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Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Sequence Clustering and Redundancy Reduction Results
4JI8
Cluster # 134 Members. Sequence cutoff: 40% Cluster size: 186 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4W2F 21 AU, CU 30S Ribosomal Protein THX 300852  
2 4W2G 21 AU, CU 30S Ribosomal Protein THX 300852  
3 4LFB 21 U ribosomal protein THX 300852  
4 1VY4 21 AU, CU 30S ribosomal protein Thx 300852  
5 4W2I 21 AU, CU 30S Ribosomal Protein THX 300852  
6 1VY5 21 AU, CU 30S ribosomal protein Thx 300852  
7 4WQF 54 BU, DU 30S ribosomal protein Thx 300852  
8 4W2H 21 AU, CU 30S Ribosomal Protein THX 300852  
9 4WPO 54 BU, DU 30S ribosomal protein Thx 300852  
10 4V8I 21 AU, CU 30S Ribosomal Protein THX 274  
11 4JI1 21 U RIBOSOMAL PROTEIN THX 300852  
12 4DR6 21 U 30S ribosomal protein THX 300852  
13 4LF7 21 U ribosomal protein THX 300852  
14 4LF8 21 U ribosomal protein THX 300852  
15 4WQU 54 BU, DU 30S ribosomal protein Thx 300852  
16 2VQE 21 U 30S RIBOSOMAL PROTEIN THX 300852  
17 2UUB 21 U 30S RIBOSOMAL PROTEIN THX 300852  
18 4DV6 21 U ribosomal protein THX 300852  
19 4JYA 21 U 30S ribosomal protein THX 300852  
20 4DR5 21 U 30S ribosomal protein THX 300852  
21 4KHP 21 U 30S Ribosomal protein THX 300852  
22 4DR2 21 U 30S ribosomal protein THX 300852  
23 4LF9 21 U ribosomal protein THX 300852  
24 4WQY 54 BU, DU 30S ribosomal protein Thx 300852  
25 4DUY 21 U ribosomal protein THX 300852  
26 4DV7 21 U ribosomal protein THX 300852  
27 4V9H 24 AU 30S ribosomal protein THX 300852  
28 4V8D 21 AX, CX 30S RIBOSOMAL PROTEIN THX 1110693  
29 4DR3 21 U 30S ribosomal protein THX 300852  
30 4V90 21 AU 30S RIBOSOMAL PROTEIN THX 300852  
31 4JI3 21 U RIBOSOMAL PROTEIN THX 300852  
32 4JI6 21 U RIBOSOMAL PROTEIN THX 300852  
33 4JI8 21 U RIBOSOMAL PROTEIN THX 300852  
34 2UXC 21 U RIBOSOMAL PROTEIN THX 300852  
35 4V9R 21 AU, CU 30S Ribosomal Protein THX 274  
36 4B3M 21 V 30S RIBOSOMAL PROTEIN THX 300852  
37 4LF4 21 U ribosomal protein THX 300852  
38 4LF6 21 U ribosomal protein THX 300852  
39 4JI7 21 U RIBOSOMAL PROTEIN THX 300852  
40 4B3T 21 V 30S RIBOSOMAL PROTEIN THX 300852  
41 4V8B 21 AX, CX 30S RIBOSOMAL PROTEIN THX 300852  
42 2VQF 21 U 30S RIBOSOMAL PROTEIN THX 300852  
43 2UUA 21 U 30S RIBOSOMAL PROTEIN THX 300852  
44 4V87 51 BX, CX 30S RIBOSOMAL PROTEIN THX 1110693  
45 4V95 21 AU, CU 30S Ribosomal Protein THX 274  
46 1VY7 21 AU, CU 30S ribosomal protein Thx 300852  
47 4B3R 21 V 30S RIBOSOMAL PROTEIN THX 300852  
48 4LNT 21 QU, XU 30S ribosomal protein S21 300852  
49 4DR1 21 U 30S ribosomal protein THX 300852  
50 4LFA 21 U ribosomal protein THX 300852  
51 4DV4 21 U ribosomal protein THX 300852  
52 4JI0 21 U ribosomal protein THX 300852  
53 4V9S 21 AU, CU 30S Ribosomal Protein THX 274  
54 4JI2 21 U RIBOSOMAL PROTEIN THX 300852  
55 4JV5 21 U 30S ribosomal protein THX 300852  
56 4DR7 21 U 30S ribosomal protein THX 300852  
57 1J5E 21 V 30S RIBOSOMAL PROTEIN THX 274  
58 4GKK 21 V 30S ribosomal protein Thx 300852  
59 4DUZ 21 U ribosomal protein THX 300852  
