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Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Sequence Clustering and Redundancy Reduction Results
4JI8
Cluster # 135 Members. Sequence cutoff: 40% Cluster size: 189 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4Y4O 52 1u, 2u 30S ribosomal protein Thx 300852  
2 4W2F 21 AU, CU 30S Ribosomal Protein THX 300852  
3 4Y4P 52 1u, 2u 30S ribosomal protein Thx 300852  
4 4W2G 21 AU, CU 30S Ribosomal Protein THX 300852  
5 4LFB 21 U ribosomal protein THX 300852  
6 1VY4 21 AU, CU 30S ribosomal protein Thx 300852  
7 4W2I 21 AU, CU 30S Ribosomal Protein THX 300852  
8 1VY5 21 AU, CU 30S ribosomal protein Thx 300852  
9 4WQF 54 BU, DU 30S ribosomal protein Thx 300852  
10 4W2H 21 AU, CU 30S Ribosomal Protein THX 300852  
11 4WPO 54 BU, DU 30S ribosomal protein Thx 300852  
12 4V8I 21 AU, CU 30S Ribosomal Protein THX 274  
13 4JI1 21 U RIBOSOMAL PROTEIN THX 300852  
14 4DR6 21 U 30S ribosomal protein THX 300852  
15 4LF7 21 U ribosomal protein THX 300852  
16 4LF8 21 U ribosomal protein THX 300852  
17 4WQU 54 BU, DU 30S ribosomal protein Thx 300852  
18 2VQE 21 U 30S RIBOSOMAL PROTEIN THX 300852  
19 2UUB 21 U 30S RIBOSOMAL PROTEIN THX 300852  
20 4DV6 21 U ribosomal protein THX 300852  
21 4JYA 21 U 30S ribosomal protein THX 300852  
22 4DR5 21 U 30S ribosomal protein THX 300852  
23 4KHP 21 U 30S Ribosomal protein THX 300852  
24 4DR2 21 U 30S ribosomal protein THX 300852  
25 4LF9 21 U ribosomal protein THX 300852  
26 4WQY 54 BU, DU 30S ribosomal protein Thx 300852  
27 4DUY 21 U ribosomal protein THX 300852  
28 4DV7 21 U ribosomal protein THX 300852  
29 4V9H 24 AU 30S ribosomal protein THX 300852  
30 4V8D 21 AX, CX 30S RIBOSOMAL PROTEIN THX 1110693  
31 4DR3 21 U 30S ribosomal protein THX 300852  
32 4V90 21 AU 30S RIBOSOMAL PROTEIN THX 300852  
33 4JI3 21 U RIBOSOMAL PROTEIN THX 300852  
34 4JI6 21 U RIBOSOMAL PROTEIN THX 300852  
35 4JI8 21 U RIBOSOMAL PROTEIN THX 300852  
36 2UXC 21 U RIBOSOMAL PROTEIN THX 300852  
37 4V9R 21 AU, CU 30S Ribosomal Protein THX 274  
38 4B3M 21 V 30S RIBOSOMAL PROTEIN THX 300852  
39 4LF4 21 U ribosomal protein THX 300852  
40 4LF6 21 U ribosomal protein THX 300852  
41 4JI7 21 U RIBOSOMAL PROTEIN THX 300852  
42 4B3T 21 V 30S RIBOSOMAL PROTEIN THX 300852  
43 4V8B 21 AX, CX 30S RIBOSOMAL PROTEIN THX 300852  
44 2VQF 21 U 30S RIBOSOMAL PROTEIN THX 300852  
45 2UUA 21 U 30S RIBOSOMAL PROTEIN THX 300852  
46 4V87 51 BX, CX 30S RIBOSOMAL PROTEIN THX 1110693  
47 4V95 21 AU, CU 30S Ribosomal Protein THX 274  
48 1VY7 21 AU, CU 30S ribosomal protein Thx 300852  
49 4B3R 21 V 30S RIBOSOMAL PROTEIN THX 300852  
50 4LNT 21 QU, XU 30S ribosomal protein S21 300852  
51 4DR1 21 U 30S ribosomal protein THX 300852  
52 4LFA 21 U ribosomal protein THX 300852  
53 4DV4 21 U ribosomal protein THX 300852  
54 4JI0 21 U ribosomal protein THX 300852  
55 4V9S 21 AU, CU 30S Ribosomal Protein THX 274  
56 4JI2 21 U RIBOSOMAL PROTEIN THX 300852  
57 4JV5 21 U 30S ribosomal protein THX 300852  
58 4DR7 21 U 30S ribosomal protein THX 300852  
59 1J5E 21 V 30S RIBOSOMAL PROTEIN THX 274  
60 4GKK 21 V 30S ribosomal protein Thx 300852  
