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Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Sequence Clustering and Redundancy Reduction Results
4JI8
Cluster # 76 Members. Sequence cutoff: 50% Cluster size: 214 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4Y4O 34 1c, 2c 30S ribosomal protein S3 300852  
2 4W2F 3 AC, CC 30S Ribosomal Protein S3 300852  
3 4Y4P 34 1c, 2c 30S ribosomal protein S3 300852  
4 4W2G 3 AC, CC 30S Ribosomal Protein S3 300852  
5 4LFB 3 C ribosomal protein S3 300852  
6 1VY4 3 AC, CC 30S ribosomal protein S3 300852  
7 4W2I 3 AC, CC 30S Ribosomal Protein S3 300852  
8 1VY5 3 AC, CC 30S ribosomal protein S3 300852  
9 4WQF 36 BC, DC 30S ribosomal protein S3 300852  
10 4W2H 3 AC, CC 30S Ribosomal Protein S3 300852  
11 4WPO 36 BC, DC 30S ribosomal protein S3 300852  
12 4V8I 3 AC, CC 30S Ribosomal Protein S3 274  
13 4JI1 3 C RIBOSOMAL PROTEIN S3 300852  
14 4DR6 3 C 30S ribosomal protein S3 300852  
15 4LF7 3 C ribosomal protein S3 300852  
16 4LF8 3 C ribosomal protein S3 300852  
17 4WQU 36 BC, DC 30S ribosomal protein S3 300852  
18 2VQE 3 C 30S RIBOSOMAL PROTEIN S3 300852  
19 2UUB 3 C 30S RIBOSOMAL PROTEIN S3 300852  
20 4DV6 3 C ribosomal protein S3 300852  
21 4DR5 3 C 30S ribosomal protein S3 300852  
22 4DR2 3 C 30S ribosomal protein S3 300852  
23 4LF9 3 C ribosomal protein S3 300852  
24 4WQY 36 BC, DC 30S ribosomal protein S3 300852  
25 4DUY 3 C ribosomal protein S3 300852  
26 4DV7 3 C ribosomal protein S3 300852  
27 4V9P 35 BC, DC, FC, HC 30S ribosomal protein S3 83333  
28 4V8D 3 AF, CF 30S RIBOSOMAL PROTEIN S3 300852  
29 4DR3 3 C 30S ribosomal protein S3 300852  
30 4V90 3 AC 30S RIBOSOMAL PROTEIN S3 300852  
31 4JI3 3 C RIBOSOMAL PROTEIN S3 300852  
32 4JI6 3 C RIBOSOMAL PROTEIN S3 300852  
33 4JI8 3 C RIBOSOMAL PROTEIN S3 300852  
34 2UXC 3 C RIBOSOMAL PROTEIN S3 300852  
35 4V9R 3 AC, CC 30S Ribosomal Protein S3 274  
36 4B3M 3 C 30S RIBOSOMAL PROTEIN S3 300852  
37 4LF4 3 C ribosomal protein S3 300852  
38 4LF6 3 C ribosomal protein S3 300852  
39 4JI7 3 C RIBOSOMAL PROTEIN S3 300852  
40 4B3T 3 C 30S RIBOSOMAL PROTEIN S3 300852  
41 4V8B 3 AF, CF 30S RIBOSOMAL PROTEIN S3 300852  
42 4V9O 36 BC, DC, FC, HC 30S ribosomal protein S3 83333  
43 2VQF 3 C 30S RIBOSOMAL PROTEIN S3 300852  
44 2UUA 3 C 30S RIBOSOMAL PROTEIN S3 300852  
45 4V87 33 BF, CF 30S RIBOSOMAL PROTEIN S3 300852  
46 4V95 3 AC, CC 30S Ribosomal Protein S3 274  
47 1VY7 3 AC, CC 30S ribosomal protein S3 300852  
48 4B3R 3 C 30S RIBOSOMAL PROTEIN S3 300852  
49 4LNT 3 QC, XC 30S ribosomal protein S3 300852  
50 4DR1 3 C 30S ribosomal protein S3 300852  
51 4LFA 3 C ribosomal protein S3 300852  
52 4DV4 3 C ribosomal protein S3 300852  
53 4JI0 3 C ribosomal protein S3 300852  
54 4V9S 3 AC, CC 30S Ribosomal Protein S3 274  
55 4JI2 3 C RIBOSOMAL PROTEIN S3 300852  
56 4V6C 2 AC, CC 30S ribosomal protein S3 83333  
57 4DR7 3 C 30S ribosomal protein S3 300852  
58 1J5E 3 C 30S RIBOSOMAL PROTEIN S3 274  
59 4DUZ 3 C ribosomal protein S3 300852  
60 4V8G 3 AC, CC 30S Ribosomal Protein S3 300852  
61 4DV3 3 C ribosomal protein S3 300852  
62 4DV5 3 C ribosomal protein S3 300852  
63 2UUC 3 C 30S RIBOSOMAL PROTEIN S3 300852  
64 4LFC 3 C ribosomal protein S3 300852  
65 1FJG 4 C 30S RIBOSOMAL PROTEIN S3 274  
66 3T1Y 3 C 30S ribosomal protein S3 300852  
67 4JI4 3 C RIBOSOMAL PROTEIN S3 300852  
68 1VY6 3 AC, CC 30S ribosomal protein S3 300852  
