protein S3 274
7 4LFB 3 C ribosomal protein S3 274
8 1VY4 3 AC, CC 30S ribosomal protein S3 274
9 4W2I 3 AC, CC 30S Ribosomal Protein S3 274
10 1VY5 3 AC, CC 30S ribosomal protein S3 274
11 5HCQ 34 1c, 2c 30S ribosomal protein S3 274
12 4WQF 36 BC, DC 30S ribosomal protein S3 274
13 4W2H 3 AC, CC 30S Ribosomal Protein S3 274
14 4WPO 36 BC, DC 30S ribosomal protein S3 274
15 4V8I 3 AC, CC 30S Ribosomal Protein S3 274
16 4JI1 3 C RIBOSOMAL PROTEIN S3 274
17 4Z3S 34 1c, 2c 30S ribosomal protein S3 274
18 5DOY 34 1c, 2c 30S Ribosomal Protein S3 274
19 5HD1 34 1c, 2c 30S ribosomal protein S3 274
20 4DR6 3 C 30S ribosomal protein S3 274
21 4LF7 3 C ribosomal protein S3 274
22 4LF8 3 C ribosomal protein S3 274
23 4WSD 3 22, 2E 30S ribosomal protein S3 274
24 4WQU 36 BC, DC 30S ribosomal protein S3 274
25 5E81 3 22, 2E 30S ribosomal protein S3 274
26 2VQE 3 C 30S RIBOSOMAL PROTEIN S3 274
27 4Z8C 34 1c, 2c 30S ribosomal protein S3 274
28 5HCR 34 1c, 2c 30S ribosomal protein S3 274
29 2UUB 3 C 30S RIBOSOMAL PROTEIN S3 274
30 4DV6 3 C ribosomal protein S3 274
31 5IBB 3 22, 2E 30S ribosomal protein S3 274
32 4DR5 3 C 30S ribosomal protein S3 274
33 5J4C 34 1c, 2c 30S ribosomal protein S3 274
34 4DR2 3 C 30S ribosomal protein S3 274
35 4WRO 7 22, 2E 30S ribosomal protein S3 274
36 4WQ1 3 22, 2E 30S ribosomal protein S3 274
37 4LF9 3 C ribosomal protein S3 274
38 4WQY 36 BC, DC 30S ribosomal protein S3 274
39 4DUY 3 C ribosomal protein S3 274
40 4DV7 3 C ribosomal protein S3 274
41 4WRA 3 22, 2E 30S ribosomal protein S3 274
42 5IB7 3 22, 2E 30S ribosomal protein S3 274
43 5HCP 34 1c, 2c 30S ribosomal protein S3 274
44 4V8D 3 AF, CF 30S RIBOSOMAL PROTEIN S3 274
45 4DR3 3 C 30S ribosomal protein S3 274
46 4V90 3 AC 30S RIBOSOMAL PROTEIN S3 274
47 4JI3 3 C RIBOSOMAL PROTEIN S3 274
48 4WQR 3 22, 2E 30S ribosomal protein S3 274
49 4JI6 3 C RIBOSOMAL PROTEIN S3 274
50 4JI8 3 C RIBOSOMAL PROTEIN S3 274
51 2UXC 3 C RIBOSOMAL PROTEIN S3 274
52 5IB8 3 22, 2E 30S ribosomal protein S3 274
53 4V9R 3 AC, CC 30S Ribosomal Protein S3 274
54 4B3M 3 C 30S RIBOSOMAL PROTEIN S3 274
55 5EL6 3 22, 2E 30S ribosomal protein S3 274
56 5EL7 3 22, 2E 30S ribosomal protein S3 274
57 4LF4 3 C ribosomal protein S3 274
58 5DFE 37 QC, XC 30S ribosomal protein S3 274
59 4LF6 3 C ribosomal protein S3 274
60 4JI7 3 C RIBOSOMAL PROTEIN S3 274
61 4WU1 3 22, 2E 30S ribosomal protein S3 274
62 5EL4 3 22, 2E 30S ribosomal protein S3 274
63 4B3T 3 C 30S RIBOSOMAL PROTEIN S3 274