61 4DUZ 21 U ribosomal protein THX 300852  
62 4V8G 21 AU, CU 30S Ribosomal Protein THX 300852  
63 4GKJ 21 V 30S ribosomal protein Thx 300852  
64 4DV3 21 U ribosomal protein THX 300852  
65 4DV5 21 U ribosomal protein THX 300852  
66 2UUC 21 U 30S RIBOSOMAL PROTEIN THX 300852  
67 4LFC 21 U ribosomal protein THX 300852  
68 1FJG 22 V 30S RIBOSOMAL PROTEIN THX 274  
69 3T1Y 21 V 30S ribosomal protein Thx 300852  
70 4JI4 21 U RIBOSOMAL PROTEIN THX 300852  
71 1VY6 21 AU, CU 30S ribosomal protein Thx 300852  
72 1XMQ 23 V 30S Ribosomal Protein Thx 274  
73 4DV0 21 U ribosomal protein THX 300852  
74 4V9B 21 AX, CX 30S RIBOSOMAL PROTEIN THX 300852  
75 4V6F 51 BX, CX 30S ribosomal protein Thx 300852  
76 4V8F 51 BX, CX 30S RIBOSOMAL PROTEIN THX 1110693  
77 4B3S 21 V 30S RIBOSOMAL PROTEIN THX 300852  
78 4DV2 21 U ribosomal protein THX 300852  
79 4DV1 21 U ribosomal protein THX 300852  
80 1N32 23 V 30S RIBOSOMAL PROTEIN THX 274  
81 1I94 21 U 30S RIBOSOMAL PROTEIN THX 274  
82 4V8H 21 AU, CU 30S Ribosomal Protein THX 300852  
83 4JI5 21 U RIBOSOMAL PROTEIN THX 300852  
84 4K0K 21 U 30S ribosomal protein THX 32630  
85 4W2E 54 u 30S ribosomal protein Thx 300852  
86 4V8C 51 CX, DX 30S RIBOSOMAL PROTEIN THX 1110693  
87 4LF5 21 U ribosomal protein THX 300852  
88 4V9A 21 AX, CX 30S RIBOSOMAL PROTEIN THX 300852  
89 4V5J 21 AU, CU 30S RIBOSOMAL PROTEIN THX 300852  
90 4V7Y 21 AU, CU 30S ribosomal protein Thx 300852  
91 4V8E 51 BX, DX 30S RIBOSOMAL PROTEIN THX 1110693  
92 4DR4 21 U 30S ribosomal protein THX 300852  
93 3OTO 21 U 30S RIBOSOMAL PROTEIN THX 300852  
94 2UU9 21 U 30S RIBOSOMAL PROTEIN THX 300852  
95 4V8Q 55 BU 30S RIBOSOMAL PROTEIN THX 300852  
96 1HR0 22 V 30S RIBOSOMAL PROTEIN THX 274  
97 4AQY 21 V 30S RIBOSOMAL PROTEIN THX 274  
98 4NXM 21 U ribosomal protein THX 300852  
99 4V5L 21 AU 30S RIBOSOMAL PROTEIN THX 300852  
100 4V7X 21 AU, CU 30S ribosomal protein Thx 300852  
101 1IBL 24 V 30S RIBOSOMAL PROTEIN THX 274  
102 4V7W 21 AU, CU 30S ribosomal protein Thx 300852  
103 4WUS 22 W 30S ribosomal protein Thx 300852  
104 4WT8 21 W 30S ribosomal protein Thx 300852  
105 4NXN 21 U ribosomal protein THX 300852  
106 1XNR 23 V 16S Ribosomal protein THX 274  
107 4LT8 21 QU, XU 30S ribosomal protein S21 300852  
108 4V51 21 AU, CU 30S RIBOSOMAL PROTEIN THX 300852  
109 4V7L 21 AU, CU 30S ribosomal protein Thx 300852  
110 4V5R 21 AU, CU 30S RIBOSOMAL PROTEIN THX 300852  
111 1HNZ 22 V 30S RIBOSOMAL PROTEIN THX 274  
112 1XNQ 23 V Ribosomal protein THX 274  
113 4V8A 51 CU, DU 30S ribosomal protein THX 300852  
114 4V5K 21 AU, CU 30S RIBOSOMAL PROTEIN THX 300852  
115 4V5Q 21 AU, CU 30S RIBOSOMAL PROTEIN THX 300852  
116 4V7J 20 Au, Bu 30S ribosomal protein Thx 300852  
117 4V5C 21 AU, CU 30S RIBOSOMAL PROTEIN THX 300852  
118 4V5E 21 AU, CU 30S RIBOSOMAL PROTEIN THX 300852  
119 4L47 21 QU, XU 30S ribosomal protein S21 300852  
120 4V5P 21 AU, CU 30S RIBOSOMAL PROTEIN THX 300852  
121 4V5D 21 AU, CU 30S RIBOSOMAL PROTEIN THX 300852  
122 4V7Z 21 AU, CU 30S ribosomal protein Thx 300852  
123 4V8X 21 AU, CU 30S RIBOSOMAL PROTEIN THX 300852  
124 4V5S 21 AU, CU 30S RIBOSOMAL PROTEIN THX 300852  
