Sequence Similarity Clusters for the Entities in PDB 4JI8

Entity #1 | Chains: A
16S rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 53 248 35
95 % 53 249 48
90 % 53 249 53
70 % 53 249 63
50 % 65 344 28
40 % 65 344 38
30 % 70 414 38
Entity #11 | Chains: K
RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 53 250 33
95 % 53 250 44
90 % 53 250 49
70 % 53 250 58
50 % 59 338 37
40 % 66 415 23
30 % 66 416 37
Entity #12 | Chains: L
RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 20010
95 % 53 257 35
90 % 53 257 40
70 % 59 349 23
50 % 59 350 27
40 % 59 350 37
30 % 59 350 56
Entity #13 | Chains: M
RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 53 251 31
95 % 53 251 42
90 % 53 251 47
70 % 53 251 56
50 % 59 343 34
40 % 59 343 46
30 % 64 415 44
Entity #14 | Chains: N
RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 53 249 34
95 % 53 249 49
90 % 53 249 54
70 % 53 250 61
50 % 53 250 86
40 % 53 250 106
30 % 53 250 120
Entity #15 | Chains: O
RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 53 253 28
95 % 55 258 34
90 % 55 258 39
70 % 55 258 49
50 % 64 351 26
40 % 64 352 36
30 % 64 352 55
Entity #16 | Chains: P
RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 53 245 36
95 % 53 250 46
90 % 53 250 51
70 % 53 250 60
50 % 53 250 85
40 % 53 251 105
30 % 59 341 62
Entity #17 | Chains: Q
RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 45 157 59
95 % 53 244 50
90 % 53 248 55
70 % 53 248 64
50 % 53 248 89
40 % 53 248 110
30 % 53 248 122
Entity #18 | Chains: R
RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 46 164 56
95 % 47 215 63
90 % 47 215 66
70 % 47 215 78
50 % 47 215 109
40 % 47 215 129
30 % 47 215 142
Entity #19 | Chains: S
RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 54 253 27
95 % 54 253 37
90 % 54 253 43
70 % 54 253 52
50 % 60 341 33
40 % 60 341 44
30 % 60 341 59
Entity #2 | Chains: B
RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 53 250 29
95 % 53 251 39
90 % 53 251 45
70 % 53 251 54
50 % 59 337 36
40 % 59 338 47
30 % 59 338 61
Entity #20 | Chains: T
RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 52 198 47
95 % 53 249 47
90 % 53 249 52
70 % 53 249 62
50 % 53 249 88
40 % 53 249 108
30 % 53 249 121
Entity #21 | Chains: U
RIBOSOMAL PROTEIN THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 53 240 40
95 % 53 240 56
90 % 53 240 60
70 % 53 240 69
50 % 53 240 93
40 % 53 240 116
30 % 53 240 130
Entity #3 | Chains: C
RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 214 43
95 % 47 214 64
90 % 47 214 67
70 % 47 214 79
50 % 49 265 78
40 % 49 265 99
30 % 49 265 113
Entity #4 | Chains: D
RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 53 243 37
95 % 53 251 40
90 % 53 251 46
70 % 53 251 55
50 % 59 338 35
40 % 59 339 45
30 % 59 339 60
Entity #5 | Chains: E
RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 53 250 32
95 % 53 250 43
90 % 53 250 48
70 % 53 250 57
50 % 60 342 32
40 % 60 342 43
30 % 60 344 58
Entity #6 | Chains: F
RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 54 255 25
95 % 60 261 33
90 % 60 261 37
70 % 60 261 48
50 % 60 261 84
40 % 60 261 102
30 % 66 300 79
Entity #7 | Chains: G
RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 54 254 26
95 % 54 255 36
90 % 54 255 41
70 % 54 255 50
50 % 59 300 51
40 % 59 301 64
30 % 59 301 89
Entity #8 | Chains: H
RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 54 250 30
95 % 54 250 41
90 % 54 254 42
70 % 54 254 51
50 % 62 344 30
40 % 63 346 40
30 % 69 419 35
Entity #9 | Chains: I
RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 49 159 72
95 % 53 250 45
90 % 53 250 50
70 % 53 250 59
50 % 59 338 38
40 % 59 338 48
30 % 64 410 45

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4Y4O 34 1c, 2c 30S ribosomal protein S3 274
2 4W2F 3 AC, CC 30S Ribosomal Protein S3 274
3 4Y4P 34 1c, 2c 30S ribosomal protein S3 274
4 5J4B 34 1c, 2c 30S ribosomal protein S3 274
5 4W2G 3 AC, CC 30S Ribosomal Protein S3 274
6 4LFB 3 C ribosomal protein S3 274
7 1VY4 3 AC, CC 30S ribosomal protein S3 274
8 4W2I 3 AC, CC 30S Ribosomal Protein S3 274
9 1VY5 3 AC, CC 30S ribosomal protein S3 274
10 5HCQ 34 1c, 2c 30S ribosomal protein S3 274
11 4WQF 36 BC, DC 30S ribosomal protein S3 274
12 4W2H 3 AC, CC 30S Ribosomal Protein S3 274
13 4WPO 36 BC, DC 30S ribosomal protein S3 274
14 4V8I 3 AC, CC 30S Ribosomal Protein S3 274
15 4JI1 3 C RIBOSOMAL PROTEIN S3 274
16 4Z3S 34 1c, 2c 30S ribosomal protein S3 274
17 5DOY 34 1c, 2c 30S Ribosomal Protein S3 274
18 5HD1 34 1c, 2c 30S ribosomal protein S3 274
19 4DR6 3 C 30S ribosomal protein S3 274
20 4LF7 3 C ribosomal protein S3 274
21 4LF8 3 C ribosomal protein S3 274
22 4WSD 3 22, 2E 30S ribosomal protein S3 274
23 4WQU 36 BC, DC 30S ribosomal protein S3 274
24 5E81 3 22, 2E 30S ribosomal protein S3 274
25 2VQE 3 C 30S RIBOSOMAL PROTEIN S3 274
26 4Z8C 34 1c, 2c 30S ribosomal protein S3 274
27 5HCR 34 1c, 2c 30S ribosomal protein S3 274
28 2UUB 3 C 30S RIBOSOMAL PROTEIN S3 274
29 4DV6 3 C ribosomal protein S3 274
30 4DR5 3 C 30S ribosomal protein S3 274
31 5J4C 34 1c, 2c 30S ribosomal protein S3 274
32 4DR2 3 C 30S ribosomal protein S3 274
33 4WRO 7 22, 2E 30S ribosomal protein S3 274
34 4WQ1 3 22, 2E 30S ribosomal protein S3 274