60 4V8G 21 AU, CU 30S Ribosomal Protein THX 300852  
61 4GKJ 21 V 30S ribosomal protein Thx 300852  
62 4DV3 21 U ribosomal protein THX 300852  
63 4DV5 21 U ribosomal protein THX 300852  
64 2UUC 21 U 30S RIBOSOMAL PROTEIN THX 300852  
65 4LFC 21 U ribosomal protein THX 300852  
66 1FJG 22 V 30S RIBOSOMAL PROTEIN THX 274  
67 3T1Y 21 V 30S ribosomal protein Thx 300852  
68 4JI4 21 U RIBOSOMAL PROTEIN THX 300852  
69 1VY6 21 AU, CU 30S ribosomal protein Thx 300852  
70 1XMQ 23 V 30S Ribosomal Protein Thx 274  
71 4DV0 21 U ribosomal protein THX 300852  
72 4V9B 21 AX, CX 30S RIBOSOMAL PROTEIN THX 300852  
73 4V6F 51 BX, CX 30S ribosomal protein Thx 300852  
74 4V8F 51 BX, CX 30S RIBOSOMAL PROTEIN THX 1110693  
75 4B3S 21 V 30S RIBOSOMAL PROTEIN THX 300852  
76 4DV2 21 U ribosomal protein THX 300852  
77 4DV1 21 U ribosomal protein THX 300852  
78 1N32 23 V 30S RIBOSOMAL PROTEIN THX 274  
79 1I94 21 U 30S RIBOSOMAL PROTEIN THX 274  
80 4V8H 21 AU, CU 30S Ribosomal Protein THX 300852  
81 4JI5 21 U RIBOSOMAL PROTEIN THX 300852  
82 4K0K 21 U 30S ribosomal protein THX 32630  
83 4W2E 54 u 30S ribosomal protein Thx 300852  
84 4V8C 51 CX, DX 30S RIBOSOMAL PROTEIN THX 1110693  
85 4LF5 21 U ribosomal protein THX 300852  
86 4V9A 21 AX, CX 30S RIBOSOMAL PROTEIN THX 300852  
87 4V5J 21 AU, CU 30S RIBOSOMAL PROTEIN THX 300852  
88 4V7Y 21 AU, CU 30S ribosomal protein Thx 300852  
89 4V8E 51 BX, DX 30S RIBOSOMAL PROTEIN THX 1110693  
90 4DR4 21 U 30S ribosomal protein THX 300852  
91 3OTO 21 U 30S RIBOSOMAL PROTEIN THX 300852  
92 2UU9 21 U 30S RIBOSOMAL PROTEIN THX 300852  
93 4V8Q 55 BU 30S RIBOSOMAL PROTEIN THX 300852  
94 1HR0 22 V 30S RIBOSOMAL PROTEIN THX 274  
95 4AQY 21 V 30S RIBOSOMAL PROTEIN THX 274  
96 4NXM 21 U ribosomal protein THX 300852  
97 4V5L 21 AU 30S RIBOSOMAL PROTEIN THX 300852  
98 4V7X 21 AU, CU 30S ribosomal protein Thx 300852  
99 1IBL 24 V 30S RIBOSOMAL PROTEIN THX 274  
100 4V7W 21 AU, CU 30S ribosomal protein Thx 300852  
101 4WUS 22 W 30S ribosomal protein Thx 300852  
102 4WT8 21 W 30S ribosomal protein Thx 300852  
103 4NXN 21 U ribosomal protein THX 300852  
104 1XNR 23 V 16S Ribosomal protein THX 274  
105 4LT8 21 QU, XU 30S ribosomal protein S21 300852  
106 4V51 21 AU, CU 30S RIBOSOMAL PROTEIN THX 300852  
107 4V7L 21 AU, CU 30S ribosomal protein Thx 300852  
108 4V5R 21 AU, CU 30S RIBOSOMAL PROTEIN THX 300852  
109 1HNZ 22 V 30S RIBOSOMAL PROTEIN THX 274  
110 1XNQ 23 V Ribosomal protein THX 274  
111 4V8A 51 CU, DU 30S ribosomal protein THX 300852  
112 4V5K 21 AU, CU 30S RIBOSOMAL PROTEIN THX 300852  
113 4V5Q 21 AU, CU 30S RIBOSOMAL PROTEIN THX 300852  
114 4V7J 20 Au, Bu 30S ribosomal protein Thx 300852  
115 4V5C 21 AU, CU 30S RIBOSOMAL PROTEIN THX 300852  
116 4V5E 21 AU, CU 30S RIBOSOMAL PROTEIN THX 300852  
117 4L47 21 QU, XU 30S ribosomal protein S21 300852  
118 4V5P 21 AU, CU 30S RIBOSOMAL PROTEIN THX 300852  
119 4V5D 21 AU, CU 30S RIBOSOMAL PROTEIN THX 300852  
120 4V7Z 21 AU, CU 30S ribosomal protein Thx 300852  
121 4V8X 21 AU, CU 30S RIBOSOMAL PROTEIN THX 300852  
122 4V5S 21 AU, CU 30S RIBOSOMAL PROTEIN THX 300852  
