Sequence Similarity Clusters for the Entities in PDB 4JI8

Entity #1 | Chains: A
16S rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 237 25
95 % 47 238 38
90 % 47 238 43
70 % 47 238 53
50 % 59 330 30
40 % 59 330 40
30 % 64 396 41
Entity #11 | Chains: K
RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 239 23
95 % 47 239 34
90 % 47 239 39
70 % 47 239 48
50 % 53 324 38
40 % 60 397 27
30 % 60 398 39
Entity #12 | Chains: L
RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 19424
95 % 47 246 22
90 % 47 246 27
70 % 53 335 23
50 % 53 336 29
40 % 53 336 39
30 % 53 336 56
Entity #13 | Chains: M
RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 240 20
95 % 47 240 32
90 % 47 240 37
70 % 47 240 46
50 % 53 329 35
40 % 53 329 46
30 % 58 397 46
Entity #14 | Chains: N
RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 238 24
95 % 47 238 39
90 % 47 238 44
70 % 47 239 51
50 % 47 239 82
40 % 47 239 107
30 % 47 239 123
Entity #15 | Chains: O
RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 242 16
95 % 49 247 21
90 % 49 247 26
70 % 49 247 37
50 % 58 337 27
40 % 58 338 38
30 % 58 338 54
Entity #16 | Chains: P
RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 234 26
95 % 47 239 36
90 % 47 239 41
70 % 47 239 50
50 % 47 239 81
40 % 47 240 106
30 % 53 327 64
Entity #17 | Chains: Q
RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 39 149 57
95 % 47 233 40
90 % 47 237 45
70 % 47 237 54
50 % 47 237 87
40 % 47 237 113
30 % 47 237 128
Entity #18 | Chains: R
RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 156 56
95 % 41 205 63
90 % 41 205 66
70 % 41 205 75
50 % 41 205 109
40 % 41 205 129
30 % 41 205 145
Entity #19 | Chains: S
RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 48 242 15
95 % 48 242 26
90 % 48 242 31
70 % 48 242 42
50 % 54 327 34
40 % 54 327 44
30 % 54 327 60
Entity #2 | Chains: B
RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 239 17
95 % 47 240 27
90 % 47 240 33
70 % 47 240 43
50 % 53 323 37
40 % 53 324 47
30 % 53 324 63
Entity #20 | Chains: T
RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 46 188 48
95 % 47 238 37
90 % 47 238 42
70 % 47 238 52
50 % 47 238 83
40 % 47 238 109
30 % 47 238 125
Entity #21 | Chains: U
RIBOSOMAL PROTEIN THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 229 39
95 % 47 229 54
90 % 47 229 58
70 % 47 229 69
50 % 47 229 96
40 % 47 229 118
30 % 47 229 132
Entity #3 | Chains: C
RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 204 43
95 % 41 204 64
90 % 41 204 67
70 % 41 204 76
50 % 43 252 68
40 % 43 252 93
30 % 43 252 110
Entity #4 | Chains: D
RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 232 27
95 % 47 240 28
90 % 47 240 34
70 % 47 240 44
50 % 53 324 36
40 % 53 325 45
30 % 53 325 62
Entity #5 | Chains: E
RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 239 22
