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Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Sequence Clustering and Redundancy Reduction Results
4JI8
Cluster # 101 Members. Sequence cutoff: 40% Cluster size: 220 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4Y4O 34 1c, 2c 30S ribosomal protein S3 300852  
2 4W2F 3 AC, CC 30S Ribosomal Protein S3 300852  
3 4Y4P 34 1c, 2c 30S ribosomal protein S3 300852  
4 4W2G 3 AC, CC 30S Ribosomal Protein S3 300852  
5 4LFB 3 C ribosomal protein S3 300852  
6 1VY4 3 AC, CC 30S ribosomal protein S3 300852  
7 4W2I 3 AC, CC 30S Ribosomal Protein S3 300852  
8 1VY5 3 AC, CC 30S ribosomal protein S3 300852  
9 4WQF 36 BC, DC 30S ribosomal protein S3 300852  
10 4W2H 3 AC, CC 30S Ribosomal Protein S3 300852  
11 4WPO 36 BC, DC 30S ribosomal protein S3 300852  
12 4V8I 3 AC, CC 30S Ribosomal Protein S3 274  
13 4JI1 3 C RIBOSOMAL PROTEIN S3 300852  
14 4DR6 3 C 30S ribosomal protein S3 300852  
15 4LF7 3 C ribosomal protein S3 300852  
16 4LF8 3 C ribosomal protein S3 300852  
17 4WQU 36 BC, DC 30S ribosomal protein S3 300852  
18 2VQE 3 C 30S RIBOSOMAL PROTEIN S3 300852  
19 4Z8C 34 1c, 2c 30S ribosomal protein S3 300852  
20 2UUB 3 C 30S RIBOSOMAL PROTEIN S3 300852  
21 4DV6 3 C ribosomal protein S3 300852  
22 4DR5 3 C 30S ribosomal protein S3 300852  
23 4DR2 3 C 30S ribosomal protein S3 300852  
24 4LF9 3 C ribosomal protein S3 300852  
25 4WQY 36 BC, DC 30S ribosomal protein S3 300852  
26 4DUY 3 C ribosomal protein S3 300852  
27 4DV7 3 C ribosomal protein S3 300852  
28 4V9P 35 BC, DC, FC, HC 30S ribosomal protein S3 83333  
29 4V8D 3 AF, CF 30S RIBOSOMAL PROTEIN S3 300852  
30 4DR3 3 C 30S ribosomal protein S3 300852  
31 4V90 3 AC 30S RIBOSOMAL PROTEIN S3 300852  
32 4JI3 3 C RIBOSOMAL PROTEIN S3 300852  
33 4JI6 3 C RIBOSOMAL PROTEIN S3 300852  
34 4JI8 3 C RIBOSOMAL PROTEIN S3 300852  
35 2UXC 3 C RIBOSOMAL PROTEIN S3 300852  
36 4V9R 3 AC, CC 30S Ribosomal Protein S3 274  
37 4B3M 3 C 30S RIBOSOMAL PROTEIN S3 300852  
38 4LF4 3 C ribosomal protein S3 300852  
39 4LF6 3 C ribosomal protein S3 300852  
40 4JI7 3 C RIBOSOMAL PROTEIN S3 300852  
41 4B3T 3 C 30S RIBOSOMAL PROTEIN S3 300852  
42 4V8B 3 AF, CF 30S RIBOSOMAL PROTEIN S3 300852  
43 4V9O 36 BC, DC, FC, HC 30S ribosomal protein S3 83333  
44 2VQF 3 C 30S RIBOSOMAL PROTEIN S3 300852  
45 2UUA 3 C 30S RIBOSOMAL PROTEIN S3 300852  
46 4V87 33 BF, CF 30S RIBOSOMAL PROTEIN S3 300852  
47 4V95 3 AC, CC 30S Ribosomal Protein S3 274  
48 1VY7 3 AC, CC 30S ribosomal protein S3 300852  
49 4B3R 3 C 30S RIBOSOMAL PROTEIN S3 300852  
50 4LNT 3 QC, XC 30S ribosomal protein S3 300852  
51 4DR1 3 C 30S ribosomal protein S3 300852  
52 4LFA 3 C ribosomal protein S3 300852  
53 4DV4 3 C ribosomal protein S3 300852  
54 4JI0 3 C ribosomal protein S3 300852  