64 4WR6 3 22, 2E 30S ribosomal protein S3 274
65 4V8B 3 AF, CF 30S RIBOSOMAL PROTEIN S3 274
66 5HAU 36 1c, 2c 30S ribosomal protein S3 274
67 2VQF 3 C 30S RIBOSOMAL PROTEIN S3 274
68 2UUA 3 C 30S RIBOSOMAL PROTEIN S3 274
69 4V87 33 BF, CF 30S RIBOSOMAL PROTEIN S3 274
70 4V95 3 AC, CC 30S Ribosomal Protein S3 274
71 1VY7 3 AC, CC 30S ribosomal protein S3 274
72 5E7K 3 22, 2E 30S ribosomal protein S3 274
73 5EL5 3 22, 2E 30S ribosomal protein S3 274
74 4B3R 3 C 30S RIBOSOMAL PROTEIN S3 274
75 4LNT 3 QC, XC 30S ribosomal protein S3 274
76 4DR1 3 C 30S ribosomal protein S3 274
77 4LFA 3 C ribosomal protein S3 274
78 4DV4 3 C ribosomal protein S3 274
79 4YZV 3 QC, XC 30S ribosomal protein S3 274
80 4JI0 3 C ribosomal protein S3 274
81 4V9S 3 AC, CC 30S Ribosomal Protein S3 274
82 4JI2 3 C RIBOSOMAL PROTEIN S3 274
83 4DR7 3 C 30S ribosomal protein S3 274
84 1J5E 3 C 30S RIBOSOMAL PROTEIN S3 274
85 4DUZ 3 C ribosomal protein S3 274
86 4V8G 3 AC, CC 30S Ribosomal Protein S3 274
87 4DV3 3 C ribosomal protein S3 274
88 4DV5 3 C ribosomal protein S3 274
89 2UUC 3 C 30S RIBOSOMAL PROTEIN S3 274
90 4LFC 3 C ribosomal protein S3 274
91 1FJG 4 C 30S RIBOSOMAL PROTEIN S3 274
92 3T1Y 3 C 30S ribosomal protein S3 274
93 4WZO 3 22, 2E 30S ribosomal protein S3 274
94 4JI4 3 C RIBOSOMAL PROTEIN S3 274
95 1VY6 3 AC, CC 30S ribosomal protein S3 274
96 1XMQ 5 C 30S Ribosomal Protein S3 274
97 4DV0 3 C ribosomal protein S3 274
98 4V9B 3 AF, CF 30S RIBOSOMAL PROTEIN S3 274
99 4V6F 33 BF, CF 30S ribosomal protein S3 274
100 4V8F 33 BF, CF 30S RIBOSOMAL PROTEIN S3 274
101 4B3S 3 C 30S RIBOSOMAL PROTEIN S3 274
102 4DV2 3 C ribosomal protein S3 274
103 4DV1 3 C ribosomal protein S3 274
104 1N32 5 C 30S RIBOSOMAL PROTEIN S3 274
105 1I94 3 C 30S RIBOSOMAL PROTEIN S3 274
106 4V8H 3 AC, CC 30S Ribosomal Protein S3 274
107 4JI5 3 C RIBOSOMAL PROTEIN S3 274
108 4W2E 36 c 30S ribosomal protein S3 274
109 4V8C 33 CF, DF 30S RIBOSOMAL PROTEIN S3 274
110 5BR8 3 C 30S ribosomal protein S3 274
111 4LF5 3 C ribosomal protein S3 274
112 5J4D 37 LA, QC 30S ribosomal protein S3 274
113 4V9A 3 AF, CF 30S RIBOSOMAL PROTEIN S3 274
114 4V5J 3 AC, CC 30S RIBOSOMAL PROTEIN S3 274
115 4V7Y 3 AC, CC 30S ribosomal protein S3 274
116 4V8E 33 BF, DF 30S RIBOSOMAL PROTEIN S3 274
117 5J30 34 QC, XC 30S ribosomal protein S3 274
118 4DR4 3 C 30S ribosomal protein S3 274
119 4WZD 3 22, 2E 30S ribosomal protein S3 274
120 3OTO 3 C 30S RIBOSOMAL PROTEIN S3 274
121 2UU9 3 C 30S RIBOSOMAL PROTEIN S3 274