95 % 47 239 33
90 % 47 239 38
70 % 47 239 47
50 % 54 328 33
40 % 54 328 43
30 % 54 330 59
Entity #6 | Chains: F
RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 48 244 13
95 % 54 250 20
90 % 54 250 25
70 % 54 250 35
50 % 54 250 70
40 % 54 250 94
30 % 60 289 80
Entity #7 | Chains: G
RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 48 243 14
95 % 48 244 25
90 % 48 244 29
70 % 48 244 40
50 % 53 289 50
40 % 53 290 62
30 % 53 290 83
Entity #8 | Chains: H
RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 48 239 19
95 % 48 239 31
90 % 48 243 30
70 % 48 243 41
50 % 56 330 31
40 % 57 332 41
30 % 63 401 37
Entity #9 | Chains: I
RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 43 149 70
95 % 47 239 35
90 % 47 239 40
70 % 47 239 49
50 % 53 324 39
40 % 53 324 49
30 % 58 392 47

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4Y4O 52 1u, 2u 30S ribosomal protein Thx 274
2 4W2F 21 AU, CU 30S Ribosomal Protein THX 274
3 4Y4P 52 1u, 2u 30S ribosomal protein Thx 274
4 5FDV 53 1u, 2u 30S ribosomal protein Thx 274
5 4W2G 21 AU, CU 30S Ribosomal Protein THX 274
6 4LFB 21 U ribosomal protein THX 274
7 1VY4 21 AU, CU 30S ribosomal protein Thx 274
8 5FDU 52 1u, 2u 30S ribosomal protein Thx 274
9 4W2I 21 AU, CU 30S Ribosomal Protein THX 274
10 1VY5 21 AU, CU 30S ribosomal protein Thx 274
11 4WQF 54 BU, DU 30S ribosomal protein Thx 274
12 4W2H 21 AU, CU 30S Ribosomal Protein THX 274
13 4WPO 54 BU, DU 30S ribosomal protein Thx 274
14 4V8I 21 AU, CU 30S Ribosomal Protein THX 274
15 4JI1 21 U RIBOSOMAL PROTEIN THX 274
16 4Z3S 52 1u, 2u 30S ribosomal protein Thx 274
17 5DOY 52 1u, 2u 30S Ribosomal Protein THX 274
18 4DR6 21 U 30S ribosomal protein THX 274
19 4LF7 21 U ribosomal protein THX 274
20 4LF8 21 U ribosomal protein THX 274
21 4WSD 21 1B, 1F 30S ribosomal protein Thx 274
22 4WQU 54 BU, DU 30S ribosomal protein Thx 274
23 5E81 21 1B, 1F 30S ribosomal protein Thx 274
24 2VQE 21 U 30S RIBOSOMAL PROTEIN THX 274
25 4Z8C 52 1u, 2u 30S ribosomal protein Thx 274
26 2UUB 21 U 30S RIBOSOMAL PROTEIN THX 274
27 4DV6 21 U ribosomal protein THX 274
28 4JYA 21 U 30S ribosomal protein THX 274
29 4DR5 21 U 30S ribosomal protein THX 274
30 4KHP 21 U 30S Ribosomal protein THX 274
31 4DR2 21 U 30S ribosomal protein THX 274
32 4WRO 25 1F 30S ribosomal protein Thx 274
33 4WQ1 21 1B, 1F 30S ribosomal protein Thx 274
34 4LF9 21 U ribosomal protein THX 274
35 4WQY 54 BU, DU 30S ribosomal protein Thx 274
36 4DUY 21 U ribosomal protein THX 274
37 4DV7 21 U ribosomal protein THX 274
38 4WRA 21 1B, 1F 30S ribosomal protein Thx 274
39 4X64 21 U 30S ribosomal protein Thx 274
40 4V9H 24 AU 30S ribosomal protein THX 274
41 4V8D 21 AX, CX 30S RIBOSOMAL PROTEIN THX 562
42 4DR3 21 U 30S ribosomal protein THX 274
43 4V90 21 AU 30S RIBOSOMAL PROTEIN THX 274
44 4JI3 21 U RIBOSOMAL PROTEIN THX 274