55 4V9S 3 AC, CC 30S Ribosomal Protein S3 274  
56 4JI2 3 C RIBOSOMAL PROTEIN S3 300852  
57 4V6C 2 AC, CC 30S ribosomal protein S3 83333  
58 4DR7 3 C 30S ribosomal protein S3 300852  
59 1J5E 3 C 30S RIBOSOMAL PROTEIN S3 274  
60 4DUZ 3 C ribosomal protein S3 300852  
61 4V8G 3 AC, CC 30S Ribosomal Protein S3 300852  
62 4DV3 3 C ribosomal protein S3 300852  
63 4DV5 3 C ribosomal protein S3 300852  
64 2UUC 3 C 30S RIBOSOMAL PROTEIN S3 300852  
65 4LFC 3 C ribosomal protein S3 300852  
66 1FJG 4 C 30S RIBOSOMAL PROTEIN S3 274  
67 3T1Y 3 C 30S ribosomal protein S3 300852  
68 4JI4 3 C RIBOSOMAL PROTEIN S3 300852  
69 1VY6 3 AC, CC 30S ribosomal protein S3 300852  
70 1XMQ 5 C 30S Ribosomal Protein S3 274  
71 4DV0 3 C ribosomal protein S3 300852  
72 4V9B 3 AF, CF 30S RIBOSOMAL PROTEIN S3 300852  
73 4V6F 33 BF, CF 30S ribosomal protein S3 300852  
74 4V8F 33 BF, CF 30S RIBOSOMAL PROTEIN S3 300852  
75 4B3S 3 C 30S RIBOSOMAL PROTEIN S3 300852  
76 4DV2 3 C ribosomal protein S3 300852  
77 4DV1 3 C ribosomal protein S3 300852  
78 1N32 5 C 30S RIBOSOMAL PROTEIN S3 274  
79 1I94 3 C 30S RIBOSOMAL PROTEIN S3 274  
80 4V8H 3 AC, CC 30S Ribosomal Protein S3 300852  
81 4JI5 3 C RIBOSOMAL PROTEIN S3 300852  
82 4W2E 36 c 30S ribosomal protein S3 300852  
83 4V8C 33 CF, DF 30S RIBOSOMAL PROTEIN S3 300852  
84 4LF5 3 C ribosomal protein S3 300852  
85 4V9A 3 AF, CF 30S RIBOSOMAL PROTEIN S3 300852  
86 4V5J 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
87 4V7Y 3 AC, CC 30S ribosomal protein S3 300852  
88 4V9C 3 AC, CC 30S ribosomal protein S3 83333  
89 4V8E 33 BF, DF 30S RIBOSOMAL PROTEIN S3 300852  
90 4DR4 3 C 30S ribosomal protein S3 300852  
91 3OTO 3 C 30S RIBOSOMAL PROTEIN S3 300852  
92 2UU9 3 C 30S RIBOSOMAL PROTEIN S3 300852  
93 4V8Q 37 BC 30S RIBOSOMAL PROTEIN S3 300852  
94 4V85 3 AC 30S ribosomal protein S3 562  
95 1HR0 4 C 30S RIBOSOMAL PROTEIN S3 274  
96 4AQY 3 C 30S RIBOSOMAL PROTEIN S3 274  
97 4NXM 3 C ribosomal protein S3 300852  
98 4V5L 3 AC 30S RIBOSOMAL PROTEIN S3 300852  
99 4V7X 3 AC, CC 30S ribosomal protein S3 300852  
100 1IBL 6 C 30S RIBOSOMAL PROTEIN S3 274  
101 4V7W 3 AC, CC 30S ribosomal protein S3 300852  
102 4WT8 3 C 30S ribosomal protein S3 300852  
103 4NXN 3 C ribosomal protein S3 300852  
104 1XNR 5 C 16S Ribosomal protein S3 274  
105 4LT8 3 QC, XC 30S ribosomal protein S3 300852  
106 4V51 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
107 4V7L 3 AC, CC 30S ribosomal protein S3 300852  
108 4V5R 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
109 1HNZ 4 C 30S RIBOSOMAL PROTEIN S3 274  
110 1XNQ 5 C Ribosomal protein S3 274  
111 4V8A 33 CC, DC 30S ribosomal protein S3 300852  
112 4V5K 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