123 4V9I 21 AU, CU 30S Ribosomal protein THX 300852  
124 1XMO 23 V 30S ribosomal protein Thx 274  
125 3T1H 21 V 30S ribosomal protein Thx 300852  
126 2UXD 21 V RIBOSOMAL PROTEIN THX 300852  
127 1N33 23 V 30S RIBOSOMAL PROTEIN THX 274  
128 1IBK 22 V 30S RIBOSOMAL PROTEIN THX 274  
129 4V6G 21 AX, CX 30S RIBOSOMAL PROTEIN THX 300852  
130 4V8N 21 AU, CU 30S RIBOSOMAL PROTEIN THX 300852  
131 4V97 21 AU, CU 30S ribosomal protein Thx 300852  
132 1HNW 22 V 30S RIBOSOMAL PROTEIN THX 274  
133 4V7M 21 AU, CU 30S ribosomal protein Thx 300852  
134 1IBM 24 V 30S RIBOSOMAL PROTEIN THX 274  
135 4V6A 21 AU, CU 30S ribosomal protein Thx 300852  
136 4V84 21 AU, CU domain 3 of CrPV IGR IRES RNA 262724  
137 4V7K 20 Au, Bu 30S ribosomal protein Thx 300852  
138 1HNX 22 V 30S RIBOSOMAL PROTEIN THX 274  
139 4V9Q 51 BU, DU 30S ribosomal protein Thx 262724  
140 4V9N 24 AU, CU 30S ribosomal protein Thx 262724  
141 4P70 21 QU, XU 30S ribosomal protein Thx 300852  
142 4V8U 21 AU, CU 30S RIBOSOMAL PROTEIN THX 300852  
143 4LSK 21 QU, XU 30S ribosomal protein S21 300852  
144 4P6F 21 QU, XU 30S ribosomal protein Thx 300852  
145 4V67 23 AU, CU 30S ribosomal protein Thx 274  
146 4V83 21 AU, CU 30S ribosomal protein Thx 262724  
147 4V5F 21 AU, CU 30S RIBOSOMAL PROTEIN THX 300852  
148 1VVJ 21 QU, XU 30S ribosomal protein S21 300852  
149 4LFZ 21 QU, XU 30S ribosomal protein S21 300852  
150 2E5L 22 V 30S ribosomal protein Thx 274  
151 2HHH 21 U 30S ribosomal protein Thx 300852  
152 4OX9 21 V 30S ribosomal protein Thx 300852  
153 2UXB 21 U RIBOSOMAL PROTEIN THX 300852  
154 1I96 21 U 30S RIBOSOMAL PROTEIN THX 274  
155 1N34 22 V 30S RIBOSOMAL PROTEIN THX 274  
156 4V5A 21 AU, CU 30S RIBOSOMAL PROTEIN THX 300852  
157 4V63 23 AU, CU 30S ribosomal protein Thx 262724  
158 4L71 21 QU, XU 30S ribosomal protein S21 300852  
159 4KVB 20 U 30S ribosomal protein Thx 262724  
160 4XEJ 48 ATHX, BTHX 30S ribosomal protein Thx 262724  
161 4V7P 21 AU, DU 30S ribosomal protein Thx 262724  
162 4V8J 21 AU, CU 30S ribosomal protein THX 300852  
163 1N36 21 V 30S RIBOSOMAL PROTEIN THX 274  
164 2ZM6 21 V 30S ribosomal protein Thx 274  
165 4LEL 21 QU, XU 30S ribosomal protein S21 300852  
166 4V5G 21 AU, CU 30S RIBOSOMAL PROTEIN THX 300852  
167 1I97 21 U 30S RIBOSOMAL PROTEIN THX 274  
168 1I95 21 U 30S RIBOSOMAL PROTEIN THX 274  
169 4V8O 21 AU 30S RIBOSOMAL PROTEIN THX 300852  
170 4V4Y 23 AX 30S ribosomal protein Thx 300852  
171 4V4J 54 v 30S ribosomal protein Thx 262724  
172 4V4X 23 AX 30S ribosomal protein Thx 300852  
173 4V4Z 24 AX 30S ribosomal protein Thx 300852  
174 4V4I 54 v 30S ribosomal protein Thx 262724  
175 4V4P 56 BX 30S ribosomal protein Thx 300852  
176 4V4R 24 AU 30S ribosomal protein Thx 300852  
177 4V4S 24 AU 30S ribosomal protein Thx 300852  
178 4V4T 24 AU 30S ribosomal protein Thx 300852  
179 4V5N 21 AU 30S RIBOSOMAL PROTEIN THX 300852  
180 4V5M 21 AU 30S RIBOSOMAL PROTEIN THX 300852  
181 4V68 21 AU 30S ribosomal protein Thx 274  
182 1ML5 26 X 30S RIBOSOMAL PROTEIN THX 562  
183 1JGO 24 X 30S RIBOSOMAL PROTEIN THX 274  
184 1JGP 24 X 30S RIBOSOMAL PROTEIN THX 274  
