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Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Sequence Clustering and Redundancy Reduction Results
4JI8
Cluster # 39 Members. Sequence cutoff: 100% Cluster size: 219 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4LFB 3 C ribosomal protein S3 300852  
2 4QCM 3 C 30S ribosomal protein S3 300852  
3 4QCO 3 C 30S ribosomal protein S3 300852  
4 4QCQ 3 C 30S ribosomal protein S3 300852  
5 4QCS 3 C 30S ribosomal protein S3 300852  
6 3V2C 3 C 30S Ribosomal Protein S3 274  
7 3V2E 3 C 30S Ribosomal Protein S3 274  
8 4JI1 3 C RIBOSOMAL PROTEIN S3 300852  
9 4DR6 3 C 30S ribosomal protein S3 300852  
10 4LF7 3 C ribosomal protein S3 300852  
11 4LF8 3 C ribosomal protein S3 300852  
12 2VQE 3 C 30S RIBOSOMAL PROTEIN S3 300852  
13 2UUB 3 C 30S RIBOSOMAL PROTEIN S3 300852  
14 4DV6 3 C ribosomal protein S3 300852  
15 4DR5 3 C 30S ribosomal protein S3 300852  
16 4DR2 3 C 30S ribosomal protein S3 300852  
17 4LF9 3 C ribosomal protein S3 300852  
18 4DUY 3 C ribosomal protein S3 300852  
19 4DV7 3 C ribosomal protein S3 300852  
20 3UZ6 3 F 30S RIBOSOMAL PROTEIN S3 300852  
21 3UZ7 3 F 30S RIBOSOMAL PROTEIN S3 300852  
22 4DR3 3 C 30S ribosomal protein S3 300852  
23 4CR1 3 C 30S RIBOSOMAL PROTEIN S3 300852  
24 4JI3 3 C RIBOSOMAL PROTEIN S3 300852  
25 4JI6 3 C RIBOSOMAL PROTEIN S3 300852  
26 4JI8 3 C RIBOSOMAL PROTEIN S3 300852  
27 2UXC 3 C RIBOSOMAL PROTEIN S3 300852  
28 4NVU 3 C 30S Ribosomal Protein S3 274  
29 4NVW 3 C 30S Ribosomal Protein S3 274  
30 4B3M 3 C 30S RIBOSOMAL PROTEIN S3 300852  
31 4LF4 3 C ribosomal protein S3 300852  
32 4LF6 3 C ribosomal protein S3 300852  
33 4JI7 3 C RIBOSOMAL PROTEIN S3 300852  
34 4B3T 3 C 30S RIBOSOMAL PROTEIN S3 300852  
35 3UYD 3 F 30S RIBOSOMAL PROTEIN S3 300852  
36 3UYF 3 F 30S RIBOSOMAL PROTEIN S3 300852  
37 2VQF 3 C 30S RIBOSOMAL PROTEIN S3 300852  
38 2UUA 3 C 30S RIBOSOMAL PROTEIN S3 300852  
39 3TVF 3 F 30S RIBOSOMAL PROTEIN S3 300852  
40 3TVG 3 F 30S RIBOSOMAL PROTEIN S3 300852  
41 4DH9 3 C 30S Ribosomal Protein S3 274  
42 4DHB 3 C 30S Ribosomal Protein S3 274  
43 4QCY 3 C 30S ribosomal protein S3 300852  
44 4QD0 3 C 30S ribosomal protein S3 300852  
45 4B3R 3 C 30S RIBOSOMAL PROTEIN S3 300852  
46 1VX8 3 C 30S ribosomal protein S3 300852  
47 1VXI 3 C 30S ribosomal protein S3 300852  
48 4DR1 3 C 30S ribosomal protein S3 300852  
49 4LFA 3 C ribosomal protein S3 300852  
50 4DV4 3 C ribosomal protein S3 300852  
51 4JI0 3 C ribosomal protein S3 300852  
52 4NVY 3 C 30S Ribosomal Protein S3 274  
53 4NW0 3 C 30S Ribosomal Protein S3 274  
54 4JI2 3 C RIBOSOMAL PROTEIN S3 300852  