113 4V5Q 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
114 4V7J 2 Ac, Bc 30S ribosomal protein S3 300852  
115 4V5C 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
116 4V5E 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
117 4L47 3 QC, XC 30S ribosomal protein S3 300852  
118 4V5P 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
119 4V5D 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
120 4V7Z 3 AC, CC 30S ribosomal protein S3 300852  
121 4V8X 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
122 4V5S 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
123 1XMO 5 C 30S ribosomal protein S3 274  
124 3T1H 3 C 30S ribosomal protein S3 300852  
125 2UXD 3 C RIBOSOMAL PROTEIN S3 300852  
126 1N33 5 C 30S RIBOSOMAL PROTEIN S3 274  
127 1IBK 4 C 30S RIBOSOMAL PROTEIN S3 274  
128 4V6G 3 AF, CF 30S RIBOSOMAL PROTEIN S3 300852  
129 4V8N 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
130 4V97 3 AC, CC 30S ribosomal protein S3 300852  
131 1HNW 4 C 30S RIBOSOMAL PROTEIN S3 274  
132 4V7M 3 AC, CC 30S ribosomal protein S3 300852  
133 4TUD 3 QC, XC 30S ribosomal protein S3 300852  
134 1IBM 6 C 30S RIBOSOMAL PROTEIN S3 274  
135 4V6A 3 AC, CC 30S ribosomal protein S3 300852  
136 4TUE 3 QC, XC 30S ribosomal protein S3 300852  
137 4TUA 3 QC, XC 30S ribosomal protein S3 300852  
138 4V7K 2 Ac, Bc 30S ribosomal protein S3 300852  
139 1HNX 4 C 30S RIBOSOMAL PROTEIN S3 274  
140 4TUC 3 QC, XC 30S ribosomal protein S3 300852  
141 4TUB 3 QC, XC 30S ribosomal protein S3 300852  
142 4P70 3 QC, XC 30S ribosomal protein S3 300852  
143 4V8U 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
144 4LSK 3 QC, XC 30S ribosomal protein S3 300852  
145 4V6D 2 AC, CC 30S ribosomal protein S3 83333  
146 4P6F 3 QC, XC 30S ribosomal protein S3 300852  
147 4V67 5 AC, CC 30S ribosomal protein S3 274  
148 4V5F 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
149 1VVJ 3 QC, XC 30S ribosomal protein S3 300852  
150 4LFZ 3 QC, XC 30S ribosomal protein S3 300852  
151 2E5L 4 C 30S ribosomal protein S3 274  
152 4V6E 2 AC, CC 30S ribosomal protein S3 83333  
153 4V52 2 AC, CC 30S ribosomal protein S3 562  
154 2HHH 3 C 30S ribosomal protein S3 300852  
155 4V89 3 AC 30S ribosomal protein S3 562  
156 4OX9 3 C 30S ribosomal protein S3 300852  
157 4V54 2 AC, CC 30S ribosomal protein S3 562  
158 2UXB 3 C RIBOSOMAL PROTEIN S3 300852  
159 1I96 3 C 30S RIBOSOMAL PROTEIN S3 274  
160 4V50 5 AC, CC 30S ribosomal protein S3 562  
161 1N34 4 C 30S RIBOSOMAL PROTEIN S3 274  
162 4V57 2 AC, CC 30S ribosomal protein S3 562  
163 4V5A 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
164 4V63 5 AC, CC 30S ribosomal protein S3 262724  
165 4L71 3 QC, XC 30S ribosomal protein S3 300852  
166 4KVB 3 C 30S ribosomal protein S3 262724  