125 4V9I 21 AU, CU 30S Ribosomal protein THX 300852  
126 1XMO 23 V 30S ribosomal protein Thx 274  
127 3T1H 21 V 30S ribosomal protein Thx 300852  
128 2UXD 21 V RIBOSOMAL PROTEIN THX 300852  
129 1N33 23 V 30S RIBOSOMAL PROTEIN THX 274  
130 1IBK 22 V 30S RIBOSOMAL PROTEIN THX 274  
131 4V6G 21 AX, CX 30S RIBOSOMAL PROTEIN THX 300852  
132 4V8N 21 AU, CU 30S RIBOSOMAL PROTEIN THX 300852  
133 4V97 21 AU, CU 30S ribosomal protein Thx 300852  
134 1HNW 22 V 30S RIBOSOMAL PROTEIN THX 274  
135 4V7M 21 AU, CU 30S ribosomal protein Thx 300852  
136 1IBM 24 V 30S RIBOSOMAL PROTEIN THX 274  
137 4V6A 21 AU, CU 30S ribosomal protein Thx 300852  
138 4V84 21 AU, CU domain 3 of CrPV IGR IRES RNA 262724  
139 4V7K 20 Au, Bu 30S ribosomal protein Thx 300852  
140 1HNX 22 V 30S RIBOSOMAL PROTEIN THX 274  
141 4V9Q 51 BU, DU 30S ribosomal protein Thx 262724  
142 4YHH 21 V 30S ribosomal protein Thx 271  
143 4V9N 24 AU, CU 30S ribosomal protein Thx 262724  
144 4P70 21 QU, XU 30S ribosomal protein Thx 300852  
145 4V8U 21 AU, CU 30S RIBOSOMAL PROTEIN THX 300852  
146 4LSK 21 QU, XU 30S ribosomal protein S21 300852  
147 4P6F 21 QU, XU 30S ribosomal protein Thx 300852  
148 4V67 23 AU, CU 30S ribosomal protein Thx 274  
149 4V83 21 AU, CU 30S ribosomal protein Thx 262724  
150 4V5F 21 AU, CU 30S RIBOSOMAL PROTEIN THX 300852  
151 1VVJ 21 QU, XU 30S ribosomal protein S21 300852  
152 4LFZ 21 QU, XU 30S ribosomal protein S21 300852  
153 2E5L 22 V 30S ribosomal protein Thx 274  
154 2HHH 21 U 30S ribosomal protein Thx 300852  
155 4OX9 21 V 30S ribosomal protein Thx 300852  
156 2UXB 21 U RIBOSOMAL PROTEIN THX 300852  
157 1I96 21 U 30S RIBOSOMAL PROTEIN THX 274  
158 1N34 22 V 30S RIBOSOMAL PROTEIN THX 274  
159 4V5A 21 AU, CU 30S RIBOSOMAL PROTEIN THX 300852  
160 4V63 23 AU, CU 30S ribosomal protein Thx 262724  
161 4L71 21 QU, XU 30S ribosomal protein S21 300852  
162 4KVB 20 U 30S ribosomal protein Thx 262724  
163 4XEJ 48 ATHX, BTHX 30S ribosomal protein Thx 262724  
164 4V7P 21 AU, DU 30S ribosomal protein Thx 262724  
165 4V8J 21 AU, CU 30S ribosomal protein THX 300852  
166 1N36 21 V 30S RIBOSOMAL PROTEIN THX 274  
167 2ZM6 21 V 30S ribosomal protein Thx 274  
168 4LEL 21 QU, XU 30S ribosomal protein S21 300852  
169 4V5G 21 AU, CU 30S RIBOSOMAL PROTEIN THX 300852  
170 1I97 21 U 30S RIBOSOMAL PROTEIN THX 274  
171 1I95 21 U 30S RIBOSOMAL PROTEIN THX 274  
172 4V8O 21 AU 30S RIBOSOMAL PROTEIN THX 300852  
173 4V4Y 23 AX 30S ribosomal protein Thx 300852  
174 4V4J 54 v 30S ribosomal protein Thx 262724  
175 4V4X 23 AX 30S ribosomal protein Thx 300852  
176 4V4Z 24 AX 30S ribosomal protein Thx 300852  
177 4V4I 54 v 30S ribosomal protein Thx 262724  
178 4V4P 56 BX 30S ribosomal protein Thx 300852  
179 4V4R 24 AU 30S ribosomal protein Thx 300852  
180 4V4S 24 AU 30S ribosomal protein Thx 300852  
181 4V4T 24 AU 30S ribosomal protein Thx 300852  
182 4V5N 21 AU 30S RIBOSOMAL PROTEIN THX 300852  
183 4V5M 21 AU 30S RIBOSOMAL PROTEIN THX 300852  
184 4V68 21 AU 30S ribosomal protein Thx 274  
185 1ML5 26 X 30S RIBOSOMAL PROTEIN THX 562  
186 1JGO 24 X 30S RIBOSOMAL PROTEIN THX 274  
187 1JGP 24 X 30S RIBOSOMAL PROTEIN THX 274  