55 4DR7 3 C 30S ribosomal protein S3 300852  
56 1J5E 3 C 30S RIBOSOMAL PROTEIN S3 274  
57 4DUZ 3 C ribosomal protein S3 300852  
58 3V22 3 C 30S Ribosomal Protein S3 300852  
59 3V24 3 C 30S ribosomal protein S3 300852  
60 4DV3 3 C ribosomal protein S3 300852  
61 4DV5 3 C ribosomal protein S3 300852  
62 2UUC 3 C 30S RIBOSOMAL PROTEIN S3 300852  
63 4LFC 3 C ribosomal protein S3 300852  
64 1FJG 4 C 30S RIBOSOMAL PROTEIN S3 274  
65 3T1Y 3 C 30S ribosomal protein S3 300852  
66 4JI4 3 C RIBOSOMAL PROTEIN S3 300852  
67 4QCU 3 C 30S ribosomal protein S3 300852  
68 4QCW 3 C 30S ribosomal protein S3 300852  
69 1XMQ 5 C 30S Ribosomal Protein S3 274  
70 4DV0 3 C ribosomal protein S3 300852  
71 4G5T 3 F 30S RIBOSOMAL PROTEIN S3 300852  
72 4G5V 3 F 30S RIBOSOMAL PROTEIN S3 300852  
73 3I8G 3 F 30S ribosomal protein S3 300852  
74 3I8H 3 F 30S ribosomal protein S3 300852  
75 3UZL 3 F 30S RIBOSOMAL PROTEIN S3 300852  
76 3UZM 3 F 30S RIBOSOMAL PROTEIN S3 300852  
77 4B3S 3 C 30S RIBOSOMAL PROTEIN S3 300852  
78 4DV2 3 C ribosomal protein S3 300852  
79 4DV1 3 C ribosomal protein S3 300852  
80 1N32 5 C 30S RIBOSOMAL PROTEIN S3 274  
81 1I94 3 C 30S RIBOSOMAL PROTEIN S3 274  
82 3V26 3 C 30S Ribosomal Protein S3 300852  
83 3V28 3 C 30S Ribosomal Protein S3 300852  
84 4JI5 3 C RIBOSOMAL PROTEIN S3 300852  
85 3UZ3 3 F 30S RIBOSOMAL PROTEIN S3 300852  
86 3UZ4 3 F 30S RIBOSOMAL PROTEIN S3 300852  
87 4LF5 3 C ribosomal protein S3 300852  
88 4G5K 3 F 30S RIBOSOMAL PROTEIN S3 300852  
89 4G5M 3 F 30S RIBOSOMAL PROTEIN S3 300852  
90 2X9R 3 C 30S RIBOSOMAL PROTEIN S3 300852  
91 2X9T 3 C 30S RIBOSOMAL PROTEIN S3 300852  
92 3OHY 3 C 30S ribosomal protein S3 300852  
93 3OI0 3 C 30S ribosomal protein S3 300852  
94 3UZG 3 F 30S RIBOSOMAL PROTEIN S3 300852  
95 3UZI 3 F 30S RIBOSOMAL PROTEIN S3 300852  
96 4DR4 3 C 30S ribosomal protein S3 300852  
97 3OTO 3 C 30S RIBOSOMAL PROTEIN S3 300852  
98 2UU9 3 C 30S RIBOSOMAL PROTEIN S3 300852  
99 4ABR 4 C 30S RIBOSOMAL PROTEIN S3 300852  
100 1HR0 4 C 30S RIBOSOMAL PROTEIN S3 274  
101 4AQY 3 C 30S RIBOSOMAL PROTEIN S3 274  
102 4NXM 3 C ribosomal protein S3 300852  
103 2XQD 3 C 30S RIBOSOMAL PROTEIN S3 300852  
104 3OHC 3 C 30S ribosomal protein S3 300852  
105 3OHD 3 C 30S ribosomal protein S3 300852  
106 1IBL 6 C 30S RIBOSOMAL PROTEIN S3 274  
107 3OGE 3 C 30S ribosomal protein S3 300852  
108 3OGY 3 C 30S ribosomal protein S3 300852  
109 4NXN 3 C ribosomal protein S3 300852  
110 1XNR 5 C 16S Ribosomal protein S3 274  
111 1VXP 3 C 30S ribosomal protein S3 300852  
112 1VXS 3 C 30S ribosomal protein S3 300852  
113 2J00 3 C 30S RIBOSOMAL PROTEIN S3 300852  
