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Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Sequence Clustering and Redundancy Reduction Results
4JI8
Cluster # 101 Members. Sequence cutoff: 40% Cluster size: 205 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4W2F 3 AC, CC 30S Ribosomal Protein S3 300852  
2 4W2G 3 AC, CC 30S Ribosomal Protein S3 300852  
3 4LFB 3 C ribosomal protein S3 300852  
4 1VY4 3 AC, CC 30S ribosomal protein S3 300852  
5 4W2I 3 AC, CC 30S Ribosomal Protein S3 300852  
6 1VY5 3 AC, CC 30S ribosomal protein S3 300852  
7 4W2H 3 AC, CC 30S Ribosomal Protein S3 300852  
8 4V8I 3 AC, CC 30S Ribosomal Protein S3 274  
9 4JI1 3 C RIBOSOMAL PROTEIN S3 300852  
10 4DR6 3 C 30S ribosomal protein S3 300852  
11 4LF7 3 C ribosomal protein S3 300852  
12 4LF8 3 C ribosomal protein S3 300852  
13 2VQE 3 C 30S RIBOSOMAL PROTEIN S3 300852  
14 2UUB 3 C 30S RIBOSOMAL PROTEIN S3 300852  
15 4DV6 3 C ribosomal protein S3 300852  
16 4DR5 3 C 30S ribosomal protein S3 300852  
17 4DR2 3 C 30S ribosomal protein S3 300852  
18 4LF9 3 C ribosomal protein S3 300852  
19 4DUY 3 C ribosomal protein S3 300852  
20 4DV7 3 C ribosomal protein S3 300852  
21 4V9P 35 BC, DC, FC, HC 30S ribosomal protein S3 83333  
22 4V8D 3 AF, CF 30S RIBOSOMAL PROTEIN S3 300852  
23 4DR3 3 C 30S ribosomal protein S3 300852  
24 4V90 3 AC 30S RIBOSOMAL PROTEIN S3 300852  
25 4JI3 3 C RIBOSOMAL PROTEIN S3 300852  
26 4JI6 3 C RIBOSOMAL PROTEIN S3 300852  
27 4JI8 3 C RIBOSOMAL PROTEIN S3 300852  
28 2UXC 3 C RIBOSOMAL PROTEIN S3 300852  
29 4V9R 3 AC, CC 30S Ribosomal Protein S3 274  
30 4B3M 3 C 30S RIBOSOMAL PROTEIN S3 300852  
31 4LF4 3 C ribosomal protein S3 300852  
32 4LF6 3 C ribosomal protein S3 300852  
33 4JI7 3 C RIBOSOMAL PROTEIN S3 300852  
34 4B3T 3 C 30S RIBOSOMAL PROTEIN S3 300852  
35 4V8B 3 AF, CF 30S RIBOSOMAL PROTEIN S3 300852  
36 4V9O 36 BC, DC, FC, HC 30S ribosomal protein S3 83333  
37 2VQF 3 C 30S RIBOSOMAL PROTEIN S3 300852  
38 2UUA 3 C 30S RIBOSOMAL PROTEIN S3 300852  
39 4V87 33 BF, CF 30S RIBOSOMAL PROTEIN S3 300852  
40 4V95 3 AC, CC 30S Ribosomal Protein S3 274  
41 1VY7 3 AC, CC 30S ribosomal protein S3 300852  
42 4B3R 3 C 30S RIBOSOMAL PROTEIN S3 300852  
43 4LNT 3 QC, XC 30S ribosomal protein S3 300852  
44 4DR1 3 C 30S ribosomal protein S3 300852  
45 4LFA 3 C ribosomal protein S3 300852  
46 4DV4 3 C ribosomal protein S3 300852  
47 4JI0 3 C ribosomal protein S3 300852  
48 4V9S 3 AC, CC 30S Ribosomal Protein S3 274  
49 4JI2 3 C RIBOSOMAL PROTEIN S3 300852  
50 4V6C 2 AC, CC 30S ribosomal protein S3 83333  
51 4DR7 3 C 30S ribosomal protein S3 300852  
52 1J5E 3 C 30S RIBOSOMAL PROTEIN S3 274  
53 4DUZ 3 C ribosomal protein S3 300852  
54 4V8G 3 AC, CC 30S Ribosomal Protein S3 300852  
55 4DV3 3 C ribosomal protein S3 300852  
56 4DV5 3 C ribosomal protein S3 300852  
57 2UUC 3 C 30S RIBOSOMAL PROTEIN S3 300852  
58 4LFC 3 C ribosomal protein S3 300852  
59 1FJG 4 C 30S RIBOSOMAL PROTEIN S3 274  
60 3T1Y 3 C 30S ribosomal protein S3 300852  
61 4JI4 3 C RIBOSOMAL PROTEIN S3 300852  
62 1VY6 3 AC, CC 30S ribosomal protein S3 300852  
63 1XMQ 5 C 30S Ribosomal Protein S3 274  
64 4DV0 3 C ribosomal protein S3 300852  
65 4V9B 3 AF, CF 30S RIBOSOMAL PROTEIN S3 300852  
66 4V6F 33 BF, CF 30S ribosomal protein S3 300852  
