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Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Sequence Clustering and Redundancy Reduction Results
4JI8
Cluster # 45 Members. Sequence cutoff: 100% Cluster size: 193 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4Y4O 34 1c, 2c 30S ribosomal protein S3 300852  
2 4W2F 3 AC, CC 30S Ribosomal Protein S3 300852  
3 4Y4P 34 1c, 2c 30S ribosomal protein S3 300852  
4 4W2G 3 AC, CC 30S Ribosomal Protein S3 300852  
5 4LFB 3 C ribosomal protein S3 300852  
6 1VY4 3 AC, CC 30S ribosomal protein S3 300852  
7 4W2I 3 AC, CC 30S Ribosomal Protein S3 300852  
8 1VY5 3 AC, CC 30S ribosomal protein S3 300852  
9 4WQF 36 BC, DC 30S ribosomal protein S3 300852  
10 4W2H 3 AC, CC 30S Ribosomal Protein S3 300852  
11 4WPO 36 BC, DC 30S ribosomal protein S3 300852  
12 4V8I 3 AC, CC 30S Ribosomal Protein S3 274  
13 4JI1 3 C RIBOSOMAL PROTEIN S3 300852  
14 4Z3S 34 1c, 2c 30S ribosomal protein S3 300852  
15 4Z3Q 34 1c, 2c 30S Ribosomal Protein S3 300852  
16 4DR6 3 C 30S ribosomal protein S3 300852  
17 4LF7 3 C ribosomal protein S3 300852  
18 4LF8 3 C ribosomal protein S3 300852  
19 4WSD 3 22, 2E 30S ribosomal protein S3 300852  
20 4WQU 36 BC, DC 30S ribosomal protein S3 300852  
21 2VQE 3 C 30S RIBOSOMAL PROTEIN S3 300852  
22 4Z8C 34 1c, 2c 30S ribosomal protein S3 300852  
23 2UUB 3 C 30S RIBOSOMAL PROTEIN S3 300852  
24 4DV6 3 C ribosomal protein S3 300852  
25 4DR5 3 C 30S ribosomal protein S3 300852  
26 4DR2 3 C 30S ribosomal protein S3 300852  
27 4WRO 7 22, 2E 30S ribosomal protein S3 300852  
28 4WQ1 3 22, 2E 30S ribosomal protein S3 300852  
29 4LF9 3 C ribosomal protein S3 300852  
30 4WQY 36 BC, DC 30S ribosomal protein S3 300852  
31 4DUY 3 C ribosomal protein S3 300852  
32 4DV7 3 C ribosomal protein S3 300852  
33 4WRA 3 22, 2E 30S ribosomal protein S3 300852  
34 4V8D 3 AF, CF 30S RIBOSOMAL PROTEIN S3 300852  
35 4DR3 3 C 30S ribosomal protein S3 300852  
36 4V90 3 AC 30S RIBOSOMAL PROTEIN S3 300852  
37 4JI3 3 C RIBOSOMAL PROTEIN S3 300852  
38 4WQR 3 22, 2E 30S ribosomal protein S3 300852  
39 4JI6 3 C RIBOSOMAL PROTEIN S3 300852  
40 4JI8 3 C RIBOSOMAL PROTEIN S3 300852  
41 2UXC 3 C RIBOSOMAL PROTEIN S3 300852  
42 4V9R 3 AC, CC 30S Ribosomal Protein S3 274  
43 4B3M 3 C 30S RIBOSOMAL PROTEIN S3 300852  
44 4LF4 3 C ribosomal protein S3 300852  
45 4LF6 3 C ribosomal protein S3 300852  
46 4JI7 3 C RIBOSOMAL PROTEIN S3 300852  
47 4WU1 3 22, 2E 30S ribosomal protein S3 300852  
48 4B3T 3 C 30S RIBOSOMAL PROTEIN S3 300852  
49 4WR6 3 22, 2E 30S ribosomal protein S3 300852  
50 4V8B 3 AF, CF 30S RIBOSOMAL PROTEIN S3 300852  
51 2VQF 3 C 30S RIBOSOMAL PROTEIN S3 300852  
52 2UUA 3 C 30S RIBOSOMAL PROTEIN S3 300852  
53 4V87 33 BF, CF 30S RIBOSOMAL PROTEIN S3 300852  
54 4V95 3 AC, CC 30S Ribosomal Protein S3 274  
55 1VY7 3 AC, CC 30S ribosomal protein S3 300852  
56 4B3R 3 C 30S RIBOSOMAL PROTEIN S3 300852  
57 4LNT 3 QC, XC 30S ribosomal protein S3 300852  
58 4DR1 3 C 30S ribosomal protein S3 300852  
59 4LFA 3 C ribosomal protein S3 300852  
60 4DV4 3 C ribosomal protein S3 300852  
61 4JI0 3 C ribosomal protein S3 300852  
62 4V9S 3 AC, CC 30S Ribosomal Protein S3 274  