185 1JGQ 24 X 30S RIBOSOMAL PROTEIN THX 274  
186 4V42 24 AX 30S RIBOSOMAL PROTEIN THX 274  
 
Sequence Clusters for the Sequence Entities in PDB 4JI8
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 194 28
95% 33 195 46
90% 33 195 48
70% 33 195 59
50% 43 276 35
40% 43 276 45
30% 48 327 46
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 196 26
95% 33 196 42
90% 33 196 44
70% 33 196 55
50% 37 270 42
40% 44 326 35
30% 44 326 47
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 17801
95% 33 203 31
90% 33 203 33
70% 37 282 24
50% 37 282 34
40% 37 282 44
30% 37 282 69
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 197 23
95% 33 197 38
90% 33 197 40
70% 33 197 52
50% 37 275 39
40% 37 275 52
30% 42 327 48
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 195 27
95% 33 195 47
90% 33 195 49
70% 33 195 60
50% 33 195 93
40% 33 195 116
30% 33 195 139
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 199 19
95% 35 204 30
90% 35 204 32
70% 35 204 44
50% 42 283 33
40% 42 283 43
30% 42 283 68
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 191 29
95% 33 196 44
90% 33 196 46
70% 33 196 57
50% 33 196 90
40% 33 196 114
30% 37 273 77
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 110 66
95% 33 190 49
90% 33 194 50
70% 33 194 61
50% 33 194 94
40% 33 194 117
30% 33 194 141
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 123 60
95% 30 172 70
90% 30 172 74
70% 30 172 88
50% 30 172 125
40% 30 172 146
30% 30 172 165
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 174 47
95% 31 174 69
90% 31 174 73
70% 31 174 87
50% 38 273 38
40% 38 273 50
30% 38 273 73
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 196 24
95% 33 197 35
90% 33 197 38
70% 33 197 50
50% 33 197 89
40% 37 270 54
30% 37 270 76
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 146 54
95% 33 195 45
90% 33 195 47
70% 33 195 58
50% 33 195 92
40% 33 195 115
30% 33 195 138
Entity #21: Chains: U - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 186 32
95% 33 186 51
90% 33 186 54
70% 33 186 66
50% 33 186 111
40% 33 186 134
30% 33 186 152
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 171 48
95% 30 171 73
90% 30 171 76
70% 30 171 90
50% 31 210 77
40% 31 210 101
30% 31 210 122
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 189 30
95% 33 197 36
90% 33 197 39
70% 33 197 51
50% 37 270 40
40% 37 271 53
30% 37 271 75
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 196 25
95% 33 196 40
90% 33 196 42
70% 33 196 54
50% 38 274 37
40% 38 274 49
30% 38 276 71
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 201 17
95% 40 207 29
90% 40 207 31
70% 40 207 42
50% 40 207 82
40% 40 207 108
30% 45 244 91
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 200 18
95% 34 201 33
90% 34 201 35
70% 34 201 46
50% 38 242 55
40% 38 243 71
30% 38 243 95
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 196 22
95% 34 196 37
90% 34 200 36
70% 34 200 47
50% 40 276 36
40% 41 278 46
30% 47 331 45
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 106 87
95% 33 196 43
90% 33 196 45
70% 33 196 56
50% 37 270 41
40% 37 270 55
30% 42 322 50
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.