45 4WQR 21 1B, 1F 30S ribosomal protein Thx 274
46 4JI6 21 U RIBOSOMAL PROTEIN THX 274
47 4JI8 21 U RIBOSOMAL PROTEIN THX 274
48 2UXC 21 U RIBOSOMAL PROTEIN THX 274
49 4V9R 21 AU, CU 30S Ribosomal Protein THX 274
50 4B3M 21 V 30S RIBOSOMAL PROTEIN THX 274
51 5EL6 21 1B, 1F 30S ribosomal protein Thx 274
52 5EL7 21 1B, 1F 30S ribosomal protein Thx 274
53 4LF4 21 U ribosomal protein THX 274
54 4LF6 21 U ribosomal protein THX 274
55 4JI7 21 U RIBOSOMAL PROTEIN THX 274
56 4WU1 21 1B, 1F 30S ribosomal protein Thx 274
57 5EL4 21 1B, 1F 30S ribosomal protein Thx 274
58 4B3T 21 V 30S RIBOSOMAL PROTEIN THX 274
59 4WR6 21 1B, 1F 30S ribosomal protein THX 274
60 4V8B 21 AX, CX 30S RIBOSOMAL PROTEIN THX 274
61 2VQF 21 U 30S RIBOSOMAL PROTEIN THX 274
62 2UUA 21 U 30S RIBOSOMAL PROTEIN THX 274
63 4V87 51 BX, CX 30S RIBOSOMAL PROTEIN THX 562
64 4V95 21 AU, CU 30S Ribosomal Protein THX 274
65 1VY7 21 AU, CU 30S ribosomal protein Thx 274
66 5E7K 21 1B, 1F 30S ribosomal protein Thx 274
67 5EL5 21 1B, 1F 30S ribosomal protein Thx 274
68 4B3R 21 V 30S RIBOSOMAL PROTEIN THX 274
69 4LNT 21 QU, XU 30S ribosomal protein S21 274
70 4DR1 21 U 30S ribosomal protein THX 274
71 4LFA 21 U ribosomal protein THX 274
72 4DV4 21 U ribosomal protein THX 274
73 4YZV 21 QU, XU 30S ribosomal protein Thx 274
74 4JI0 21 U ribosomal protein THX 274
75 4V9S 21 AU, CU 30S Ribosomal Protein THX 274
76 4JI2 21 U RIBOSOMAL PROTEIN THX 274
77 4JV5 21 U 30S ribosomal protein THX 274
78 4DR7 21 U 30S ribosomal protein THX 274
79 1J5E 21 V 30S RIBOSOMAL PROTEIN THX 274
80 4GKK 21 V 30S ribosomal protein Thx 274
81 4DUZ 21 U ribosomal protein THX 274
82 4X65 21 U 30S ribosomal protein Thx 274
83 4V8G 21 AU, CU 30S Ribosomal Protein THX 274
84 4GKJ 21 V 30S ribosomal protein Thx 274
85 4DV3 21 U ribosomal protein THX 274
86 4DV5 21 U ribosomal protein THX 274
87 2UUC 21 U 30S RIBOSOMAL PROTEIN THX 274
88 4LFC 21 U ribosomal protein THX 274
89 1FJG 22 V 30S RIBOSOMAL PROTEIN THX 274
90 3T1Y 21 V 30S ribosomal protein Thx 274
91 4WZO 21 1B, 1F 30S ribosomal protein Thx 274
92 4JI4 21 U RIBOSOMAL PROTEIN THX 274
93 1VY6 21 AU, CU 30S ribosomal protein Thx 274
94 1XMQ 23 V 30S Ribosomal Protein Thx 274
95 4DV0 21 U ribosomal protein THX 274
96 4V9B 21 AX, CX 30S RIBOSOMAL PROTEIN THX 274
97 4V6F 51 BX, CX 30S ribosomal protein Thx 274
98 4X62 21 U 30S ribosomal protein Thx 274
99 4V8F 51 BX, CX 30S RIBOSOMAL PROTEIN THX 562
100 4B3S 21 V 30S RIBOSOMAL PROTEIN THX 274
101 4DV2 21 U ribosomal protein THX 274
102 4DV1 21 U ribosomal protein THX 274
103 1N32 23 V 30S RIBOSOMAL PROTEIN THX 274
104 5F8K 52 1u, 2u 30S ribosomal protein Thx 274
105 1I94 21 U 30S RIBOSOMAL PROTEIN THX 274
106 4V8H 21 AU, CU 30S Ribosomal Protein THX 274
107 4JI5 21 U RIBOSOMAL PROTEIN THX 274
108 4K0K 21 U 30S ribosomal protein THX 32630
