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Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Sequence Clustering and Redundancy Reduction Results
4JI8
Cluster # 120 Members. Sequence cutoff: 30% Cluster size: 210 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4W2F 3 AC, CC 30S Ribosomal Protein S3 300852  
2 4W2G 3 AC, CC 30S Ribosomal Protein S3 300852  
3 4LFB 3 C ribosomal protein S3 300852  
4 1VY4 3 AC, CC 30S ribosomal protein S3 300852  
5 4W2I 3 AC, CC 30S Ribosomal Protein S3 300852  
6 1VY5 3 AC, CC 30S ribosomal protein S3 300852  
7 4WQF 36 BC, DC 30S ribosomal protein S3 300852  
8 4W2H 3 AC, CC 30S Ribosomal Protein S3 300852  
9 4WPO 36 BC, DC 30S ribosomal protein S3 300852  
10 4V8I 3 AC, CC 30S Ribosomal Protein S3 274  
11 4JI1 3 C RIBOSOMAL PROTEIN S3 300852  
12 4DR6 3 C 30S ribosomal protein S3 300852  
13 4LF7 3 C ribosomal protein S3 300852  
14 4LF8 3 C ribosomal protein S3 300852  
15 4WQU 36 BC, DC 30S ribosomal protein S3 300852  
16 2VQE 3 C 30S RIBOSOMAL PROTEIN S3 300852  
17 2UUB 3 C 30S RIBOSOMAL PROTEIN S3 300852  
18 4DV6 3 C ribosomal protein S3 300852  
19 4DR5 3 C 30S ribosomal protein S3 300852  
20 4DR2 3 C 30S ribosomal protein S3 300852  
21 4LF9 3 C ribosomal protein S3 300852  
22 4WQY 36 BC, DC 30S ribosomal protein S3 300852  
23 4DUY 3 C ribosomal protein S3 300852  
24 4DV7 3 C ribosomal protein S3 300852  
25 4V9P 35 BC, DC, FC, HC 30S ribosomal protein S3 83333  
26 4V8D 3 AF, CF 30S RIBOSOMAL PROTEIN S3 300852  
27 4DR3 3 C 30S ribosomal protein S3 300852  
28 4V90 3 AC 30S RIBOSOMAL PROTEIN S3 300852  
29 4JI3 3 C RIBOSOMAL PROTEIN S3 300852  
30 4JI6 3 C RIBOSOMAL PROTEIN S3 300852  
31 4JI8 3 C RIBOSOMAL PROTEIN S3 300852  
32 2UXC 3 C RIBOSOMAL PROTEIN S3 300852  
33 4V9R 3 AC, CC 30S Ribosomal Protein S3 274  
34 4B3M 3 C 30S RIBOSOMAL PROTEIN S3 300852  
35 4LF4 3 C ribosomal protein S3 300852  
36 4LF6 3 C ribosomal protein S3 300852  
37 4JI7 3 C RIBOSOMAL PROTEIN S3 300852  
38 4B3T 3 C 30S RIBOSOMAL PROTEIN S3 300852  
39 4V8B 3 AF, CF 30S RIBOSOMAL PROTEIN S3 300852  
40 4V9O 36 BC, DC, FC, HC 30S ribosomal protein S3 83333  
41 2VQF 3 C 30S RIBOSOMAL PROTEIN S3 300852  
42 2UUA 3 C 30S RIBOSOMAL PROTEIN S3 300852  
43 4V87 33 BF, CF 30S RIBOSOMAL PROTEIN S3 300852  
44 4V95 3 AC, CC 30S Ribosomal Protein S3 274  
45 1VY7 3 AC, CC 30S ribosomal protein S3 300852  
46 4B3R 3 C 30S RIBOSOMAL PROTEIN S3 300852  
47 4LNT 3 QC, XC 30S ribosomal protein S3 300852  
48 4DR1 3 C 30S ribosomal protein S3 300852  
49 4LFA 3 C ribosomal protein S3 300852  
50 4DV4 3 C ribosomal protein S3 300852  
51 4JI0 3 C ribosomal protein S3 300852  
52 4V9S 3 AC, CC 30S Ribosomal Protein S3 274  
53 4JI2 3 C RIBOSOMAL PROTEIN S3 300852  
54 4V6C 2 AC, CC 30S ribosomal protein S3 83333  
55 4DR7 3 C 30S ribosomal protein S3 300852  
56 1J5E 3 C 30S RIBOSOMAL PROTEIN S3 274  
57 4DUZ 3 C ribosomal protein S3 300852  
58 4V8G 3 AC, CC 30S Ribosomal Protein S3 300852  
59 4DV3 3 C ribosomal protein S3 300852  
60 4DV5 3 C ribosomal protein S3 300852  
61 2UUC 3 C 30S RIBOSOMAL PROTEIN S3 300852  
62 4LFC 3 C ribosomal protein S3 300852  
63 1FJG 4 C 30S RIBOSOMAL PROTEIN S3 274  
64 3T1Y 3 C 30S ribosomal protein S3 300852  
65 4JI4 3 C RIBOSOMAL PROTEIN S3 300852  
66 1VY6 3 AC, CC 30S ribosomal protein S3 300852  
67 1XMQ 5 C 30S Ribosomal Protein S3 274  