35 4LF9 3 C ribosomal protein S3 274
36 4WQY 36 BC, DC 30S ribosomal protein S3 274
37 4DUY 3 C ribosomal protein S3 274
38 4DV7 3 C ribosomal protein S3 274
39 4WRA 3 22, 2E 30S ribosomal protein S3 274
40 5HCP 34 1c, 2c 30S ribosomal protein S3 274
41 4V8D 3 AF, CF 30S RIBOSOMAL PROTEIN S3 274
42 4DR3 3 C 30S ribosomal protein S3 274
43 4V90 3 AC 30S RIBOSOMAL PROTEIN S3 274
44 4JI3 3 C RIBOSOMAL PROTEIN S3 274
45 4WQR 3 22, 2E 30S ribosomal protein S3 274
46 4JI6 3 C RIBOSOMAL PROTEIN S3 274
47 4JI8 3 C RIBOSOMAL PROTEIN S3 274
48 2UXC 3 C RIBOSOMAL PROTEIN S3 274
49 4V9R 3 AC, CC 30S Ribosomal Protein S3 274
50 4B3M 3 C 30S RIBOSOMAL PROTEIN S3 274
51 5EL6 3 22, 2E 30S ribosomal protein S3 274
52 5EL7 3 22, 2E 30S ribosomal protein S3 274
53 4LF4 3 C ribosomal protein S3 274
54 4LF6 3 C ribosomal protein S3 274
55 4JI7 3 C RIBOSOMAL PROTEIN S3 274
56 4WU1 3 22, 2E 30S ribosomal protein S3 274
57 5EL4 3 22, 2E 30S ribosomal protein S3 274
58 4B3T 3 C 30S RIBOSOMAL PROTEIN S3 274
59 4WR6 3 22, 2E 30S ribosomal protein S3 274
60 4V8B 3 AF, CF 30S RIBOSOMAL PROTEIN S3 274
61 5HAU 36 1c, 2c 30S ribosomal protein S3 274
62 2VQF 3 C 30S RIBOSOMAL PROTEIN S3 274
63 2UUA 3 C 30S RIBOSOMAL PROTEIN S3 274
64 4V87 33 BF, CF 30S RIBOSOMAL PROTEIN S3 274
65 4V95 3 AC, CC 30S Ribosomal Protein S3 274
66 1VY7 3 AC, CC 30S ribosomal protein S3 274
67 5E7K 3 22, 2E 30S ribosomal protein S3 274
68 5EL5 3 22, 2E 30S ribosomal protein S3 274
69 4B3R 3 C 30S RIBOSOMAL PROTEIN S3 274
70 4LNT 3 QC, XC 30S ribosomal protein S3 274
71 4DR1 3 C 30S ribosomal protein S3 274
72 4LFA 3 C ribosomal protein S3 274
73 4DV4 3 C ribosomal protein S3 274
74 4YZV 3 QC, XC 30S ribosomal protein S3 274
75 4JI0 3 C ribosomal protein S3 274
76 4V9S 3 AC, CC 30S Ribosomal Protein S3 274
77 4JI2 3 C RIBOSOMAL PROTEIN S3 274
78 4DR7 3 C 30S ribosomal protein S3 274
79 1J5E 3 C 30S RIBOSOMAL PROTEIN S3 274
80 4DUZ 3 C ribosomal protein S3 274
81 4V8G 3 AC, CC 30S Ribosomal Protein S3 274
82 4DV3 3 C ribosomal protein S3 274
83 4DV5 3 C ribosomal protein S3 274
84 2UUC 3 C 30S RIBOSOMAL PROTEIN S3 274
85 4LFC 3 C ribosomal protein S3 274
86 1FJG 4 C 30S RIBOSOMAL PROTEIN S3 274
87 3T1Y 3 C 30S ribosomal protein S3 274
88 4WZO 3 22, 2E 30S ribosomal protein S3 274
89 4JI4 3 C RIBOSOMAL PROTEIN S3 274
90 1VY6 3 AC, CC 30S ribosomal protein S3 274
91 1XMQ 5 C 30S Ribosomal Protein S3 274
92 4DV0 3 C ribosomal protein S3 274
93 4V9B 3 AF, CF 30S RIBOSOMAL PROTEIN S3 274
94 4V6F 33 BF, CF 30S ribosomal protein S3 274
95 4V8F 33 BF, CF 30S RIBOSOMAL PROTEIN S3 274
96 4B3S 3 C 30S RIBOSOMAL PROTEIN S3 274
97 4DV2 3 C ribosomal protein S3 274