69 1XMQ 5 C 30S Ribosomal Protein S3 274  
70 4DV0 3 C ribosomal protein S3 300852  
71 4V9B 3 AF, CF 30S RIBOSOMAL PROTEIN S3 300852  
72 4V6F 33 BF, CF 30S ribosomal protein S3 300852  
73 4V8F 33 BF, CF 30S RIBOSOMAL PROTEIN S3 300852  
74 4B3S 3 C 30S RIBOSOMAL PROTEIN S3 300852  
75 4DV2 3 C ribosomal protein S3 300852  
76 4DV1 3 C ribosomal protein S3 300852  
77 1N32 5 C 30S RIBOSOMAL PROTEIN S3 274  
78 1I94 3 C 30S RIBOSOMAL PROTEIN S3 274  
79 4V8H 3 AC, CC 30S Ribosomal Protein S3 300852  
80 4JI5 3 C RIBOSOMAL PROTEIN S3 300852  
81 4W2E 36 c 30S ribosomal protein S3 300852  
82 4V8C 33 CF, DF 30S RIBOSOMAL PROTEIN S3 300852  
83 4LF5 3 C ribosomal protein S3 300852  
84 4V9A 3 AF, CF 30S RIBOSOMAL PROTEIN S3 300852  
85 4V5J 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
86 4V7Y 3 AC, CC 30S ribosomal protein S3 300852  
87 4V9C 3 AC, CC 30S ribosomal protein S3 83333  
88 4V8E 33 BF, DF 30S RIBOSOMAL PROTEIN S3 300852  
89 4DR4 3 C 30S ribosomal protein S3 300852  
90 3OTO 3 C 30S RIBOSOMAL PROTEIN S3 300852  
91 2UU9 3 C 30S RIBOSOMAL PROTEIN S3 300852  
92 4V8Q 37 BC 30S RIBOSOMAL PROTEIN S3 300852  
93 4V85 3 AC 30S ribosomal protein S3 562  
94 1HR0 4 C 30S RIBOSOMAL PROTEIN S3 274  
95 4AQY 3 C 30S RIBOSOMAL PROTEIN S3 274  
96 4NXM 3 C ribosomal protein S3 300852  
97 4V5L 3 AC 30S RIBOSOMAL PROTEIN S3 300852  
98 4V7X 3 AC, CC 30S ribosomal protein S3 300852  
99 1IBL 6 C 30S RIBOSOMAL PROTEIN S3 274  
100 4V7W 3 AC, CC 30S ribosomal protein S3 300852  
101 4WT8 3 C 30S ribosomal protein S3 300852  
102 4NXN 3 C ribosomal protein S3 300852  
103 1XNR 5 C 16S Ribosomal protein S3 274  
104 4LT8 3 QC, XC 30S ribosomal protein S3 300852  
105 4V51 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
106 4V7L 3 AC, CC 30S ribosomal protein S3 300852  
107 4V5R 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
108 1HNZ 4 C 30S RIBOSOMAL PROTEIN S3 274  
109 1XNQ 5 C Ribosomal protein S3 274  
110 4V8A 33 CC, DC 30S ribosomal protein S3 300852  
111 4V5K 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
112 4V5Q 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
113 4V7J 2 Ac, Bc 30S ribosomal protein S3 300852  
114 4V5C 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
115 4V5E 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
116 4L47 3 QC, XC 30S ribosomal protein S3 300852  
117 4V5P 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
118 4V5D 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
119 4V7Z 3 AC, CC 30S ribosomal protein S3 300852  
120 4V8X 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
121 4V5S 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
122 1XMO 5 C 30S ribosomal protein S3 274  
123 3T1H 3 C 30S ribosomal protein S3 300852  
124 2UXD 3 C RIBOSOMAL PROTEIN S3 300852  
125 1N33 5 C 30S RIBOSOMAL PROTEIN S3 274  
126 1IBK 4 C 30S RIBOSOMAL PROTEIN S3 274  
127 4V6G 3 AF, CF 30S RIBOSOMAL PROTEIN S3 300852  
128 4V8N 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
129 4V97 3 AC, CC 30S ribosomal protein S3 300852  
130 1HNW 4 C 30S RIBOSOMAL PROTEIN S3 274  
131 4V7M 3 AC, CC 30S ribosomal protein S3 300852  
132 1IBM 6 C 30S RIBOSOMAL PROTEIN S3 274  
133 4V6A 3 AC, CC 30S ribosomal protein S3 300852  
134 4V7K 2 Ac, Bc 30S ribosomal protein S3 300852  
135 1HNX 4 C 30S RIBOSOMAL PROTEIN S3 274  
136 4P70 3 QC, XC 30S ribosomal protein S3 300852  