114 2J02 3 C 30S RIBOSOMAL PROTEIN S3 300852  
115 3KNH 3 C 30S ribosomal protein S3 300852  
116 2Y10 3 C 30S RIBOSOMAL PROTEIN S3 300852  
117 2Y18 3 C 30S RIBOSOMAL PROTEIN S3 300852  
118 1HNZ 4 C 30S RIBOSOMAL PROTEIN S3 274  
119 1XNQ 5 C Ribosomal protein S3 274  
120 3UXS 3 C 30S ribosomal protein S3 300852  
121 3UXT 3 C 30S ribosomal protein S3 300852  
122 2XG1 3 C 30S RIBOSOMAL PROTEIN S3 300852  
123 2XFZ 3 C 30S RIBOSOMAL PROTEIN S3 300852  
124 2Y0Y 3 C 30S RIBOSOMAL PROTEIN S3 300852  
125 2Y12 3 C 30S RIBOSOMAL PROTEIN S3 300852  
126 3KIQ 2 c 30S ribosomal protein S3 300852  
127 3KIS 2 c 30S ribosomal protein S3 300852  
128 2WDG 3 C 30S RIBOSOMAL PROTEIN S3 300852  
129 2WDH 3 C 30S RIBOSOMAL PROTEIN S3 300852  
130 2WH1 3 C 30S RIBOSOMAL PROTEIN S3 300852  
131 2WH3 3 C 30S RIBOSOMAL PROTEIN S3 300852  
132 1VVL 3 C 30S ribosomal protein S3 300852  
133 1VVN 3 C 30S ribosomal protein S3 300852  
134 2Y0U 3 C 30S RIBOSOMAL PROTEIN S3 300852  
135 2Y0W 3 C 30S RIBOSOMAL PROTEIN S3 300852  
136 2WDK 3 C 30S RIBOSOMAL PROTEIN S3 300852  
137 2WDM 3 C 30S RIBOSOMAL PROTEIN S3 300852  
138 3OI2 3 C 30S ribosomal protein S3 300852  
139 3OI4 3 C 30S ribosomal protein S3 300852  
140 4BYB 3 C 30S RIBOSOMAL PROTEIN S3 300852  
141 4BYD 3 C 30S RIBOSOMAL PROTEIN S3 300852  
142 2Y14 3 C 30S RIBOSOMAL PROTEIN S3 300852  
143 2Y16 3 C 30S RIBOSOMAL PROTEIN S3 300852  
144 1XMO 5 C 30S ribosomal protein S3 274  
145 3T1H 3 C 30S ribosomal protein S3 300852  
146 2UXD 3 C RIBOSOMAL PROTEIN S3 300852  
147 1N33 5 C 30S RIBOSOMAL PROTEIN S3 274  
148 1IBK 4 C 30S RIBOSOMAL PROTEIN S3 274  
149 3I9B 3 F 30S RIBOSOMAL PROTEIN S3 300852  
150 3I9D 3 F 30S ribosomal protein S3 300852  
151 3ZN7 3 C 30S RIBOSOMAL PROTEIN S3 300852  
152 3ZND 3 C 30S RIBOSOMAL PROTEIN S3 300852  
153 4EJ9 3 C 30S ribosomal protein S3 300852  
154 4EJA 3 C 30S ribosomal protein S3 300852  
155 1HNW 4 C 30S RIBOSOMAL PROTEIN S3 274  
156 3KNL 3 C 30S ribosomal protein S3 300852  
157 3KNN 3 C 30S ribosomal protein S3 300852  
158 1IBM 6 C 30S RIBOSOMAL PROTEIN S3 274  
159 3HUW 3 C 30S ribosomal protein S3 300852  
160 3HUY 3 C 30S ribosomal protein S3 300852  
161 3KNJ 3 C 30S ribosomal protein S3 300852  
162 3KIU 2 c 30S ribosomal protein S3 300852  
163 3KIX 2 c 30S ribosomal protein S3 300852  
164 1HNX 4 C 30S RIBOSOMAL PROTEIN S3 274  
165 1VY0 3 C 30S ribosomal protein S3 300852  
166 1VY2 3 C 30S ribosomal protein S3 300852  
167 4B8F 3 C 30S RIBOSOMAL PROTEIN S3 300852  
168 4B8H 3 C 30S RIBOSOMAL PROTEIN S3 300852  
169 1VXK 3 C 30S ribosomal protein S3 300852  
170 1VXM 3 C 30S ribosomal protein S3 300852  