67 4V8F 33 BF, CF 30S RIBOSOMAL PROTEIN S3 300852  
68 4B3S 3 C 30S RIBOSOMAL PROTEIN S3 300852  
69 4DV2 3 C ribosomal protein S3 300852  
70 4DV1 3 C ribosomal protein S3 300852  
71 1N32 5 C 30S RIBOSOMAL PROTEIN S3 274  
72 1I94 3 C 30S RIBOSOMAL PROTEIN S3 274  
73 4V8H 3 AC, CC 30S Ribosomal Protein S3 300852  
74 4JI5 3 C RIBOSOMAL PROTEIN S3 300852  
75 4W2E 36 c 30S ribosomal protein S3 300852  
76 4V8C 33 CF, DF 30S RIBOSOMAL PROTEIN S3 300852  
77 4LF5 3 C ribosomal protein S3 300852  
78 4V9A 3 AF, CF 30S RIBOSOMAL PROTEIN S3 300852  
79 4V5J 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
80 4V7Y 3 AC, CC 30S ribosomal protein S3 300852  
81 4V9C 3 AC, CC 30S ribosomal protein S3 83333  
82 4V8E 33 BF, DF 30S RIBOSOMAL PROTEIN S3 300852  
83 4DR4 3 C 30S ribosomal protein S3 300852  
84 3OTO 3 C 30S RIBOSOMAL PROTEIN S3 300852  
85 2UU9 3 C 30S RIBOSOMAL PROTEIN S3 300852  
86 4V8Q 37 BC 30S RIBOSOMAL PROTEIN S3 300852  
87 4V85 3 AC 30S ribosomal protein S3 562  
88 1HR0 4 C 30S RIBOSOMAL PROTEIN S3 274  
89 4AQY 3 C 30S RIBOSOMAL PROTEIN S3 274  
90 4NXM 3 C ribosomal protein S3 300852  
91 4V5L 3 AC 30S RIBOSOMAL PROTEIN S3 300852  
92 4V7X 3 AC, CC 30S ribosomal protein S3 300852  
93 1IBL 6 C 30S RIBOSOMAL PROTEIN S3 274  
94 4V7W 3 AC, CC 30S ribosomal protein S3 300852  
95 4NXN 3 C ribosomal protein S3 300852  
96 1XNR 5 C 16S Ribosomal protein S3 274  
97 4LT8 3 QC, XC 30S ribosomal protein S3 300852  
98 4V51 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
99 4V7L 3 AC, CC 30S ribosomal protein S3 300852  
100 4V5R 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
101 1HNZ 4 C 30S RIBOSOMAL PROTEIN S3 274  
102 1XNQ 5 C Ribosomal protein S3 274  
103 4V8A 33 CC, DC 30S ribosomal protein S3 300852  
104 4V5K 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
105 4V5Q 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
106 4V7J 2 Ac, Bc 30S ribosomal protein S3 300852  
107 4V5C 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
108 4V5E 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
109 4L47 3 QC, XC 30S ribosomal protein S3 300852  
110 4V5P 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
111 4V5D 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
112 4V7Z 3 AC, CC 30S ribosomal protein S3 300852  
113 4V8X 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
114 4V5S 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
115 1XMO 5 C 30S ribosomal protein S3 274  
116 3T1H 3 C 30S ribosomal protein S3 300852  
117 2UXD 3 C RIBOSOMAL PROTEIN S3 300852  
118 1N33 5 C 30S RIBOSOMAL PROTEIN S3 274  
119 1IBK 4 C 30S RIBOSOMAL PROTEIN S3 274  
120 4V6G 3 AF, CF 30S RIBOSOMAL PROTEIN S3 300852  
121 4V8N 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
122 4V97 3 AC, CC 30S ribosomal protein S3 300852  
123 1HNW 4 C 30S RIBOSOMAL PROTEIN S3 274  
124 4V7M 3 AC, CC 30S ribosomal protein S3 300852  
125 1IBM 6 C 30S RIBOSOMAL PROTEIN S3 274  
126 4V6A 3 AC, CC 30S ribosomal protein S3 300852  
127 4V7K 2 Ac, Bc 30S ribosomal protein S3 300852  
128 1HNX 4 C 30S RIBOSOMAL PROTEIN S3 274  
129 4P70 3 QC, XC 30S ribosomal protein S3 300852  
130 4V8U 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
131 4LSK 3 QC, XC 30S ribosomal protein S3 300852  