137 4V8U 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
138 4LSK 3 QC, XC 30S ribosomal protein S3 300852  
139 4V6D 2 AC, CC 30S ribosomal protein S3 83333  
140 4P6F 3 QC, XC 30S ribosomal protein S3 300852  
141 4V67 5 AC, CC 30S ribosomal protein S3 274  
142 4V5F 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
143 1VVJ 3 QC, XC 30S ribosomal protein S3 300852  
144 4LFZ 3 QC, XC 30S ribosomal protein S3 300852  
145 2E5L 4 C 30S ribosomal protein S3 274  
146 4V6E 2 AC, CC 30S ribosomal protein S3 83333  
147 4V52 2 AC, CC 30S ribosomal protein S3 562  
148 2HHH 3 C 30S ribosomal protein S3 300852  
149 4V89 3 AC 30S ribosomal protein S3 562  
150 4OX9 3 C 30S ribosomal protein S3 300852  
151 4V54 2 AC, CC 30S ribosomal protein S3 562  
152 2UXB 3 C RIBOSOMAL PROTEIN S3 300852  
153 1I96 3 C 30S RIBOSOMAL PROTEIN S3 274  
154 4V50 5 AC, CC 30S ribosomal protein S3 562  
155 1N34 4 C 30S RIBOSOMAL PROTEIN S3 274  
156 4V57 2 AC, CC 30S ribosomal protein S3 562  
157 4V5A 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
158 4V63 5 AC, CC 30S ribosomal protein S3 262724  
159 4L71 3 QC, XC 30S ribosomal protein S3 300852  
160 4KVB 3 C 30S ribosomal protein S3 262724  
161 4V64 2 AC, CC 30S ribosomal protein S3 562  
162 4V8J 3 AC, CC 30S ribosomal protein S3 300852  
163 1N36 3 C 30S RIBOSOMAL PROTEIN S3 274  
164 2ZM6 3 C 30S ribosomal protein S3 274  
165 4V4H 2 AC, CC 30S RIBOSOMAL PROTEIN S3 562  
166 4V4Q 2 AC, CC 30S ribosomal protein S3 562  
167 4V5B 35 BC, DC 30S RIBOSOMAL PROTEIN S3 RESIDUES 2-233 562  
168 4LEL 3 QC, XC 30S ribosomal protein S3 300852  
169 4V53 2 AC, CC 30S ribosomal protein S3 562  
170 2F4V 4 C 30S ribosomal protein S3 274  
171 4V5G 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
172 4V56 2 AC, CC 30S ribosomal protein S3 562  
173 1I97 3 C 30S RIBOSOMAL PROTEIN S3 274  
174 4V55 2 AC, CC 30S ribosomal protein S3 562  
175 1I95 3 C 30S RIBOSOMAL PROTEIN S3 274  
176 4V8O 3 AC 30S RIBOSOMAL PROTEIN S3 300852  
177 4V5Y 2 AC, CC 30S ribosomal protein S3 562  
178 4V4Y 5 AF 30S ribosomal protein S3 300852  
179 4V4J 36 d 30S ribosomal protein S3 262724  
180 4V4X 5 AF 30S ribosomal protein S3 300852  
181 4V4Z 6 AF 30S ribosomal protein S3 300852  
182 4V4I 36 d 30S ribosomal protein S3 262724  
183 4V4P 38 BF 30S ribosomal protein S3 300852  
184 4V4R 6 AC 30S ribosomal protein S3 300852  
185 4V4S 6 AC 30S ribosomal protein S3 300852  
186 4V4T 6 AC 30S ribosomal protein S3 300852  
187 3J9Y 18 c 30S ribosomal protein S3 562  
188 5AFI 3 c 30S ribosomal protein S3 562  
189 4V7D 37 BC 30S ribosomal protein S3 562  
190 4V7C 3 AC 30S ribosomal protein S3 562  
191 4V7B 3 AC 30S ribosomal protein S3 83333  
192 4V6V 14 AC 30S ribosomal protein S3 562  
193 4ADV 3 C 30S RIBOSOMAL PROTEIN S3 562  
194 4V6S 39 BE 30S ribosomal protein S3 562  
195 4V6P 6 AF 30S ribosomal protein S3 562  
196 4V6Q 6 AF 30S ribosomal protein S3 562  
197 4V6R 6 AF 30S ribosomal protein S3 562  
198 4V6N 40 BF 30S ribosomal protein S3 562  
199 4V6O 6 AF 30S ribosomal protein S3 562  
200 4V6M 7 AC 30S ribosomal protein S3 83333  
201 4V6K 39 BG 30S ribosomal protein S3 83333  
202 4V6L 6 AG 30S ribosomal protein S3 83333  
203 4V5N 3 AC 30S RIBOSOMAL PROTEIN S3 300852  
204 4V5M 3 AC 30S RIBOSOMAL PROTEIN S3 300852  
205 4V7I 38 BC 30S ribosomal protein S3 83333  
206 4V65 15 AO 30S ribosomal protein S3 562  