171 3F1E 5 C 30S ribosomal protein S3 274  
172 3F1G 5 C 30S ribosomal protein S3 274  
173 2WRI 3 C 30S RIBOSOMAL PROTEIN S3 300852  
174 2WRK 3 C 30S RIBOSOMAL PROTEIN S3 300852  
175 4KWZ 3 C 30S ribosomal protein S3 300852  
176 4KX1 3 C 30S ribosomal protein S3 300852  
177 1VVX 3 C 30S ribosomal protein S3 300852  
178 1VVZ 3 C 30S ribosomal protein S3 300852  
179 2E5L 4 C 30S ribosomal protein S3 274  
180 2HHH 3 C 30S ribosomal protein S3 300852  
181 4OX9 3 C 30S ribosomal protein S3 300852  
182 2UXB 3 C RIBOSOMAL PROTEIN S3 300852  
183 1I96 3 C 30S RIBOSOMAL PROTEIN S3 274  
184 1N34 4 C 30S RIBOSOMAL PROTEIN S3 274  
185 2V46 3 C 30S RIBOSOMAL PROTEIN S3 300852  
186 2V48 3 C 30S RIBOSOMAL PROTEIN S3 300852  
187 3D5A 5 C 30S ribosomal protein S3 262724  
188 3D5C 5 C 30S ribosomal protein S3 262724  
189 1VVP 3 C 30S ribosomal protein S3 300852  
190 1VVR 3 C 30S ribosomal protein S3 300852  
191 4KVB 3 C 30S ribosomal protein S3 262724  
192 3V6U 3 C 30S ribosomal protein S3 300852  
193 3V6V 3 C 30S ribosomal protein S3 300852  
194 1N36 3 C 30S RIBOSOMAL PROTEIN S3 274  
195 2ZM6 3 C 30S ribosomal protein S3 274  
196 1VVT 3 C 30S ribosomal protein S3 300852  
197 1VVV 3 C 30S ribosomal protein S3 300852  
198 2F4V 4 C 30S ribosomal protein S3 274  
199 2WRN 3 C 30S RIBOSOMAL PROTEIN S3 300852  
200 2WRQ 3 C 30S RIBOSOMAL PROTEIN S3 300852  
201 1I97 3 C 30S RIBOSOMAL PROTEIN S3 274  
202 1I95 3 C 30S RIBOSOMAL PROTEIN S3 274  
203 3ZVO 3 C 30S RIBOSOMAL PROTEIN S3 300852  
204 2HGP 5 F 30S ribosomal protein S3 300852  
205 2QNH 6 d 30S ribosomal protein S3 262724  
206 2HGI 5 F 30S ribosomal protein S3 300852  
207 2HGR 6 F 30S ribosomal protein S3 300852  
208 2OW8 6 d 30S ribosomal protein S3 262724  
209 1YL4 5 F 30S ribosomal protein S3 300852  
210 2B64 6 C 30S ribosomal protein S3 300852  
211 2B9M 6 C 30S ribosomal protein S3 300852  
212 2B9O 6 C 30S ribosomal protein S3 300852  
213 2XUY 3 C 30S RIBOSOMAL PROTEIN S3 300852  
214 2XSY 3 C 30S RIBOSOMAL PROTEIN S3 300852  
215 1ML5 8 F 30S RIBOSOMAL PROTEIN S3 562  
216 1JGO 6 F 30S RIBOSOMAL PROTEIN S3 274  
217 1JGP 6 F 30S RIBOSOMAL PROTEIN S3 274  
218 1JGQ 6 F 30S RIBOSOMAL PROTEIN S3 274  
219 1GIX 6 F 30S RIBOSOMAL PROTEIN S3 274  
 
Sequence Clusters for the Sequence Entities in PDB 4JI8
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 252 29
95% 29 254 48
90% 29 254 51
70% 29 254 63
50% 45 369 34
40% 45 369 48
30% 45 374 67
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 255 27
95% 29 255 44
90% 29 255 47
70% 29 255 59
50% 39 363 42
40% 43 403 39
30% 43 403 53
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 17019