109 4W2E 54 u 30S ribosomal protein Thx 274
110 4V8C 51 CX, DX 30S RIBOSOMAL PROTEIN THX 562
111 5BR8 21 U 30S ribosomal protein Thx 274
112 4LF5 21 U ribosomal protein THX 274
113 4V9A 21 AX, CX 30S RIBOSOMAL PROTEIN THX 274
114 4V5J 21 AU, CU 30S RIBOSOMAL PROTEIN THX 274
115 4V7Y 21 AU, CU 30S ribosomal protein Thx 274
116 4V8E 51 BX, DX 30S RIBOSOMAL PROTEIN THX 562
117 4DR4 21 U 30S ribosomal protein THX 274
118 4WZD 21 1B, 1F 30S ribosomal protein Thx 274
119 3OTO 21 U 30S RIBOSOMAL PROTEIN THX 274
120 4X66 21 U 30S ribosomal protein Thx 274
121 2UU9 21 U 30S RIBOSOMAL PROTEIN THX 274
122 4V8Q 55 BU 30S RIBOSOMAL PROTEIN THX 274
123 1HR0 22 V 30S RIBOSOMAL PROTEIN THX 274
124 4AQY 21 V 30S RIBOSOMAL PROTEIN THX 274
125 4W4G 21 QU, XU 30S ribosomal protein Thx 274
126 4NXM 21 U ribosomal protein THX 274
127 4V5L 21 AU 30S RIBOSOMAL PROTEIN THX 274
128 4YPB 21 QU, XU 30S ribosomal protein Thx 274
129 4V7X 21 AU, CU 30S ribosomal protein Thx 274
130 4ZER 52 1u, 2u 30S ribosomal protein Thx 274
131 1IBL 24 V 30S RIBOSOMAL PROTEIN THX 274
132 4V7W 21 AU, CU 30S ribosomal protein Thx 274
133 4WT1 21 1B, 1F 30S ribosomal protein Thx 274
134 4WT8 21 AW, BW 30S ribosomal protein Thx 274
135 5DOX 52 1u, 2u 30S ribosomal protein Thx 274
136 4NXN 21 U ribosomal protein THX 274
137 1XNR 23 V 16S Ribosomal protein THX 274
138 4LT8 21 QU, XU 30S ribosomal protein S21 274
139 4V51 21 AU, CU 30S RIBOSOMAL PROTEIN THX 274
140 4V7L 21 AU, CU 30S ribosomal protein Thx 274
141 4V5R 21 AU, CU 30S RIBOSOMAL PROTEIN THX 274
142 1HNZ 22 V 30S RIBOSOMAL PROTEIN THX 274
143 1XNQ 23 V Ribosomal protein THX 274
144 4V8A 51 CU, DU 30S ribosomal protein THX 274
145 4V5K 21 AU, CU 30S RIBOSOMAL PROTEIN THX 274
146 4V5Q 21 AU, CU 30S RIBOSOMAL PROTEIN THX 274
147 4V7J 20 Au, Bu 30S ribosomal protein Thx 274
148 4V5C 21 AU, CU 30S RIBOSOMAL PROTEIN THX 274
149 4V5E 21 AU, CU 30S RIBOSOMAL PROTEIN THX 274
150 4L47 21 QU, XU 30S ribosomal protein S21 274
151 4V5P 21 AU, CU 30S RIBOSOMAL PROTEIN THX 274
152 4V5D 21 AU, CU 30S RIBOSOMAL PROTEIN THX 274
153 4V7Z 21 AU, CU 30S ribosomal protein Thx 274
154 4V8X 21 AU, CU 30S RIBOSOMAL PROTEIN THX 274
155 4V5S 21 AU, CU 30S RIBOSOMAL PROTEIN THX 274
156 4V9I 21 AU, CU 30S Ribosomal protein THX 274
157 1XMO 23 V 30S ribosomal protein Thx 274
158 3T1H 21 V 30S ribosomal protein Thx 274
159 2UXD 21 V RIBOSOMAL PROTEIN THX 274
160 1N33 23 V 30S RIBOSOMAL PROTEIN THX 274
161 1IBK 22 V 30S RIBOSOMAL PROTEIN THX 274
162 4V6G 21 AX, CX 30S RIBOSOMAL PROTEIN THX 274
163 4V8N 21 AU, CU 30S RIBOSOMAL PROTEIN THX 274
164 4V97 21 AU, CU 30S ribosomal protein Thx 274
165 1HNW 22 V 30S RIBOSOMAL PROTEIN THX 274
166 4V7M 21 AU, CU 30S ribosomal protein Thx 274
167 4WSM 21 1B, 1F 30S ribosomal protein Thx 274
168 4TUD 21 QU, XU 30S ribosomal protein Thx 274