68 4DV0 3 C ribosomal protein S3 300852  
69 4V9B 3 AF, CF 30S RIBOSOMAL PROTEIN S3 300852  
70 4V6F 33 BF, CF 30S ribosomal protein S3 300852  
71 4V8F 33 BF, CF 30S RIBOSOMAL PROTEIN S3 300852  
72 4B3S 3 C 30S RIBOSOMAL PROTEIN S3 300852  
73 4DV2 3 C ribosomal protein S3 300852  
74 4DV1 3 C ribosomal protein S3 300852  
75 1N32 5 C 30S RIBOSOMAL PROTEIN S3 274  
76 1I94 3 C 30S RIBOSOMAL PROTEIN S3 274  
77 4V8H 3 AC, CC 30S Ribosomal Protein S3 300852  
78 4JI5 3 C RIBOSOMAL PROTEIN S3 300852  
79 4W2E 36 c 30S ribosomal protein S3 300852  
80 4V8C 33 CF, DF 30S RIBOSOMAL PROTEIN S3 300852  
81 4LF5 3 C ribosomal protein S3 300852  
82 4V9A 3 AF, CF 30S RIBOSOMAL PROTEIN S3 300852  
83 4V5J 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
84 4V7Y 3 AC, CC 30S ribosomal protein S3 300852  
85 4V9C 3 AC, CC 30S ribosomal protein S3 83333  
86 4V8E 33 BF, DF 30S RIBOSOMAL PROTEIN S3 300852  
87 4DR4 3 C 30S ribosomal protein S3 300852  
88 3OTO 3 C 30S RIBOSOMAL PROTEIN S3 300852  
89 2UU9 3 C 30S RIBOSOMAL PROTEIN S3 300852  
90 4V8Q 37 BC 30S RIBOSOMAL PROTEIN S3 300852  
91 4V85 3 AC 30S ribosomal protein S3 562  
92 1HR0 4 C 30S RIBOSOMAL PROTEIN S3 274  
93 4AQY 3 C 30S RIBOSOMAL PROTEIN S3 274  
94 4NXM 3 C ribosomal protein S3 300852  
95 4V5L 3 AC 30S RIBOSOMAL PROTEIN S3 300852  
96 4V7X 3 AC, CC 30S ribosomal protein S3 300852  
97 1IBL 6 C 30S RIBOSOMAL PROTEIN S3 274  
98 4V7W 3 AC, CC 30S ribosomal protein S3 300852  
99 4WT8 3 C 30S ribosomal protein S3 300852  
100 4NXN 3 C ribosomal protein S3 300852  
101 1XNR 5 C 16S Ribosomal protein S3 274  
102 4LT8 3 QC, XC 30S ribosomal protein S3 300852  
103 4V51 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
104 4V7L 3 AC, CC 30S ribosomal protein S3 300852  
105 4V5R 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
106 1HNZ 4 C 30S RIBOSOMAL PROTEIN S3 274  
107 1XNQ 5 C Ribosomal protein S3 274  
108 4V8A 33 CC, DC 30S ribosomal protein S3 300852  
109 4V5K 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
110 4V5Q 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
111 4V7J 2 Ac, Bc 30S ribosomal protein S3 300852  
112 4V5C 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
113 4V5E 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
114 4L47 3 QC, XC 30S ribosomal protein S3 300852  
115 4V5P 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
116 4V5D 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
117 4V7Z 3 AC, CC 30S ribosomal protein S3 300852  
118 4V8X 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
119 4V5S 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
120 1XMO 5 C 30S ribosomal protein S3 274  
121 3T1H 3 C 30S ribosomal protein S3 300852  
122 2UXD 3 C RIBOSOMAL PROTEIN S3 300852  
123 1N33 5 C 30S RIBOSOMAL PROTEIN S3 274  
124 1IBK 4 C 30S RIBOSOMAL PROTEIN S3 274  
125 4V6G 3 AF, CF 30S RIBOSOMAL PROTEIN S3 300852  
126 4V8N 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
127 4V97 3 AC, CC 30S ribosomal protein S3 300852  
128 1HNW 4 C 30S RIBOSOMAL PROTEIN S3 274  
129 4V7M 3 AC, CC 30S ribosomal protein S3 300852  
130 1IBM 6 C 30S RIBOSOMAL PROTEIN S3 274  
131 4V6A 3 AC, CC 30S ribosomal protein S3 300852  
132 4V7K 2 Ac, Bc 30S ribosomal protein S3 300852  
133 1HNX 4 C 30S RIBOSOMAL PROTEIN S3 274  
134 4P70 3 QC, XC 30S ribosomal protein S3 300852  