98 4DV1 3 C ribosomal protein S3 274
99 1N32 5 C 30S RIBOSOMAL PROTEIN S3 274
100 1I94 3 C 30S RIBOSOMAL PROTEIN S3 274
101 4V8H 3 AC, CC 30S Ribosomal Protein S3 274
102 4JI5 3 C RIBOSOMAL PROTEIN S3 274
103 4W2E 36 c 30S ribosomal protein S3 274
104 4V8C 33 CF, DF 30S RIBOSOMAL PROTEIN S3 274
105 5BR8 3 C 30S ribosomal protein S3 274
106 4LF5 3 C ribosomal protein S3 274
107 5J4D 37 LA, QC 30S ribosomal protein S3 274
108 4V9A 3 AF, CF 30S RIBOSOMAL PROTEIN S3 274
109 4V5J 3 AC, CC 30S RIBOSOMAL PROTEIN S3 274
110 4V7Y 3 AC, CC 30S ribosomal protein S3 274
111 4V8E 33 BF, DF 30S RIBOSOMAL PROTEIN S3 274
112 4DR4 3 C 30S ribosomal protein S3 274
113 4WZD 3 22, 2E 30S ribosomal protein S3 274
114 3OTO 3 C 30S RIBOSOMAL PROTEIN S3 274
115 2UU9 3 C 30S RIBOSOMAL PROTEIN S3 274
116 4V8Q 37 BC 30S RIBOSOMAL PROTEIN S3 274
117 1HR0 4 C 30S RIBOSOMAL PROTEIN S3 274
118 4AQY 3 C 30S RIBOSOMAL PROTEIN S3 274
119 4W4G 3 QC, XC 30S ribosomal protein S3 274
120 4NXM 3 C ribosomal protein S3 274
121 4V5L 3 AC 30S RIBOSOMAL PROTEIN S3 274
122 4YPB 3 QC, XC 30S ribosomal protein S3 274
123 4V7X 3 AC, CC 30S ribosomal protein S3 274
124 1IBL 6 C 30S RIBOSOMAL PROTEIN S3 274
125 4V7W 3 AC, CC 30S ribosomal protein S3 274
126 4WT1 3 22, 2E 30S ribosomal protein S3 274
127 4WT8 3 AC 30S ribosomal protein S3 274
128 5DOX 34 1c, 2c 30S ribosomal protein S3 274
129 4NXN 3 C ribosomal protein S3 274
130 1XNR 5 C 16S Ribosomal protein S3 274
131 4LT8 3 QC, XC 30S ribosomal protein S3 274
132 4V51 3 AC, CC 30S RIBOSOMAL PROTEIN S3 274
133 4V7L 3 AC, CC 30S ribosomal protein S3 274
134 4V5R 3 AC, CC 30S RIBOSOMAL PROTEIN S3 274
135 1HNZ 4 C 30S RIBOSOMAL PROTEIN S3 274
136 1XNQ 5 C Ribosomal protein S3 274
137 4V8A 33 CC, DC 30S ribosomal protein S3 274
138 4V5K 3 AC, CC 30S RIBOSOMAL PROTEIN S3 274
139 4V5Q 3 AC, CC 30S RIBOSOMAL PROTEIN S3 274
140 4V7J 2 Ac, Bc 30S ribosomal protein S3 274
141 4V5C 3 AC, CC 30S RIBOSOMAL PROTEIN S3 274
142 4V5E 3 AC, CC 30S RIBOSOMAL PROTEIN S3 274
143 4L47 3 QC, XC 30S ribosomal protein S3 274
144 4V5P 3 AC, CC 30S RIBOSOMAL PROTEIN S3 274
145 4V5D 3 AC, CC 30S RIBOSOMAL PROTEIN S3 274
146 4V7Z 3 AC, CC 30S ribosomal protein S3 274
147 4V8X 3 AC, CC 30S RIBOSOMAL PROTEIN S3 274
148 4V5S 3 AC, CC 30S RIBOSOMAL PROTEIN S3 274
149 1XMO 5 C 30S ribosomal protein S3 274
150 3T1H 3 C 30S ribosomal protein S3 274
151 2UXD 3 C RIBOSOMAL PROTEIN S3 274
152 1N33 5 C 30S RIBOSOMAL PROTEIN S3 274
153 1IBK 4 C 30S RIBOSOMAL PROTEIN S3 274
154 4V6G 3 AF, CF 30S RIBOSOMAL PROTEIN S3 274
155 4V8N 3 AC, CC 30S RIBOSOMAL PROTEIN S3 274
