Sequence Similarity Clusters for the Entities in PDB 4JI8

Entity #1 | Chains: A
16S rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 254 36
95 % 56 255 49
90 % 56 255 54
70 % 56 255 64
50 % 74 366 28
40 % 74 366 38
30 % 79 440 36
Entity #11 | Chains: K
RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 256 34
95 % 56 256 45
90 % 56 256 50
70 % 56 256 59
50 % 68 360 35
40 % 75 442 20
30 % 75 443 33
Entity #12 | Chains: L
RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 20720
95 % 56 263 36
90 % 56 263 41
70 % 68 371 21
50 % 68 372 27
40 % 68 372 37
30 % 68 372 57
Entity #13 | Chains: M
RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 257 32
95 % 56 257 43
90 % 56 257 48
70 % 56 257 57
50 % 68 365 32
40 % 68 365 44
30 % 73 441 39
Entity #14 | Chains: N
RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 255 35
95 % 56 255 50
90 % 56 255 55
70 % 56 256 62
50 % 56 256 88
40 % 56 256 108
30 % 56 256 120
Entity #15 | Chains: O
RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 259 29
95 % 58 264 35
90 % 58 264 40
70 % 58 264 50
50 % 73 373 26
40 % 73 374 36
30 % 73 374 56
Entity #16 | Chains: P
RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 251 37
95 % 56 256 47
90 % 56 256 52
70 % 56 256 61
50 % 56 256 87
40 % 56 257 107
30 % 68 363 63
Entity #17 | Chains: Q
RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 48 163 58
95 % 56 250 51
90 % 56 254 56
70 % 56 254 66
50 % 56 254 90
40 % 56 254 112
30 % 56 254 124
Entity #18 | Chains: R
RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 49 170 57
95 % 50 221 64
90 % 50 221 69
70 % 50 221 79
50 % 50 221 111
40 % 50 221 132
30 % 50 221 143
Entity #19 | Chains: S
RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 259 27
95 % 57 259 38
90 % 57 259 44
70 % 57 259 53
50 % 69 363 31
40 % 69 363 42
30 % 69 363 59
Entity #2 | Chains: B
RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 256 30
95 % 56 257 39
90 % 56 257 45
70 % 56 257 54
50 % 68 359 34
40 % 68 360 45
30 % 68 360 61
Entity #20 | Chains: T
RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 204 48
95 % 56 255 48
90 % 56 255 53
70 % 56 255 63
50 % 56 255 89
40 % 56 255 111
30 % 56 255 123
Entity #21 | Chains: U
RIBOSOMAL PROTEIN THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 246 39
95 % 56 246 54
90 % 56 246 59
70 % 56 246 69
50 % 56 246 96
40 % 56 246 119
30 % 56 246 133
Entity #3 | Chains: C
RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 50 220 45
95 % 50 220 65
90 % 50 220 70
70 % 50 220 80
50 % 52 280 77
40 % 52 280 99
30 % 52 280 112
Entity #4 | Chains: D
RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 249 38
95 % 56 257 40