169 1IBM 24 V 30S RIBOSOMAL PROTEIN THX 274
170 4V6A 21 AU, CU 30S ribosomal protein Thx 274
171 4TUE 21 QU, XU 30S ribosomal protein Thx 274
172 4TUA 21 QU, XU 30S ribosomal protein Thx 274
173 4V84 21 AU, CU domain 3 of CrPV IGR IRES RNA 274
174 4V7K 20 Au, Bu 30S ribosomal protein Thx 274
175 1HNX 22 V 30S RIBOSOMAL PROTEIN THX 274
176 4V9Q 51 BU, DU 30S ribosomal protein Thx 274
177 4TUC 21 QU, XU 30S ribosomal protein Thx 274
178 4YHH 21 V 30S ribosomal protein Thx 274
179 4TUB 21 QU, XU 30S ribosomal protein Thx 274
180 4V9N 24 AU, CU 30S ribosomal protein Thx 274
181 4P70 21 QU, XU 30S ribosomal protein Thx 274
182 4V8U 21 AU, CU 30S RIBOSOMAL PROTEIN THX 274
183 4LSK 21 QU, XU 30S ribosomal protein S21 274
184 4P6F 21 QU, XU 30S ribosomal protein Thx 274
185 4V67 23 AU, CU 30S ribosomal protein Thx 274
186 4V83 21 AU, CU 30S ribosomal protein Thx 274
187 4V5F 21 AU, CU 30S RIBOSOMAL PROTEIN THX 274
188 1VVJ 21 QU, XU 30S ribosomal protein S21 274
189 4LFZ 21 QU, XU 30S ribosomal protein S21 274
190 2E5L 22 V 30S ribosomal protein Thx 274
191 2HHH 21 U 30S ribosomal protein Thx 274
192 4OX9 21 V 30S ribosomal protein Thx 274
193 2UXB 21 U RIBOSOMAL PROTEIN THX 274
194 1I96 21 U 30S RIBOSOMAL PROTEIN THX 274
195 1N34 22 V 30S RIBOSOMAL PROTEIN THX 274
196 4V5A 21 AU, CU 30S RIBOSOMAL PROTEIN THX 274
197 4V63 23 AU, CU 30S ribosomal protein Thx 274
198 4L71 21 QU, XU 30S ribosomal protein S21 274
199 4KVB 20 U 30S ribosomal protein Thx 274
200 4XEJ 48 ATHX, BTHX 30S ribosomal protein Thx 274
201 4V7P 21 AU, DU 30S ribosomal protein Thx 274
202 4V8J 21 AU, CU 30S ribosomal protein THX 274
203 1N36 21 V 30S RIBOSOMAL PROTEIN THX 274
204 2ZM6 21 V 30S ribosomal protein Thx 274
205 5D8B 48 RC, VA 30S ribosomal protein Thx 274
206 4LEL 21 QU, XU 30S ribosomal protein S21 274
207 4V5G 21 AU, CU 30S RIBOSOMAL PROTEIN THX 274
208 1I97 21 U 30S RIBOSOMAL PROTEIN THX 274
209 1I95 21 U 30S RIBOSOMAL PROTEIN THX 274
210 4V8O 21 AU 30S RIBOSOMAL PROTEIN THX 274
211 4V4Y 23 AX 30S ribosomal protein Thx 274
212 4V4J 54 v 30S ribosomal protein Thx 274
213 4V4X 23 AX 30S ribosomal protein Thx 274
214 4V4Z 24 AX 30S ribosomal protein Thx 274
215 4V4I 54 v 30S ribosomal protein Thx 274
216 4V4P 56 BX 30S ribosomal protein Thx 274
217 4V4R 24 AU 30S ribosomal protein Thx 274
218 4V4S 24 AU 30S ribosomal protein Thx 274
219 4V4T 24 AU 30S ribosomal protein Thx 274
220 5A9Z 54 BY 30S ribosomal protein Thx 274
221 5AA0 54 BY 30S ribosomal protein Thx 274
222 4V5N 21 AU 30S RIBOSOMAL PROTEIN THX 274
223 4V5M 21 AU 30S RIBOSOMAL PROTEIN THX 274
224 4V68 21 AU 30S ribosomal protein Thx 274
225 1ML5 26 X 30S RIBOSOMAL PROTEIN THX 562
226 1JGO 24 X 30S RIBOSOMAL PROTEIN THX 274
227 1JGP 24 X 30S RIBOSOMAL PROTEIN THX 274
228 1JGQ 24 X 30S RIBOSOMAL PROTEIN THX 274
229 4V42 24 AX 30S RIBOSOMAL PROTEIN THX 274