156 4V97 3 AC, CC 30S ribosomal protein S3 274
157 1HNW 4 C 30S RIBOSOMAL PROTEIN S3 274
158 4V7M 3 AC, CC 30S ribosomal protein S3 274
159 4WSM 3 22, 2E 30S ribosomal protein S3 274
160 4TUD 3 QC, XC 30S ribosomal protein S3 274
161 1IBM 6 C 30S RIBOSOMAL PROTEIN S3 274
162 4V6A 3 AC, CC 30S ribosomal protein S3 274
163 4TUE 3 QC, XC 30S ribosomal protein S3 274
164 4TUA 3 QC, XC 30S ribosomal protein S3 274
165 4V7K 2 Ac, Bc 30S ribosomal protein S3 274
166 1HNX 4 C 30S RIBOSOMAL PROTEIN S3 274
167 4TUC 3 QC, XC 30S ribosomal protein S3 274
168 4TUB 3 QC, XC 30S ribosomal protein S3 274
169 4P70 3 QC, XC 30S ribosomal protein S3 274
170 4V8U 3 AC, CC 30S RIBOSOMAL PROTEIN S3 274
171 4LSK 3 QC, XC 30S ribosomal protein S3 274
172 4P6F 3 QC, XC 30S ribosomal protein S3 274
173 4V67 5 AC, CC 30S ribosomal protein S3 274
174 4V5F 3 AC, CC 30S RIBOSOMAL PROTEIN S3 274
175 1VVJ 3 QC, XC 30S ribosomal protein S3 274
176 4LFZ 3 QC, XC 30S ribosomal protein S3 274
177 2E5L 4 C 30S ribosomal protein S3 274
178 2HHH 3 C 30S ribosomal protein S3 274
179 4OX9 3 C 30S ribosomal protein S3 274
180 2UXB 3 C RIBOSOMAL PROTEIN S3 274
181 1I96 3 C 30S RIBOSOMAL PROTEIN S3 274
182 1N34 4 C 30S RIBOSOMAL PROTEIN S3 274
183 4V5A 3 AC, CC 30S RIBOSOMAL PROTEIN S3 274
184 4V63 5 AC, CC 30S ribosomal protein S3 274
185 4L71 3 QC, XC 30S ribosomal protein S3 274
186 4KVB 3 C 30S ribosomal protein S3 274
187 4V8J 3 AC, CC 30S ribosomal protein S3 274
188 1N36 3 C 30S RIBOSOMAL PROTEIN S3 274
189 2ZM6 3 C 30S ribosomal protein S3 274
190 5D8B 30 DA, ZB 30S ribosomal protein S3 274
191 4LEL 3 QC, XC 30S ribosomal protein S3 274
192 2F4V 4 C 30S ribosomal protein S3 274
193 4V5G 3 AC, CC 30S RIBOSOMAL PROTEIN S3 274
194 1I97 3 C 30S RIBOSOMAL PROTEIN S3 274
195 1I95 3 C 30S RIBOSOMAL PROTEIN S3 274
196 4V8O 3 AC 30S RIBOSOMAL PROTEIN S3 274
197 4V4Y 5 AF 30S ribosomal protein S3 274
198 4V4J 36 d 30S ribosomal protein S3 274
199 4V4X 5 AF 30S ribosomal protein S3 274
200 4V4Z 6 AF 30S ribosomal protein S3 274
201 4V4I 36 d 30S ribosomal protein S3 274
202 4V4P 38 BF 30S ribosomal protein S3 274
203 4V4R 6 AC 30S ribosomal protein S3 274
204 4V4S 6 AC 30S ribosomal protein S3 274
205 4V4T 6 AC 30S ribosomal protein S3 274
206 5IMQ 10 G 30S ribosomal protein S3 274
207 5IMR 3 G 30S ribosomal protein S3 274
208 4V5N 3 AC 30S RIBOSOMAL PROTEIN S3 274
209 4V5M 3 AC 30S RIBOSOMAL PROTEIN S3 274
210 1ML5 8 F 30S RIBOSOMAL PROTEIN S3 562
211 1JGO 6 F 30S RIBOSOMAL PROTEIN S3 274
212 1JGP 6 F 30S RIBOSOMAL PROTEIN S3 274
213 1JGQ 6 F 30S RIBOSOMAL PROTEIN S3 274
214 4V42 6 AF 30S RIBOSOMAL PROTEIN S3 274