122 4V8Q 37 BC 30S RIBOSOMAL PROTEIN S3 274
123 1HR0 4 C 30S RIBOSOMAL PROTEIN S3 274
124 4AQY 3 C 30S RIBOSOMAL PROTEIN S3 274
125 4W4G 3 QC, XC 30S ribosomal protein S3 274
126 4NXM 3 C ribosomal protein S3 274
127 4V5L 3 AC 30S RIBOSOMAL PROTEIN S3 274
128 4YPB 3 QC, XC 30S ribosomal protein S3 274
129 4V7X 3 AC, CC 30S ribosomal protein S3 274
130 1IBL 6 C 30S RIBOSOMAL PROTEIN S3 274
131 4V7W 3 AC, CC 30S ribosomal protein S3 274
132 4WT1 3 22, 2E 30S ribosomal protein S3 274
133 4WT8 3 AC 30S ribosomal protein S3 274
134 5DOX 34 1c, 2c 30S ribosomal protein S3 274
135 4NXN 3 C ribosomal protein S3 274
136 1XNR 5 C 16S Ribosomal protein S3 274
137 4LT8 3 QC, XC 30S ribosomal protein S3 274
138 4V51 3 AC, CC 30S RIBOSOMAL PROTEIN S3 274
139 4V7L 3 AC, CC 30S ribosomal protein S3 274
140 4V5R 3 AC, CC 30S RIBOSOMAL PROTEIN S3 274
141 1HNZ 4 C 30S RIBOSOMAL PROTEIN S3 274
142 1XNQ 5 C Ribosomal protein S3 274
143 4V8A 33 CC, DC 30S ribosomal protein S3 274
144 4V5K 3 AC, CC 30S RIBOSOMAL PROTEIN S3 274
145 4V5Q 3 AC, CC 30S RIBOSOMAL PROTEIN S3 274
146 4V7J 2 Ac, Bc 30S ribosomal protein S3 274
147 5J3C 34 QC, XC 30S ribosomal protein S3 274
148 4V5C 3 AC, CC 30S RIBOSOMAL PROTEIN S3 274
149 4V5E 3 AC, CC 30S RIBOSOMAL PROTEIN S3 274
150 4L47 3 QC, XC 30S ribosomal protein S3 274
151 4V5P 3 AC, CC 30S RIBOSOMAL PROTEIN S3 274
152 4ZSN 3 QC, XC 30S ribosomal protein S3 274
153 4V5D 3 AC, CC 30S RIBOSOMAL PROTEIN S3 274
154 4V7Z 3 AC, CC 30S ribosomal protein S3 274
155 4V8X 3 AC, CC 30S RIBOSOMAL PROTEIN S3 274
156 4V5S 3 AC, CC 30S RIBOSOMAL PROTEIN S3 274
157 1XMO 5 C 30S ribosomal protein S3 274
158 3T1H 3 C 30S ribosomal protein S3 274
159 2UXD 3 C RIBOSOMAL PROTEIN S3 274
160 1N33 5 C 30S RIBOSOMAL PROTEIN S3 274
161 1IBK 4 C 30S RIBOSOMAL PROTEIN S3 274
162 4V6G 3 AF, CF 30S RIBOSOMAL PROTEIN S3 274
163 4V8N 3 AC, CC 30S RIBOSOMAL PROTEIN S3 274
164 4V97 3 AC, CC 30S ribosomal protein S3 274
165 1HNW 4 C 30S RIBOSOMAL PROTEIN S3 274
166 4V7M 3 AC, CC 30S ribosomal protein S3 274
167 4WSM 3 22, 2E 30S ribosomal protein S3 274
168 4TUD 3 QC, XC 30S ribosomal protein S3 274
169 1IBM 6 C 30S RIBOSOMAL PROTEIN S3 274
170 4V6A 3 AC, CC 30S ribosomal protein S3 274
171 4TUE 3 QC, XC 30S ribosomal protein S3 274
172 4TUA 3 QC, XC 30S ribosomal protein S3 274
173 4V7K 2 Ac, Bc 30S ribosomal protein S3 274
174 4YY3 3 C 30S ribosomal protein S3 274
175 1HNX 4 C 30S RIBOSOMAL PROTEIN S3 274
176 4TUC 3 QC, XC 30S ribosomal protein S3 274