90 % 56 257 46
70 % 56 257 55
50 % 68 360 33
40 % 68 361 43
30 % 68 361 60
Entity #5 | Chains: E
RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 256 33
95 % 56 256 44
90 % 56 256 49
70 % 56 256 58
50 % 69 364 30
40 % 69 364 41
30 % 69 366 58
Entity #6 | Chains: F
RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 261 25
95 % 63 267 34
90 % 63 267 37
70 % 63 267 46
50 % 63 267 84
40 % 63 267 103
30 % 75 313 82
Entity #7 | Chains: G
RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 260 26
95 % 57 261 37
90 % 57 261 42
70 % 57 261 51
50 % 68 313 56
40 % 68 314 74
30 % 68 314 95
Entity #8 | Chains: H
RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 256 31
95 % 57 256 42
90 % 57 260 43
70 % 57 260 52
50 % 71 366 29
40 % 72 368 39
30 % 78 447 31
Entity #9 | Chains: I
RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 52 165 73
95 % 56 256 46
90 % 56 256 51
70 % 56 256 60
50 % 68 360 36
40 % 68 360 46
30 % 73 437 40

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4Y4O 34 1c, 2c 30S ribosomal protein S3 274
2 5J8B 36 c 30S ribosomal protein S3 274
3 4W2F 3 AC, CC 30S Ribosomal Protein S3 274
4 4Y4P 34 1c, 2c 30S ribosomal protein S3 274
5 5J4B 34 1c, 2c 30S ribosomal protein S3 274
6 4W2G 3 AC, CC 30S Ribosomal Protein S3 274
7 4LFB 3 C ribosomal protein S3 274
8 1VY4 3 AC, CC 30S ribosomal protein S3 274
9 4W2I 3 AC, CC 30S Ribosomal Protein S3 274
10 1VY5 3 AC, CC 30S ribosomal protein S3 274
11 5HCQ 34 1c, 2c 30S ribosomal protein S3 274
12 4WQF 36 BC, DC 30S ribosomal protein S3 274
13 4W2H 3 AC, CC 30S Ribosomal Protein S3 274
14 4WPO 36 BC, DC 30S ribosomal protein S3 274
15 4V8I 3 AC, CC 30S Ribosomal Protein S3 274
16 4JI1 3 C RIBOSOMAL PROTEIN S3 274
17 4Z3S 34 1c, 2c 30S ribosomal protein S3 274
18 5DOY 34 1c, 2c 30S Ribosomal Protein S3 274
19 5HD1 34 1c, 2c 30S ribosomal protein S3 274
20 4DR6 3 C 30S ribosomal protein S3 274
21 4LF7 3 C ribosomal protein S3 274
22 4LF8 3 C ribosomal protein S3 274
23 4WSD 3 22, 2E 30S ribosomal protein S3 274
24 4WQU 36 BC, DC 30S ribosomal protein S3 274
25 5E81 3 22, 2E 30S ribosomal protein S3 274
26 2VQE 3 C 30S RIBOSOMAL PROTEIN S3 274
27 4Z8C 34 1c, 2c 30S ribosomal protein S3 274
28 5HCR 34 1c, 2c 30S ribosomal protein S3 274
29 2UUB 3 C 30S RIBOSOMAL PROTEIN S3 274
30 4DV6 3 C ribosomal protein S3 274
31 5IBB 3 22, 2E 30S ribosomal protein S3 274
32 4DR5 3 C 30S ribosomal protein S3 274
33 5J4C 34 1c, 2c 30S ribosomal protein S3 274
34 4DR2 3 C 30S ribosomal protein S3 274
35 4WRO 7 22, 2E 30S ribosomal protein S3 274
36 4WQ1 3 22, 2E 30S ribosomal protein S3 274
37 4LF9 3 C ribosomal protein S3 274
38 4WQY 36 BC, DC 30S ribosomal protein S3 274