207 4V66 15 AO 30S ribosomal protein S3 562  
208 4V47 29 BC 30S RIBOSOMAL PROTEIN S3 562  
209 4V48 31 BC 30S RIBOSOMAL PROTEIN S3 562  
210 1ML5 8 F 30S RIBOSOMAL PROTEIN S3 562  
211 1JGO 6 F 30S RIBOSOMAL PROTEIN S3 274  
212 1JGP 6 F 30S RIBOSOMAL PROTEIN S3 274  
213 1JGQ 6 F 30S RIBOSOMAL PROTEIN S3 274  
214 4V42 6 AF 30S RIBOSOMAL PROTEIN S3 274  
 
Sequence Clusters for the Sequence Entities in PDB 4JI8
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 197 29
95% 35 198 45
90% 35 198 47
70% 35 198 59
50% 46 282 35
40% 46 282 45
30% 51 333 46
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 199 25
95% 35 199 40
90% 35 199 42
70% 35 199 54
50% 40 276 42
40% 47 333 35
30% 47 333 45
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 17980
95% 35 206 31
90% 35 206 33
70% 40 288 24
50% 40 288 34
40% 40 288 44
30% 40 288 69
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 200 22
95% 35 200 38
90% 35 200 40
70% 35 200 51
50% 40 281 39
40% 40 281 50
30% 45 334 49
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 198 26
95% 35 198 46
90% 35 198 48
70% 35 198 60
50% 35 198 92
40% 35 198 114
30% 35 198 138
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 202 20
95% 37 207 30
90% 37 207 32
70% 37 207 43
50% 45 289 33
40% 45 289 43
30% 45 289 67
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 194 30
95% 35 199 42
90% 35 199 44
70% 35 199 56
50% 35 199 89
40% 35 199 112
30% 40 279 76
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 113 66
95% 35 193 50
90% 35 197 49
70% 35 197 61
50% 35 197 93
40% 35 197 116
30% 35 197 139
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 125 59
95% 32 174 71
90% 32 174 75
70% 32 174 89
50% 32 174 130
40% 32 174 148
30% 32 174 164
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 202 19
95% 36 202 33
90% 36 202 36
70% 36 202 47
50% 41 279 38
40% 41 279 49
30% 41 279 73
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 199 23
95% 35 200 35
90% 35 200 38
70% 35 200 48
50% 35 200 88
40% 40 276 53
30% 40 276 75
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 149 54
95% 35 198 44
90% 35 198 46
70% 35 198 58
50% 35 198 91
40% 35 198 113
30% 35 198 137
Entity #21: Chains: U - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 189 32
95% 35 189 52
90% 35 189 55
70% 35 189 67
50% 35 189 112
40% 35 189 135
30% 35 189 153
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 173 48
95% 32 173 72
90% 32 173 76
70% 32 173 91
50% 33 214 76
40% 33 214 102
30% 33 214 122
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 192 31
95% 35 200 36
90% 35 200 39
70% 35 200 49
50% 40 276 40
40% 40 277 51
30% 40 277 74
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 199 24
95% 35 199 39
90% 35 199 41
70% 35 199 52
50% 41 280 37
40% 41 280 48
30% 41 282 72
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 204 17
95% 42 210 29
90% 42 210 31
70% 42 210 42
50% 42 210 82
40% 42 210 107
30% 48 248 87
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 203 18
95% 36 204 32
90% 36 204 34
70% 36 204 44
50% 41 246 54
40% 41 247 71
30% 41 247 94
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 199 21
95% 36 199 37
90% 36 203 35
70% 36 203 45
50% 43 282 36
40% 44 284 46
30% 50 338 44
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 109 86
95% 35 199 41
90% 35 199 43
70% 35 199 55
50% 40 276 41
40% 40 276 54
30% 45 329 50
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.