63 4JI2 3 C RIBOSOMAL PROTEIN S3 300852  
64 4DR7 3 C 30S ribosomal protein S3 300852  
65 1J5E 3 C 30S RIBOSOMAL PROTEIN S3 274  
66 4DUZ 3 C ribosomal protein S3 300852  
67 4V8G 3 AC, CC 30S Ribosomal Protein S3 300852  
68 4DV3 3 C ribosomal protein S3 300852  
69 4DV5 3 C ribosomal protein S3 300852  
70 2UUC 3 C 30S RIBOSOMAL PROTEIN S3 300852  
71 4LFC 3 C ribosomal protein S3 300852  
72 1FJG 4 C 30S RIBOSOMAL PROTEIN S3 274  
73 3T1Y 3 C 30S ribosomal protein S3 300852  
74 4WZO 3 22, 2E 30S ribosomal protein S3 300852  
75 4JI4 3 C RIBOSOMAL PROTEIN S3 300852  
76 1VY6 3 AC, CC 30S ribosomal protein S3 300852  
77 1XMQ 5 C 30S Ribosomal Protein S3 274  
78 4DV0 3 C ribosomal protein S3 300852  
79 4V9B 3 AF, CF 30S RIBOSOMAL PROTEIN S3 300852  
80 4V6F 33 BF, CF 30S ribosomal protein S3 300852  
81 4V8F 33 BF, CF 30S RIBOSOMAL PROTEIN S3 300852  
82 4B3S 3 C 30S RIBOSOMAL PROTEIN S3 300852  
83 4DV2 3 C ribosomal protein S3 300852  
84 4DV1 3 C ribosomal protein S3 300852  
85 1N32 5 C 30S RIBOSOMAL PROTEIN S3 274  
86 1I94 3 C 30S RIBOSOMAL PROTEIN S3 274  
87 4V8H 3 AC, CC 30S Ribosomal Protein S3 300852  
88 4JI5 3 C RIBOSOMAL PROTEIN S3 300852  
89 4W2E 36 c 30S ribosomal protein S3 300852  
90 4V8C 33 CF, DF 30S RIBOSOMAL PROTEIN S3 300852  
91 4LF5 3 C ribosomal protein S3 300852  
92 4V9A 3 AF, CF 30S RIBOSOMAL PROTEIN S3 300852  
93 4V5J 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
94 4V7Y 3 AC, CC 30S ribosomal protein S3 300852  
95 4V8E 33 BF, DF 30S RIBOSOMAL PROTEIN S3 300852  
96 4DR4 3 C 30S ribosomal protein S3 300852  
97 4WZD 3 22, 2E 30S ribosomal protein S3 300852  
98 3OTO 3 C 30S RIBOSOMAL PROTEIN S3 300852  
99 2UU9 3 C 30S RIBOSOMAL PROTEIN S3 300852  
100 4V8Q 37 BC 30S RIBOSOMAL PROTEIN S3 300852  
101 1HR0 4 C 30S RIBOSOMAL PROTEIN S3 274  
102 4AQY 3 C 30S RIBOSOMAL PROTEIN S3 274  
103 4NXM 3 C ribosomal protein S3 300852  
104 4V5L 3 AC 30S RIBOSOMAL PROTEIN S3 300852  
105 4V7X 3 AC, CC 30S ribosomal protein S3 300852  
106 1IBL 6 C 30S RIBOSOMAL PROTEIN S3 274  
107 4V7W 3 AC, CC 30S ribosomal protein S3 300852  
108 4WT1 3 22, 2E 30S ribosomal protein S3 300852  
109 4Z3R 34 1c, 2c 30S ribosomal protein S3 300852  
110 4WT8 3 C 30S ribosomal protein S3 300852  
111 4NXN 3 C ribosomal protein S3 300852  
112 1XNR 5 C 16S Ribosomal protein S3 274  
113 4LT8 3 QC, XC 30S ribosomal protein S3 300852  
114 4V51 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
115 4V7L 3 AC, CC 30S ribosomal protein S3 300852  
116 4V5R 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
117 1HNZ 4 C 30S RIBOSOMAL PROTEIN S3 274  
118 1XNQ 5 C Ribosomal protein S3 274  
119 4V8A 33 CC, DC 30S ribosomal protein S3 300852  
120 4V5K 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
121 4V5Q 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
122 4V7J 2 Ac, Bc 30S ribosomal protein S3 300852  
123 4V5C 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
124 4V5E 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
125 4L47 3 QC, XC 30S ribosomal protein S3 300852  
126 4V5P 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
127 4V5D 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