39 4DUY 3 C ribosomal protein S3 274
40 4DV7 3 C ribosomal protein S3 274
41 4WRA 3 22, 2E 30S ribosomal protein S3 274
42 5IB7 3 22, 2E 30S ribosomal protein S3 274
43 5HCP 34 1c, 2c 30S ribosomal protein S3 274
44 4V8D 3 AF, CF 30S RIBOSOMAL PROTEIN S3 274
45 4DR3 3 C 30S ribosomal protein S3 274
46 4V90 3 AC 30S RIBOSOMAL PROTEIN S3 274
47 4JI3 3 C RIBOSOMAL PROTEIN S3 274
48 4WQR 3 22, 2E 30S ribosomal protein S3 274
49 4JI6 3 C RIBOSOMAL PROTEIN S3 274
50 4JI8 3 C RIBOSOMAL PROTEIN S3 274
51 2UXC 3 C RIBOSOMAL PROTEIN S3 274
52 5IB8 3 22, 2E 30S ribosomal protein S3 274
53 4V9R 3 AC, CC 30S Ribosomal Protein S3 274
54 4B3M 3 C 30S RIBOSOMAL PROTEIN S3 274
55 5EL6 3 22, 2E 30S ribosomal protein S3 274
56 5EL7 3 22, 2E 30S ribosomal protein S3 274
57 4LF4 3 C ribosomal protein S3 274
58 4LF6 3 C ribosomal protein S3 274
59 4JI7 3 C RIBOSOMAL PROTEIN S3 274
60 4WU1 3 22, 2E 30S ribosomal protein S3 274
61 5EL4 3 22, 2E 30S ribosomal protein S3 274
62 4B3T 3 C 30S RIBOSOMAL PROTEIN S3 274
63 4WR6 3 22, 2E 30S ribosomal protein S3 274
64 4V8B 3 AF, CF 30S RIBOSOMAL PROTEIN S3 274
65 5HAU 36 1c, 2c 30S ribosomal protein S3 274
66 2VQF 3 C 30S RIBOSOMAL PROTEIN S3 274
67 2UUA 3 C 30S RIBOSOMAL PROTEIN S3 274
68 4V87 33 BF, CF 30S RIBOSOMAL PROTEIN S3 274
69 4V95 3 AC, CC 30S Ribosomal Protein S3 274
70 1VY7 3 AC, CC 30S ribosomal protein S3 274
71 5E7K 3 22, 2E 30S ribosomal protein S3 274
72 5EL5 3 22, 2E 30S ribosomal protein S3 274
73 4B3R 3 C 30S RIBOSOMAL PROTEIN S3 274
74 4LNT 3 QC, XC 30S ribosomal protein S3 274
75 4DR1 3 C 30S ribosomal protein S3 274
76 4LFA 3 C ribosomal protein S3 274
77 4DV4 3 C ribosomal protein S3 274
78 4YZV 3 QC, XC 30S ribosomal protein S3 274
79 4JI0 3 C ribosomal protein S3 274
80 4V9S 3 AC, CC 30S Ribosomal Protein S3 274
81 4JI2 3 C RIBOSOMAL PROTEIN S3 274
82 4DR7 3 C 30S ribosomal protein S3 274
83 1J5E 3 C 30S RIBOSOMAL PROTEIN S3 274
84 4DUZ 3 C ribosomal protein S3 274
85 4V8G 3 AC, CC 30S Ribosomal Protein S3 274
86 4DV3 3 C ribosomal protein S3 274
87 4DV5 3 C ribosomal protein S3 274
88 2UUC 3 C 30S RIBOSOMAL PROTEIN S3 274
89 4LFC 3 C ribosomal protein S3 274
90 1FJG 4 C 30S RIBOSOMAL PROTEIN S3 274
91 3T1Y 3 C 30S ribosomal protein S3 274
92 4WZO 3 22, 2E 30S ribosomal protein S3 274
93 4JI4 3 C RIBOSOMAL PROTEIN S3 274
94 1VY6 3 AC, CC 30S ribosomal protein S3 274
95 1XMQ 5 C 30S Ribosomal Protein S3 274
96 4DV0 3 C ribosomal protein S3 274
97 4V9B 3 AF, CF 30S RIBOSOMAL PROTEIN S3 274
98 4V6F 33 BF, CF 30S ribosomal protein S3 274
99 4V8F 33 BF, CF 30S RIBOSOMAL PROTEIN S3 274
100 4B3S 3 C 30S RIBOSOMAL PROTEIN S3 274