177 4TUB 3 QC, XC 30S ribosomal protein S3 274
178 4P70 3 QC, XC 30S ribosomal protein S3 274
179 4V8U 3 AC, CC 30S RIBOSOMAL PROTEIN S3 274
180 4LSK 3 QC, XC 30S ribosomal protein S3 274
181 4P6F 3 QC, XC 30S ribosomal protein S3 274
182 4V67 5 AC, CC 30S ribosomal protein S3 274
183 4V5F 3 AC, CC 30S RIBOSOMAL PROTEIN S3 274
184 1VVJ 3 QC, XC 30S ribosomal protein S3 274
185 4LFZ 3 QC, XC 30S ribosomal protein S3 274
186 2E5L 4 C 30S ribosomal protein S3 274
187 5CZP 34 QC, XC 30S ribosomal protein S3 274
188 2HHH 3 C 30S ribosomal protein S3 274
189 4OX9 3 C 30S ribosomal protein S3 274
190 2UXB 3 C RIBOSOMAL PROTEIN S3 274
191 1I96 3 C 30S RIBOSOMAL PROTEIN S3 274
192 1N34 4 C 30S RIBOSOMAL PROTEIN S3 274
193 4V5A 3 AC, CC 30S RIBOSOMAL PROTEIN S3 274
194 4V63 5 AC, CC 30S ribosomal protein S3 274
195 4L71 3 QC, XC 30S ribosomal protein S3 274
196 4KVB 3 C 30S ribosomal protein S3 274
197 4V8J 3 AC, CC 30S ribosomal protein S3 274
198 1N36 3 C 30S RIBOSOMAL PROTEIN S3 274
199 2ZM6 3 C 30S ribosomal protein S3 274
200 5D8B 30 DA, ZB 30S ribosomal protein S3 274
201 4LEL 3 QC, XC 30S ribosomal protein S3 274
202 2F4V 4 C 30S ribosomal protein S3 274
203 4V5G 3 AC, CC 30S RIBOSOMAL PROTEIN S3 274
204 1I97 3 C 30S RIBOSOMAL PROTEIN S3 274
205 1I95 3 C 30S RIBOSOMAL PROTEIN S3 274
206 4V8O 3 AC 30S RIBOSOMAL PROTEIN S3 274
207 4V4Y 5 AF 30S ribosomal protein S3 274
208 4V4J 36 d 30S ribosomal protein S3 274
209 4V4X 5 AF 30S ribosomal protein S3 274
210 4V4Z 6 AF 30S ribosomal protein S3 274
211 4V4I 36 d 30S ribosomal protein S3 274
212 4V4P 38 BF 30S ribosomal protein S3 274
213 4V4R 6 AC 30S ribosomal protein S3 274
214 4V4S 6 AC 30S ribosomal protein S3 274
215 4V4T 6 AC 30S ribosomal protein S3 274
216 5LMN 3 C 30S ribosomal protein S3 274
217 5LMO 3 C 30S ribosomal protein S3 274
218 5LMP 3 C 30S ribosomal protein S3 274
219 5LMQ 3 C 30S ribosomal protein S3 274
220 5LMR 3 C 30S ribosomal protein S3 274
221 5LMS 3 C 30S ribosomal protein S3 274
222 5LMT 3 C 30S ribosomal protein S3 274
223 5LMU 3 C 30S ribosomal protein S3 274
224 5LMV 3 C 30S ribosomal protein S3 274
225 5IMQ 10 G 30S ribosomal protein S3 274
226 5IMR 3 G 30S ribosomal protein S3 274
227 4V5N 3 AC 30S RIBOSOMAL PROTEIN S3 274
228 4V5M 3 AC 30S RIBOSOMAL PROTEIN S3 274
229 1ML5 8 F 30S RIBOSOMAL PROTEIN S3 562
230 1JGO 6 F 30S RIBOSOMAL PROTEIN S3 274
231 1JGP 6 F 30S RIBOSOMAL PROTEIN S3 274
232 1JGQ 6 F 30S RIBOSOMAL PROTEIN S3 274
233 4V42 6 AF 30S RIBOSOMAL PROTEIN S3 274