128 4V7Z 3 AC, CC 30S ribosomal protein S3 300852  
129 4V8X 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
130 4V5S 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
131 1XMO 5 C 30S ribosomal protein S3 274  
132 3T1H 3 C 30S ribosomal protein S3 300852  
133 2UXD 3 C RIBOSOMAL PROTEIN S3 300852  
134 1N33 5 C 30S RIBOSOMAL PROTEIN S3 274  
135 1IBK 4 C 30S RIBOSOMAL PROTEIN S3 274  
136 4V6G 3 AF, CF 30S RIBOSOMAL PROTEIN S3 300852  
137 4V8N 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
138 4V97 3 AC, CC 30S ribosomal protein S3 300852  
139 1HNW 4 C 30S RIBOSOMAL PROTEIN S3 274  
140 4V7M 3 AC, CC 30S ribosomal protein S3 300852  
141 4WSM 3 22, 2E 30S ribosomal protein S3 300852  
142 4TUD 3 QC, XC 30S ribosomal protein S3 300852  
143 1IBM 6 C 30S RIBOSOMAL PROTEIN S3 274  
144 4V6A 3 AC, CC 30S ribosomal protein S3 300852  
145 4TUE 3 QC, XC 30S ribosomal protein S3 300852  
146 4TUA 3 QC, XC 30S ribosomal protein S3 300852  
147 4V7K 2 Ac, Bc 30S ribosomal protein S3 300852  
148 1HNX 4 C 30S RIBOSOMAL PROTEIN S3 274  
149 4TUC 3 QC, XC 30S ribosomal protein S3 300852  
150 4TUB 3 QC, XC 30S ribosomal protein S3 300852  
151 4P70 3 QC, XC 30S ribosomal protein S3 300852  
152 4V8U 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
153 4LSK 3 QC, XC 30S ribosomal protein S3 300852  
154 4P6F 3 QC, XC 30S ribosomal protein S3 300852  
155 4V67 5 AC, CC 30S ribosomal protein S3 274  
156 4V5F 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
157 1VVJ 3 QC, XC 30S ribosomal protein S3 300852  
158 4LFZ 3 QC, XC 30S ribosomal protein S3 300852  
159 2E5L 4 C 30S ribosomal protein S3 274  
160 2HHH 3 C 30S ribosomal protein S3 300852  
161 4OX9 3 C 30S ribosomal protein S3 300852  
162 2UXB 3 C RIBOSOMAL PROTEIN S3 300852  
163 1I96 3 C 30S RIBOSOMAL PROTEIN S3 274  
164 1N34 4 C 30S RIBOSOMAL PROTEIN S3 274  
165 4V5A 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
166 4V63 5 AC, CC 30S ribosomal protein S3 262724  
167 4L71 3 QC, XC 30S ribosomal protein S3 300852  
168 4KVB 3 C 30S ribosomal protein S3 262724  
169 4V8J 3 AC, CC 30S ribosomal protein S3 300852  
170 1N36 3 C 30S RIBOSOMAL PROTEIN S3 274  
171 2ZM6 3 C 30S ribosomal protein S3 274  
172 4LEL 3 QC, XC 30S ribosomal protein S3 300852  
173 2F4V 4 C 30S ribosomal protein S3 274  
174 4V5G 3 AC, CC 30S RIBOSOMAL PROTEIN S3 300852  
175 1I97 3 C 30S RIBOSOMAL PROTEIN S3 274  
176 1I95 3 C 30S RIBOSOMAL PROTEIN S3 274  
177 4V8O 3 AC 30S RIBOSOMAL PROTEIN S3 300852  
178 4V4Y 5 AF 30S ribosomal protein S3 300852  
179 4V4J 36 d 30S ribosomal protein S3 262724  
180 4V4X 5 AF 30S ribosomal protein S3 300852  
181 4V4Z 6 AF 30S ribosomal protein S3 300852  
182 4V4I 36 d 30S ribosomal protein S3 262724  
183 4V4P 38 BF 30S ribosomal protein S3 300852  
184 4V4R 6 AC 30S ribosomal protein S3 300852  
185 4V4S 6 AC 30S ribosomal protein S3 300852  
186 4V4T 6 AC 30S ribosomal protein S3 300852  
187 4V5N 3 AC 30S RIBOSOMAL PROTEIN S3 300852  
188 4V5M 3 AC 30S RIBOSOMAL PROTEIN S3 300852  
189 1ML5 8 F 30S RIBOSOMAL PROTEIN S3 562  
190 1JGO 6 F 30S RIBOSOMAL PROTEIN S3 274  
191 1JGP 6 F 30S RIBOSOMAL PROTEIN S3 274  