101 4DV2 3 C ribosomal protein S3 274
102 4DV1 3 C ribosomal protein S3 274
103 1N32 5 C 30S RIBOSOMAL PROTEIN S3 274
104 1I94 3 C 30S RIBOSOMAL PROTEIN S3 274
105 4V8H 3 AC, CC 30S Ribosomal Protein S3 274
106 4JI5 3 C RIBOSOMAL PROTEIN S3 274
107 4W2E 36 c 30S ribosomal protein S3 274
108 4V8C 33 CF, DF 30S RIBOSOMAL PROTEIN S3 274
109 5BR8 3 C 30S ribosomal protein S3 274
110 4LF5 3 C ribosomal protein S3 274
111 5J4D 37 LA, QC 30S ribosomal protein S3 274
112 4V9A 3 AF, CF 30S RIBOSOMAL PROTEIN S3 274
113 4V5J 3 AC, CC 30S RIBOSOMAL PROTEIN S3 274
114 4V7Y 3 AC, CC 30S ribosomal protein S3 274
115 4V8E 33 BF, DF 30S RIBOSOMAL PROTEIN S3 274
116 4DR4 3 C 30S ribosomal protein S3 274
117 4WZD 3 22, 2E 30S ribosomal protein S3 274
118 3OTO 3 C 30S RIBOSOMAL PROTEIN S3 274
119 2UU9 3 C 30S RIBOSOMAL PROTEIN S3 274
120 4V8Q 37 BC 30S RIBOSOMAL PROTEIN S3 274
121 1HR0 4 C 30S RIBOSOMAL PROTEIN S3 274
122 4AQY 3 C 30S RIBOSOMAL PROTEIN S3 274
123 4W4G 3 QC, XC 30S ribosomal protein S3 274
124 4NXM 3 C ribosomal protein S3 274
125 4V5L 3 AC 30S RIBOSOMAL PROTEIN S3 274
126 4YPB 3 QC, XC 30S ribosomal protein S3 274
127 4V7X 3 AC, CC 30S ribosomal protein S3 274
128 1IBL 6 C 30S RIBOSOMAL PROTEIN S3 274
129 4V7W 3 AC, CC 30S ribosomal protein S3 274
130 4WT1 3 22, 2E 30S ribosomal protein S3 274
131 4WT8 3 AC 30S ribosomal protein S3 274
132 5DOX 34 1c, 2c 30S ribosomal protein S3 274
133 4NXN 3 C ribosomal protein S3 274
134 1XNR 5 C 16S Ribosomal protein S3 274
135 4LT8 3 QC, XC 30S ribosomal protein S3 274
136 4V51 3 AC, CC 30S RIBOSOMAL PROTEIN S3 274
137 4V7L 3 AC, CC 30S ribosomal protein S3 274
138 4V5R 3 AC, CC 30S RIBOSOMAL PROTEIN S3 274
139 1HNZ 4 C 30S RIBOSOMAL PROTEIN S3 274
140 1XNQ 5 C Ribosomal protein S3 274
141 4V8A 33 CC, DC 30S ribosomal protein S3 274
142 4V5K 3 AC, CC 30S RIBOSOMAL PROTEIN S3 274
143 4V5Q 3 AC, CC 30S RIBOSOMAL PROTEIN S3 274
144 4V7J 2 Ac, Bc 30S ribosomal protein S3 274
145 4V5C 3 AC, CC 30S RIBOSOMAL PROTEIN S3 274
146 4V5E 3 AC, CC 30S RIBOSOMAL PROTEIN S3 274
147 4L47 3 QC, XC 30S ribosomal protein S3 274
148 4V5P 3 AC, CC 30S RIBOSOMAL PROTEIN S3 274
149 4ZSN 3 QC, XC 30S ribosomal protein S3 274
150 4V5D 3 AC, CC 30S RIBOSOMAL PROTEIN S3 274
151 4V7Z 3 AC, CC 30S ribosomal protein S3 274
152 4V8X 3 AC, CC 30S RIBOSOMAL PROTEIN S3 274
153 4V5S 3 AC, CC 30S RIBOSOMAL PROTEIN S3 274
154 1XMO 5 C 30S ribosomal protein S3 274
155 3T1H 3 C 30S ribosomal protein S3 274
156 2UXD 3 C RIBOSOMAL PROTEIN S3 274
157 1N33 5 C 30S RIBOSOMAL PROTEIN S3 274
158 1IBK 4 C 30S RIBOSOMAL PROTEIN S3 274
159 4V6G 3 AF, CF 30S RIBOSOMAL PROTEIN S3 274
160 4V8N 3 AC, CC 30S RIBOSOMAL PROTEIN S3 274