132 4V6D 2 AC, CC 30S ribosomal protein S3 83333  
133 4P6F 3 QC, XC 30S ribosomal protein S3 300852  
134 4V67 5 AC, CC 30S ribosomal protein S3 274  
135 4V5F 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
136 1VVJ 3 QC, XC 30S ribosomal protein S3 300852  
137 4LFZ 3 QC, XC 30S ribosomal protein S3 300852  
138 2E5L 4 C 30S ribosomal protein S3 274  
139 4V6E 2 AC, CC 30S ribosomal protein S3 83333  
140 4V52 2 AC, CC 30S ribosomal protein S3 562  
141 2HHH 3 C 30S ribosomal protein S3 300852  
142 4V89 3 AC 30S ribosomal protein S3 562  
143 4OX9 3 C 30S ribosomal protein S3 300852  
144 4V54 2 AC, CC 30S ribosomal protein S3 562  
145 2UXB 3 C RIBOSOMAL PROTEIN S3 300852  
146 1I96 3 C 30S RIBOSOMAL PROTEIN S3 274  
147 4V50 5 AC, CC 30S ribosomal protein S3 562  
148 1N34 4 C 30S RIBOSOMAL PROTEIN S3 274  
149 4V57 2 AC, CC 30S ribosomal protein S3 562  
150 4V5A 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
151 4V63 5 AC, CC 30S ribosomal protein S3 262724  
152 4L71 3 QC, XC 30S ribosomal protein S3 300852  
153 4KVB 3 C 30S ribosomal protein S3 262724  
154 4V64 2 AC, CC 30S ribosomal protein S3 562  
155 4V8J 3 AC, CC 30S ribosomal protein S3 300852  
156 1N36 3 C 30S RIBOSOMAL PROTEIN S3 274  
157 2ZM6 3 C 30S ribosomal protein S3 274  
158 4V4H 2 AC, CC 30S RIBOSOMAL PROTEIN S3 562  
159 4V4Q 2 AC, CC 30S ribosomal protein S3 562  
160 4V5B 35 BC, DC 30S RIBOSOMAL PROTEIN S3 RESIDUES 2-233 562  
161 4LEL 3 QC, XC 30S ribosomal protein S3 300852  
162 4V53 2 AC, CC 30S ribosomal protein S3 562  
163 2F4V 4 C 30S ribosomal protein S3 274  
164 4V5G 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
165 4V56 2 AC, CC 30S ribosomal protein S3 562  
166 1I97 3 C 30S RIBOSOMAL PROTEIN S3 274  
167 4V55 2 AC, CC 30S ribosomal protein S3 562  
168 1I95 3 C 30S RIBOSOMAL PROTEIN S3 274  
169 4V8O 3 AC 30S RIBOSOMAL PROTEIN S3 300852  
170 4V5Y 2 AC, CC 30S ribosomal protein S3 562  
171 4V4Y 5 AF 30S ribosomal protein S3 300852  
172 4V4J 36 d 30S ribosomal protein S3 262724  
173 4V4X 5 AF 30S ribosomal protein S3 300852  
174 4V4Z 6 AF 30S ribosomal protein S3 300852  
175 4V4I 36 d 30S ribosomal protein S3 262724  
176 4V4P 38 BF 30S ribosomal protein S3 300852  
177 4V4R 6 AC 30S ribosomal protein S3 300852  
178 4V4S 6 AC 30S ribosomal protein S3 300852  
179 4V4T 6 AC 30S ribosomal protein S3 300852  
180 4V7D 37 BC 30S ribosomal protein S3 562  
181 4V7C 3 AC 30S ribosomal protein S3 562  
182 4V7B 3 AC 30S ribosomal protein S3 83333  
183 4V6V 14 AC 30S ribosomal protein S3 562  
184 4ADV 3 C 30S RIBOSOMAL PROTEIN S3 562  
185 4V6S 39 BE 30S ribosomal protein S3 562  
186 4V6P 6 AF 30S ribosomal protein S3 562  
187 4V6Q 6 AF 30S ribosomal protein S3 562  
188 4V6R 6 AF 30S ribosomal protein S3 562  
189 4V6N 40 BF 30S ribosomal protein S3 562  
190 4V6O 6 AF 30S ribosomal protein S3 562  
191 4V6M 7 AC 30S ribosomal protein S3 83333  
192 4V6K 39 BG 30S ribosomal protein S3 83333  
193 4V6L 6 AG 30S ribosomal protein S3 83333  
194 4V5N 3 AC 30S RIBOSOMAL PROTEIN S3 300852  
195 4V5M 3 AC 30S RIBOSOMAL PROTEIN S3 300852  
196 4V7I 38 BC 30S ribosomal protein S3 83333  
197 4V65 15 AO 30S ribosomal protein S3 562  
198 4V66 15 AO 30S ribosomal protein S3 562  
199 4V47 29 BC 30S RIBOSOMAL PROTEIN S3 562  
200 4V48 31 BC 30S RIBOSOMAL PROTEIN S3 562  