188 1JGQ 24 X 30S RIBOSOMAL PROTEIN THX 274  
189 4V42 24 AX 30S RIBOSOMAL PROTEIN THX 274  
 
Sequence Clusters for the Sequence Entities in PDB 4JI8
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 197 29
95% 35 198 46
90% 35 198 48
70% 35 198 61
50% 46 283 35
40% 46 283 45
30% 51 334 46
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 199 26
95% 35 199 40
90% 35 199 42
70% 35 199 54
50% 40 277 41
40% 47 335 35
30% 47 336 45
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 18041
95% 35 206 32
90% 35 206 34
70% 40 288 24
50% 40 289 34
40% 40 289 44
30% 40 289 69
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 200 23
95% 35 200 38
90% 35 200 40
70% 35 200 51
50% 40 282 39
40% 40 282 50
30% 45 335 49
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 198 27
95% 35 198 47
90% 35 198 49
70% 35 199 57
50% 35 199 90
40% 35 199 113
30% 35 199 137
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 202 21
95% 37 207 31
90% 37 207 33
70% 37 207 43
50% 45 290 33
40% 45 291 43
30% 45 291 67
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 194 30
95% 35 199 42
90% 35 199 44
70% 35 199 56
50% 35 199 89
40% 35 200 112
30% 40 280 76
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 113 66
95% 35 193 50
90% 35 197 50
70% 35 197 62
50% 35 197 94
40% 35 197 117
30% 35 197 139
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 125 59
95% 32 174 72
90% 32 174 76
70% 32 174 90
50% 32 174 131
40% 32 174 149
30% 32 174 164
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 202 20
95% 36 202 34
90% 36 202 37
70% 36 202 47
50% 41 280 38
40% 41 280 49
30% 41 280 73
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 199 24
95% 35 200 35
90% 35 200 38
70% 35 200 48
50% 40 276 43
40% 40 277 52
30% 40 277 75
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 149 54
95% 35 198 45
90% 35 198 47
70% 35 198 60
50% 35 198 93
40% 35 198 115
30% 35 198 138
Entity #21: Chains: U - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 189 32
95% 35 189 52
90% 35 189 55
70% 35 189 68
50% 35 189 112
40% 35 189 135
30% 35 189 153
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 173 48
95% 32 173 73
90% 32 173 77
70% 32 173 92
50% 33 214 78
40% 33 214 102
30% 33 214 123
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 192 31
95% 35 200 36
90% 35 200 39
70% 35 200 49
50% 40 277 40
40% 40 278 51
30% 40 278 74
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 199 25
95% 35 199 39
90% 35 199 41
70% 35 199 52
50% 41 281 37
40% 41 281 48
30% 41 283 72
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 204 18
95% 42 210 30
90% 42 210 32
70% 42 210 42
50% 42 210 83
40% 42 210 107
30% 48 249 87
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 203 19
95% 36 204 33
90% 36 204 35
70% 36 204 44
50% 41 247 56
40% 41 248 71
30% 41 248 95
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 199 22
95% 36 199 37
90% 36 203 36
70% 36 203 45
50% 43 283 36
40% 44 285 46
30% 50 339 44
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 109 86
95% 35 199 41
90% 35 199 43
70% 35 199 55
50% 40 277 42
40% 40 277 54
30% 45 330 50
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.