161 4V97 3 AC, CC 30S ribosomal protein S3 274
162 1HNW 4 C 30S RIBOSOMAL PROTEIN S3 274
163 4V7M 3 AC, CC 30S ribosomal protein S3 274
164 4WSM 3 22, 2E 30S ribosomal protein S3 274
165 4TUD 3 QC, XC 30S ribosomal protein S3 274
166 1IBM 6 C 30S RIBOSOMAL PROTEIN S3 274
167 4V6A 3 AC, CC 30S ribosomal protein S3 274
168 4TUE 3 QC, XC 30S ribosomal protein S3 274
169 4TUA 3 QC, XC 30S ribosomal protein S3 274
170 4V7K 2 Ac, Bc 30S ribosomal protein S3 274
171 4YY3 3 C 30S ribosomal protein S3 274
172 1HNX 4 C 30S RIBOSOMAL PROTEIN S3 274
173 4TUC 3 QC, XC 30S ribosomal protein S3 274
174 4TUB 3 QC, XC 30S ribosomal protein S3 274
175 4P70 3 QC, XC 30S ribosomal protein S3 274
176 4V8U 3 AC, CC 30S RIBOSOMAL PROTEIN S3 274
177 4LSK 3 QC, XC 30S ribosomal protein S3 274
178 4P6F 3 QC, XC 30S ribosomal protein S3 274
179 4V67 5 AC, CC 30S ribosomal protein S3 274
180 4V5F 3 AC, CC 30S RIBOSOMAL PROTEIN S3 274
181 1VVJ 3 QC, XC 30S ribosomal protein S3 274
182 4LFZ 3 QC, XC 30S ribosomal protein S3 274
183 2E5L 4 C 30S ribosomal protein S3 274
184 2HHH 3 C 30S ribosomal protein S3 274
185 4OX9 3 C 30S ribosomal protein S3 274
186 2UXB 3 C RIBOSOMAL PROTEIN S3 274
187 1I96 3 C 30S RIBOSOMAL PROTEIN S3 274
188 1N34 4 C 30S RIBOSOMAL PROTEIN S3 274
189 4V5A 3 AC, CC 30S RIBOSOMAL PROTEIN S3 274
190 4V63 5 AC, CC 30S ribosomal protein S3 274
191 4L71 3 QC, XC 30S ribosomal protein S3 274
192 4KVB 3 C 30S ribosomal protein S3 274
193 4V8J 3 AC, CC 30S ribosomal protein S3 274
194 1N36 3 C 30S RIBOSOMAL PROTEIN S3 274
195 2ZM6 3 C 30S ribosomal protein S3 274
196 5D8B 30 DA, ZB 30S ribosomal protein S3 274
197 4LEL 3 QC, XC 30S ribosomal protein S3 274
198 2F4V 4 C 30S ribosomal protein S3 274
199 4V5G 3 AC, CC 30S RIBOSOMAL PROTEIN S3 274
200 1I97 3 C 30S RIBOSOMAL PROTEIN S3 274
201 1I95 3 C 30S RIBOSOMAL PROTEIN S3 274
202 4V8O 3 AC 30S RIBOSOMAL PROTEIN S3 274
203 4V4Y 5 AF 30S ribosomal protein S3 274
204 4V4J 36 d 30S ribosomal protein S3 274
205 4V4X 5 AF 30S ribosomal protein S3 274
206 4V4Z 6 AF 30S ribosomal protein S3 274
207 4V4I 36 d 30S ribosomal protein S3 274
208 4V4P 38 BF 30S ribosomal protein S3 274
209 4V4R 6 AC 30S ribosomal protein S3 274
210 4V4S 6 AC 30S ribosomal protein S3 274
211 4V4T 6 AC 30S ribosomal protein S3 274
212 5IMQ 10 G 30S ribosomal protein S3 274
213 5IMR 3 G 30S ribosomal protein S3 274
214 4V5N 3 AC 30S RIBOSOMAL PROTEIN S3 274
215 4V5M 3 AC 30S RIBOSOMAL PROTEIN S3 274
216 1ML5 8 F 30S RIBOSOMAL PROTEIN S3 562
217 1JGO 6 F 30S RIBOSOMAL PROTEIN S3 274
218 1JGP 6 F 30S RIBOSOMAL PROTEIN S3 274
219 1JGQ 6 F 30S RIBOSOMAL PROTEIN S3 274
220 4V42 6 AF 30S RIBOSOMAL PROTEIN S3 274