135 4V8U 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
136 4LSK 3 QC, XC 30S ribosomal protein S3 300852  
137 4V6D 2 AC, CC 30S ribosomal protein S3 83333  
138 4P6F 3 QC, XC 30S ribosomal protein S3 300852  
139 4V67 5 AC, CC 30S ribosomal protein S3 274  
140 4V5F 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
141 1VVJ 3 QC, XC 30S ribosomal protein S3 300852  
142 4LFZ 3 QC, XC 30S ribosomal protein S3 300852  
143 2E5L 4 C 30S ribosomal protein S3 274  
144 4V6E 2 AC, CC 30S ribosomal protein S3 83333  
145 4V52 2 AC, CC 30S ribosomal protein S3 562  
146 2HHH 3 C 30S ribosomal protein S3 300852  
147 4V89 3 AC 30S ribosomal protein S3 562  
148 4OX9 3 C 30S ribosomal protein S3 300852  
149 4V54 2 AC, CC 30S ribosomal protein S3 562  
150 2UXB 3 C RIBOSOMAL PROTEIN S3 300852  
151 1I96 3 C 30S RIBOSOMAL PROTEIN S3 274  
152 4V50 5 AC, CC 30S ribosomal protein S3 562  
153 1N34 4 C 30S RIBOSOMAL PROTEIN S3 274  
154 4V57 2 AC, CC 30S ribosomal protein S3 562  
155 4V5A 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
156 4V63 5 AC, CC 30S ribosomal protein S3 262724  
157 4L71 3 QC, XC 30S ribosomal protein S3 300852  
158 4KVB 3 C 30S ribosomal protein S3 262724  
159 4V64 2 AC, CC 30S ribosomal protein S3 562  
160 4V8J 3 AC, CC 30S ribosomal protein S3 300852  
161 1N36 3 C 30S RIBOSOMAL PROTEIN S3 274  
162 2ZM6 3 C 30S ribosomal protein S3 274  
163 4V4H 2 AC, CC 30S RIBOSOMAL PROTEIN S3 562  
164 4V4Q 2 AC, CC 30S ribosomal protein S3 562  
165 4V5B 35 BC, DC 30S RIBOSOMAL PROTEIN S3 RESIDUES 2-233 562  
166 4LEL 3 QC, XC 30S ribosomal protein S3 300852  
167 4V53 2 AC, CC 30S ribosomal protein S3 562  
168 2F4V 4 C 30S ribosomal protein S3 274  
169 4V5G 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
170 4V56 2 AC, CC 30S ribosomal protein S3 562  
171 1I97 3 C 30S RIBOSOMAL PROTEIN S3 274  
172 4V55 2 AC, CC 30S ribosomal protein S3 562  
173 1I95 3 C 30S RIBOSOMAL PROTEIN S3 274  
174 4V8O 3 AC 30S RIBOSOMAL PROTEIN S3 300852  
175 4V5Y 2 AC, CC 30S ribosomal protein S3 562  
176 4V4Y 5 AF 30S ribosomal protein S3 300852  
177 4V4J 36 d 30S ribosomal protein S3 262724  
178 4V4X 5 AF 30S ribosomal protein S3 300852  
179 4V4Z 6 AF 30S ribosomal protein S3 300852  
180 4V4I 36 d 30S ribosomal protein S3 262724  
181 4V4P 38 BF 30S ribosomal protein S3 300852  
182 4V4R 6 AC 30S ribosomal protein S3 300852  
183 4V4S 6 AC 30S ribosomal protein S3 300852  
184 4V4T 6 AC 30S ribosomal protein S3 300852  
185 4V7D 37 BC 30S ribosomal protein S3 562  
186 4V7C 3 AC 30S ribosomal protein S3 562  
187 4V7B 3 AC 30S ribosomal protein S3 83333  
188 4V6V 14 AC 30S ribosomal protein S3 562  
189 4ADV 3 C 30S RIBOSOMAL PROTEIN S3 562  
190 4V6S 39 BE 30S ribosomal protein S3 562  
191 4V6P 6 AF 30S ribosomal protein S3 562  
192 4V6Q 6 AF 30S ribosomal protein S3 562  
193 4V6R 6 AF 30S ribosomal protein S3 562  
194 4V6N 40 BF 30S ribosomal protein S3 562  
195 4V6O 6 AF 30S ribosomal protein S3 562  
196 4V6M 7 AC 30S ribosomal protein S3 83333  
197 4V6K 39 BG 30S ribosomal protein S3 83333  
198 4V6L 6 AG 30S ribosomal protein S3 83333  
199 4V5N 3 AC 30S RIBOSOMAL PROTEIN S3 300852  
200 4V5M 3 AC 30S RIBOSOMAL PROTEIN S3 300852  
201 4V7I 38 BC 30S ribosomal protein S3 83333  
202 4V65 15 AO 30S ribosomal protein S3 562  
203 4V66 15 AO 30S ribosomal protein S3 562  