167 4V64 2 AC, CC 30S ribosomal protein S3 562  
168 4V8J 3 AC, CC 30S ribosomal protein S3 300852  
169 1N36 3 C 30S RIBOSOMAL PROTEIN S3 274  
170 2ZM6 3 C 30S ribosomal protein S3 274  
171 4V4H 2 AC, CC 30S RIBOSOMAL PROTEIN S3 562  
172 4V4Q 2 AC, CC 30S ribosomal protein S3 562  
173 4V5B 35 BC, DC 30S RIBOSOMAL PROTEIN S3 RESIDUES 2-233 562  
174 4LEL 3 QC, XC 30S ribosomal protein S3 300852  
175 4V53 2 AC, CC 30S ribosomal protein S3 562  
176 2F4V 4 C 30S ribosomal protein S3 274  
177 4V5G 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
178 4V56 2 AC, CC 30S ribosomal protein S3 562  
179 1I97 3 C 30S RIBOSOMAL PROTEIN S3 274  
180 4V55 2 AC, CC 30S ribosomal protein S3 562  
181 1I95 3 C 30S RIBOSOMAL PROTEIN S3 274  
182 4V8O 3 AC 30S RIBOSOMAL PROTEIN S3 300852  
183 4V5Y 2 AC, CC 30S ribosomal protein S3 562  
184 4V4Y 5 AF 30S ribosomal protein S3 300852  
185 4V4J 36 d 30S ribosomal protein S3 262724  
186 4V4X 5 AF 30S ribosomal protein S3 300852  
187 4V4Z 6 AF 30S ribosomal protein S3 300852  
188 4V4I 36 d 30S ribosomal protein S3 262724  
189 4V4P 38 BF 30S ribosomal protein S3 300852  
190 4V4R 6 AC 30S ribosomal protein S3 300852  
191 4V4S 6 AC 30S ribosomal protein S3 300852  
192 4V4T 6 AC 30S ribosomal protein S3 300852  
193 3J9Y 18 c 30S ribosomal protein S3 562  
194 5AFI 3 c 30S ribosomal protein S3 562  
195 4V7D 37 BC 30S ribosomal protein S3 562  
196 4V7C 3 AC 30S ribosomal protein S3 562  
197 4V7B 3 AC 30S ribosomal protein S3 83333  
198 4V6V 14 AC 30S ribosomal protein S3 562  
199 4ADV 3 C 30S RIBOSOMAL PROTEIN S3 562  
200 4V6S 39 BE 30S ribosomal protein S3 562  
201 4V6P 6 AF 30S ribosomal protein S3 562  
202 4V6Q 6 AF 30S ribosomal protein S3 562  
203 4V6R 6 AF 30S ribosomal protein S3 562  
204 4V6N 40 BF 30S ribosomal protein S3 562  
205 4V6O 6 AF 30S ribosomal protein S3 562  
206 4V6M 7 AC 30S ribosomal protein S3 83333  
207 4V6K 39 BG 30S ribosomal protein S3 83333  
208 4V6L 6 AG 30S ribosomal protein S3 83333  
209 4V5N 3 AC 30S RIBOSOMAL PROTEIN S3 300852  
210 4V5M 3 AC 30S RIBOSOMAL PROTEIN S3 300852  
211 4V7I 38 BC 30S ribosomal protein S3 83333  
212 4V65 15 AO 30S ribosomal protein S3 562  
213 4V66 15 AO 30S ribosomal protein S3 562  
214 4V47 29 BC 30S RIBOSOMAL PROTEIN S3 562  
215 4V48 31 BC 30S RIBOSOMAL PROTEIN S3 562  
216 1ML5 8 F 30S RIBOSOMAL PROTEIN S3 562  
217 1JGO 6 F 30S RIBOSOMAL PROTEIN S3 274  
218 1JGP 6 F 30S RIBOSOMAL PROTEIN S3 274  
219 1JGQ 6 F 30S RIBOSOMAL PROTEIN S3 274  
220 4V42 6 AF 30S RIBOSOMAL PROTEIN S3 274  
 
Sequence Clusters for the Sequence Entities in PDB 4JI8
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 204 25
95% 36 205 45
90% 36 205 47
70% 36 205 57
50% 47 290 35
40% 47 290 45
30% 52 342 46
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 206 23