192 1JGQ 6 F 30S RIBOSOMAL PROTEIN S3 274  
193 4V42 6 AF 30S RIBOSOMAL PROTEIN S3 274  
 
Sequence Clusters for the Sequence Entities in PDB 4JI8
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 218 36
95% 43 219 51
90% 43 219 55
70% 43 219 66
50% 54 306 33
40% 54 306 43
30% 59 360 42
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 220 34
95% 43 220 47
90% 43 220 51
70% 43 220 61
50% 48 300 42
40% 55 361 30
30% 55 362 41
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 18423
95% 43 227 38
90% 43 227 42
70% 48 311 23
50% 48 312 32
40% 48 312 42
30% 48 312 57
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 221 32
95% 43 221 45
90% 43 221 49
70% 43 221 59
50% 48 305 38
40% 48 305 50
30% 53 361 46
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 219 35
95% 43 219 52
90% 43 219 56
70% 43 220 64
50% 43 220 92
40% 43 220 113
30% 43 220 126
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 223 29
95% 45 228 26
90% 45 228 31
70% 45 228 43
50% 53 313 29
40% 53 314 40
30% 53 314 55
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 215 37
95% 43 220 49
90% 43 220 53
70% 43 220 63
50% 43 220 91
40% 43 221 112
30% 48 303 70
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 134 59
95% 43 214 56
90% 43 218 58
70% 43 218 69
50% 43 218 94
40% 43 218 116
30% 43 218 128
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 39 145 55
95% 40 194 64
90% 40 194 66
70% 40 194 79
50% 40 194 111
40% 40 194 130
30% 40 194 149
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 44 223 27
95% 44 223 41
90% 44 223 46
70% 44 223 56
50% 49 303 37
40% 49 303 48
30% 49 303 67
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 220 30
95% 43 221 42
90% 43 221 47
70% 43 221 57
50% 48 299 41
40% 48 300 51
30% 48 300 69
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 42 170 49
95% 43 219 50
90% 43 219 54
70% 43 219 65
50% 43 219 93
40% 43 219 114
30% 43 219 127
Entity #21: Chains: U - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 210 40
95% 43 210 59
90% 43 210 62
70% 43 210 73
50% 43 210 98
40% 43 210 120
30% 43 210 133
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 193 45
95% 40 193 65
90% 40 193 67
70% 40 193 80
50% 41 236 78
40% 41 236 99
30% 41 236 119
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 213 38
95% 43 221 43
90% 43 221 48
70% 43 221 58
50% 48 300 39
40% 48 301 49
30% 48 301 68
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 220 33
95% 43 220 46
90% 43 220 50
70% 43 220 60
50% 49 304 36
40% 49 304 47
30% 49 306 65
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 44 225 24
95% 50 231 24
90% 50 231 29
70% 50 231 40
50% 50 231 82
40% 50 231 104
30% 56 270 78
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 44 224 26
95% 44 225 40
90% 44 225 44
70% 44 225 54
50% 49 268 51
40% 49 269 61
30% 49 269 81
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 44 220 31
95% 44 220 44
90% 44 224 45
70% 44 224 55
50% 51 306 34
40% 52 308 44
30% 58 365 40
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 39 130 75
95% 43 220 48
90% 43 220 52
70% 43 220 62
50% 48 300 43
40% 48 300 52
30% 53 356 48
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.