204 4V47 29 BC 30S RIBOSOMAL PROTEIN S3 562  
205 4V48 31 BC 30S RIBOSOMAL PROTEIN S3 562  
206 1ML5 8 F 30S RIBOSOMAL PROTEIN S3 562  
207 1JGO 6 F 30S RIBOSOMAL PROTEIN S3 274  
208 1JGP 6 F 30S RIBOSOMAL PROTEIN S3 274  
209 1JGQ 6 F 30S RIBOSOMAL PROTEIN S3 274  
210 4V42 6 AF 30S RIBOSOMAL PROTEIN S3 274  
 
Sequence Clusters for the Sequence Entities in PDB 4JI8
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 193 28
95% 33 194 45
90% 33 194 47
70% 33 194 58
50% 43 275 34
40% 43 275 45
30% 43 280 65
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 195 26
95% 33 195 41
90% 33 195 43
70% 33 195 54
50% 37 269 41
40% 44 322 35
30% 44 322 44
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 17605
95% 33 202 32
90% 33 202 33
70% 37 281 23
50% 37 281 33
40% 37 281 44
30% 37 281 68
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 196 23
95% 33 196 39
90% 33 196 41
70% 33 196 52
50% 37 274 38
40% 37 274 50
30% 42 323 47
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 194 27
95% 33 194 46
90% 33 194 48
70% 33 194 59
50% 33 194 92
40% 33 194 115
30% 33 194 137
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 198 21
95% 35 203 30
90% 35 203 31
70% 35 203 43
50% 42 282 32
40% 42 282 42
30% 42 282 67
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 190 29
95% 33 195 43
90% 33 195 45
70% 33 195 56
50% 33 195 89
40% 33 195 113
30% 37 272 76
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 110 54
95% 33 189 48
90% 33 193 50
70% 33 193 61
50% 33 193 95
40% 33 193 120
30% 33 193 139
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 123 47
95% 30 172 58
90% 30 172 62
70% 30 172 76
50% 30 172 111
40% 30 172 137
30% 30 172 156
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 174 36
95% 31 174 57
90% 31 174 61
70% 31 174 75
50% 38 272 37
40% 38 272 49
30% 38 272 72
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 195 24
95% 33 196 36
90% 33 196 39
70% 33 196 50
50% 33 196 87
40% 37 269 52
30% 37 269 75
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 146 42
95% 33 194 44
90% 33 194 46
70% 33 194 57
50% 33 194 91
40% 33 194 114
30% 33 194 136
Entity #21: Chains: U - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 185 32
95% 33 185 51
90% 33 185 54
70% 33 185 65
50% 33 185 101
40% 33 185 127
30% 33 185 147
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 171 37
95% 30 171 59
90% 30 171 63
70% 30 171 77
50% 31 210 73
40% 31 210 97
30% 31 210 120
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 188 30
95% 33 196 37
90% 33 196 40
70% 33 196 51
50% 37 269 39
40% 37 270 51
30% 37 270 73
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 195 25
95% 33 195 40
90% 33 195 42
70% 33 195 53
50% 38 273 36
40% 38 273 48
30% 38 275 70
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 200 17
95% 40 206 29
90% 40 206 30
70% 40 206 40
50% 40 206 80
40% 40 206 105
30% 45 243 90
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 199 20
95% 34 200 33
90% 34 200 34
70% 34 200 47
50% 38 241 54
40% 38 242 70
30% 38 242 94
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 195 22
95% 34 195 38
90% 34 199 35
70% 34 199 48
50% 40 275 35
40% 41 277 46
30% 47 327 43
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 106 73
95% 33 195 42
90% 33 195 44
70% 33 195 55
50% 37 269 40
40% 37 269 53
30% 42 318 49
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.