95% 29 262 36
90% 29 262 38
70% 39 375 24
50% 39 375 33
40% 39 375 47
30% 39 375 71
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 256 24
95% 29 256 42
90% 29 256 45
70% 29 256 57
50% 39 365 39
40% 39 365 53
30% 41 401 57
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 254 28
95% 29 254 49
90% 29 254 52
70% 29 254 64
50% 29 254 99
40% 29 254 124
30% 29 254 144
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 258 21
95% 31 263 35
90% 31 263 37
70% 31 263 48
50% 44 376 32
40% 44 376 45
30% 44 376 69
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 250 31
95% 29 255 46
90% 29 255 49
70% 29 255 61
50% 29 255 97
40% 29 255 122
30% 39 363 78
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 21 157 62
95% 29 249 51
90% 29 253 53
70% 29 253 65
50% 29 253 100
40% 29 253 126
30% 29 253 146
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 172 49
95% 26 221 64
90% 26 221 68
70% 26 221 81
50% 26 221 116
40% 26 221 144
30% 26 221 166
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 223 38
95% 27 223 63
90% 27 223 67
70% 27 223 80
50% 40 366 38
40% 40 366 52
30% 40 366 75
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 255 25
95% 29 256 39
90% 29 256 43
70% 29 256 55
50% 29 256 96
40% 39 363 55
30% 39 363 77
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 193 43
95% 29 254 47
90% 29 254 50
70% 29 254 62
50% 29 254 98
40% 29 254 123
30% 29 254 143
Entity #21: Chains: U - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 238 34
95% 29 238 55
90% 29 238 59
70% 29 238 71
50% 29 238 110
40% 29 238 133
30% 29 238 153
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 26 219 39
95% 26 219 66
90% 26 219 70
70% 26 219 83
50% 30 282 81
40% 30 282 101
30% 30 282 123
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 248 32
95% 29 256 40
90% 29 256 44
70% 29 256 56
50% 39 363 40
40% 39 364 54
30% 39 364 76
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 255 26
95% 29 255 43
90% 29 255 46
70% 29 255 58
50% 40 367 37
40% 40 367 51
30% 40 369 72
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 260 18
95% 36 266 34
90% 36 266 36
70% 36 266 47
50% 36 266 88
40% 36 266 112
30% 44 313 95
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 259 20
95% 30 260 37
90% 30 260 39
70% 30 260 51
50% 37 308 57
40% 37 309 74
30% 37 309 97
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 255 23
95% 30 255 41
90% 30 259 40
70% 30 259 52
50% 42 369 36
40% 43 371 49
30% 46 408 50
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 142 82
95% 29 255 45
90% 29 255 48
70% 29 255 60
50% 39 363 41
40% 39 363 56
30% 41 399 59
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.