95% 36 206 41
90% 36 206 43
70% 36 206 52
50% 41 284 41
40% 48 343 34
30% 48 344 45
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 18113
95% 36 213 32
90% 36 213 35
70% 41 295 24
50% 41 296 34
40% 41 296 44
30% 41 296 67
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 207 20
95% 36 207 39
90% 36 207 41
70% 36 207 50
50% 41 289 39
40% 41 289 49
30% 46 343 48
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 205 24
95% 36 205 46
90% 36 205 48
70% 36 206 55
50% 36 206 85
40% 36 206 110
30% 36 206 129
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 209 18
95% 38 214 30
90% 38 214 33
70% 38 214 43
50% 46 297 33
40% 46 298 43
30% 46 298 65
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 201 29
95% 36 206 43
90% 36 206 45
70% 36 206 54
50% 36 206 84
40% 36 207 109
30% 41 287 74
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 120 62
95% 36 200 47
90% 36 204 49
70% 36 204 58
50% 36 204 87
40% 36 204 112
30% 36 204 131
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 131 56
95% 33 180 55
90% 33 180 57
70% 33 180 72
50% 33 180 119
40% 33 180 143
30% 33 180 159
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 209 17
95% 37 209 34
90% 37 209 38
70% 37 209 47
50% 42 287 38
40% 42 287 48
30% 42 287 71
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 206 21
95% 36 207 36
90% 36 207 39
70% 36 207 48
50% 41 283 43
40% 41 284 51
30% 41 284 73
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 156 52
95% 36 205 44
90% 36 205 46
70% 36 205 56
50% 36 205 86
40% 36 205 111
30% 36 205 130
Entity #21: Chains: U - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 196 32
95% 36 196 51
90% 36 196 53
70% 36 196 64
50% 36 196 97
40% 36 196 120
30% 36 196 143
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 179 36
95% 33 179 56
90% 33 179 59
70% 33 179 73
50% 34 220 77
40% 34 220 101
30% 34 220 120
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 199 30
95% 36 207 37
90% 36 207 40
70% 36 207 49
50% 41 284 40
40% 41 285 50
30% 41 285 72
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 206 22
95% 36 206 40
90% 36 206 42
70% 36 206 51
50% 42 288 37
40% 42 288 47
30% 42 290 69
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 211 15
95% 43 217 28
90% 43 217 31
70% 43 217 41
50% 43 217 78
40% 43 217 102
30% 49 256 85
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 210 16
95% 37 211 33
90% 37 211 36
70% 37 211 45
50% 42 254 52
40% 42 255 67
30% 42 255 88
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 206 19
95% 37 206 38
90% 37 210 37
70% 37 210 46
50% 44 290 36
40% 45 292 46
30% 51 347 44
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 116 81
95% 36 206 42
90% 36 206 44
70% 36 206 53
50% 41 284 42
40% 41 284 52
30% 46 338 49
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.