201 1ML5 8 F 30S RIBOSOMAL PROTEIN S3 562  
202 1JGO 6 F 30S RIBOSOMAL PROTEIN S3 274  
203 1JGP 6 F 30S RIBOSOMAL PROTEIN S3 274  
204 1JGQ 6 F 30S RIBOSOMAL PROTEIN S3 274  
205 4V42 6 AF 30S RIBOSOMAL PROTEIN S3 274  
 
Sequence Clusters for the Sequence Entities in PDB 4JI8
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 187 28
95% 29 188 47
90% 29 188 50
70% 29 188 60
50% 39 269 34
40% 39 269 45
30% 39 274 65
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 189 26
95% 29 189 43
90% 29 189 46
70% 29 189 56
50% 33 263 41
40% 40 316 35
30% 40 316 45
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 17466
95% 29 196 35
90% 29 196 37
70% 33 275 24
50% 33 275 33
40% 33 275 44
30% 33 275 69
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 190 23
95% 29 190 41
90% 29 190 44
70% 29 190 54
50% 33 268 38
40% 33 268 51
30% 38 317 48
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 188 27
95% 29 188 48
90% 29 188 51
70% 29 188 61
50% 29 188 94
40% 29 188 119
30% 29 188 142
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 192 21
95% 31 197 33
90% 31 197 35
70% 31 197 47
50% 38 276 32
40% 38 276 43
30% 38 276 66
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 184 29
95% 29 189 45
90% 29 189 48
70% 29 189 58
50% 29 189 92
40% 29 189 117
30% 33 266 76
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 21 104 55
95% 29 183 49
90% 29 187 52
70% 29 187 62
50% 29 187 95
40% 29 187 120
30% 29 187 143
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 119 49
95% 26 168 61
90% 26 168 64
70% 26 168 80
50% 26 168 117
40% 26 168 139
30% 26 168 161
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 170 37
95% 27 170 59
90% 27 170 63
70% 27 170 78
50% 34 266 37
40% 34 266 50
30% 34 266 73
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 189 24
95% 29 190 38
90% 29 190 42
70% 29 190 52
50% 29 190 91
40% 33 263 54
30% 33 263 75
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 140 42
95% 29 188 46
90% 29 188 49
70% 29 188 59
50% 29 188 93
40% 29 188 118
30% 29 188 141
Entity #21: Chains: U - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 179 34
95% 29 179 54
90% 29 179 56
70% 29 179 69
50% 29 179 105
40% 29 179 132
30% 29 179 151
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 26 166 38
95% 26 166 63
90% 26 166 66
70% 26 166 82
50% 27 205 77
40% 27 205 101
30% 27 205 120
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 182 31
95% 29 190 39
90% 29 190 43
70% 29 190 53
50% 33 263 39
40% 33 264 52
30% 33 264 74
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 189 25
95% 29 189 42
90% 29 189 45
70% 29 189 55
50% 34 267 36
40% 34 267 49
30% 34 269 72
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 194 19
95% 36 200 29
90% 36 200 30
70% 36 200 45
50% 36 200 86
40% 36 200 108
30% 41 237 93
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 193 20
95% 30 194 36
90% 30 194 38
70% 30 194 50
50% 34 235 56
40% 34 236 73
30% 34 236 96
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 189 22
95% 30 189 40
90% 30 193 39
70% 30 193 51
50% 36 269 35
40% 37 271 46
30% 43 321 44
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 102 76
95% 29 189 44
90% 29 189 47
70% 29 189 57
50% 33 263 40
40% 33 263 55
30% 38 312 51
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.