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Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Sequence Clustering and Redundancy Reduction Results
4JI8
Cluster # 43 Members. Sequence cutoff: 95% Cluster size: 208 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4Y4O 51 1t, 2t 30S ribosomal protein S20 300852  
2 4W2F 20 AT, CT 30S Ribosomal Protein S20 300852  
3 4Y4P 51 1t, 2t 30S ribosomal protein S20 300852  
4 4W2G 20 AT, CT 30S Ribosomal Protein S20 300852  
5 4LFB 20 T ribosomal protein S20 300852  
6 1VY4 20 AT, CT 30S ribosomal protein S20 300852  
7 4W2I 20 AT, CT 30S Ribosomal Protein S20 300852  
8 1VY5 20 AT, CT 30S ribosomal protein S20 300852  
9 4WQF 53 BT, DT 30S ribosomal protein S20 300852  
10 4W2H 20 AT, CT 30S Ribosomal Protein S20 300852  
11 4WPO 53 BT, DT 30S ribosomal protein S20 300852  
12 4V8I 20 AT, CT 30S Ribosomal Protein S20 274  
13 4JI1 20 T RIBOSOMAL PROTEIN S20 300852  
14 4Z3S 51 1t, 2t 30S ribosomal protein S20 300852  
15 4Z3Q 51 1t, 2t 30S Ribosomal Protein S20 300852  
16 4DR6 20 T 30S ribosomal protein S20 300852  
17 4LF7 20 T ribosomal protein S20 300852  
18 4LF8 20 T ribosomal protein S20 300852  
19 4WQU 53 BT, DT 30S ribosomal protein S20 300852  
20 2VQE 20 T 30S RIBOSOMAL PROTEIN S20 300852  
21 4Z8C 51 1t, 2t 30S ribosomal protein S20 300852  
22 2UUB 20 T 30S RIBOSOMAL PROTEIN S20 300852  
23 4DV6 20 T ribosomal protein S20 300852  
24 4JYA 20 T 30S ribosomal protein S20 300852  
25 4DR5 20 T 30S ribosomal protein S20 300852  
26 4KHP 20 T 30S Ribosomal protein S20 300852  
27 4DR2 20 T 30S ribosomal protein S20 300852  
28 4LF9 20 T ribosomal protein S20 300852  
29 4WQY 53 BT, DT 30S ribosomal protein S20 300852  
30 4DUY 20 T ribosomal protein S20 300852  
31 4DV7 20 T ribosomal protein S20 300852  
32 4V9H 14 AT 30S ribosomal protein S20 300852  
33 4V8D 20 AW, CW 30S RIBOSOMAL PROTEIN S20 300852  
34 4DR3 20 T 30S ribosomal protein S20 300852  
35 4V90 20 AT 30S RIBOSOMAL PROTEIN S20 300852  
36 4JI3 20 T RIBOSOMAL PROTEIN S20 300852  
37 4JI6 20 T RIBOSOMAL PROTEIN S20 300852  
38 4JI8 20 T RIBOSOMAL PROTEIN S20 300852  
39 2UXC 20 T RIBOSOMAL PROTEIN S20 300852  
40 4V9R 20 AT, CT 30S Ribosomal Protein S20 274  
41 4B3M 20 T 30S RIBOSOMAL PROTEIN S20 300852  
42 4LF4 20 T ribosomal protein S20 300852  
43 4LF6 20 T ribosomal protein S20 300852  
44 4JI7 20 T RIBOSOMAL PROTEIN S20 300852  
45 4B3T 20 T 30S RIBOSOMAL PROTEIN S20 300852  
46 4V8B 20 AW, CW 30S RIBOSOMAL PROTEIN S20 300852  
47 2VQF 20 T 30S RIBOSOMAL PROTEIN S20 300852  
48 2UUA 20 T 30S RIBOSOMAL PROTEIN S20 300852  
49 4V87 50 BW, CW 30S RIBOSOMAL PROTEIN S20 300852  
50 4V95 20 AT, CT 30S Ribosomal Protein S20 274  
51 1VY7 20 AT, CT 30S ribosomal protein S20 300852  
52 4B3R 20 T 30S RIBOSOMAL PROTEIN S20 300852  
53 4LNT 20 QT, XT 30S ribosomal protein S20 300852  
54 4DR1 20 T 30S ribosomal protein S20 300852  
55 4LFA 20 T ribosomal protein S20 300852  
56 4DV4 20 T ribosomal protein S20 300852  
57 4JI0 20 T ribosomal protein S20 300852  
58 4V9S 20 AT, CT 30S Ribosomal Protein S20 274  
59 4JI2 20 T RIBOSOMAL PROTEIN S20 300852  
60 4JV5 20 T 30S ribosomal protein 20 300852  
61 4DR7 20 T 30S ribosomal protein S20 300852  
62 1J5E 20 T 30S RIBOSOMAL PROTEIN S20 274  
63 4GKK 20 T 30S ribosomal protein S20 300852  
64 4DUZ 20 T ribosomal protein S20 300852  
65 4V8G 20 AT, CT 30S Ribosomal Protein S20 300852  
66 4GKJ 20 T 30S ribosomal protein S20 300852  
67 4DV3 20 T ribosomal protein S20 300852  
68 4DV5 20 T ribosomal protein S20 300852  
69 2UUC 20 T 30S RIBOSOMAL PROTEIN S20 300852  
70 4LFC 20 T ribosomal protein S20 300852  
71 1FJG 21 T 30S RIBOSOMAL PROTEIN S20 274  
72 3T1Y 20 T 30S ribosomal protein S20 262724  
73 4JI4 20 T RIBOSOMAL PROTEIN S20 300852  
74 1VY6 20 AT, CT 30S ribosomal protein S20 300852  
75 1XMQ 22 T 30S Ribosomal Protein S20 274  
76 4DV0 20 T ribosomal protein S20 300852  
77 4V9B 20 AW, CW 30S RIBOSOMAL PROTEIN S20 300852  
78 4V6F 50 BW, CW 30S ribosomal protein S20 300852  
79 4V8F 50 BW, CW 30S RIBOSOMAL PROTEIN S20 300852  
80 4B3S 20 T 30S RIBOSOMAL PROTEIN S20 300852  
81 4DV2 20 T ribosomal protein S20 300852  
82 4DV1 20 T ribosomal protein S20 300852  
83 1N32 22 T 30S RIBOSOMAL PROTEIN S20 274  
84 1I94 20 T 30S RIBOSOMAL PROTEIN S20 274  
85 4V8H 20 AT, CT 30S Ribosomal Protein S20 300852  
86 4JI5 20 T RIBOSOMAL PROTEIN S20 300852  
87 4K0K 20 T 30S ribosomal protein S20 300852  
88 4W2E 53 t 30S ribosomal protein S20 300852  
89 4V8C 50 CW, DW 30S RIBOSOMAL PROTEIN S20 300852  
90 4LF5 20 T ribosomal protein S20 300852  
91 4V9A 20 AW, CW 30S RIBOSOMAL PROTEIN S20 300852  
92 4V5J 20 AT, CT 30S RIBOSOMAL PROTEIN S20 300852  
93 4V7Y 20 AT, CT 30S ribosomal protein S20 300852  
94 4V8E 50 BW, DW 30S RIBOSOMAL PROTEIN S20 300852  
95 4DR4 20 T 30S ribosomal protein S20 300852  
96 3OTO 20 T 30S RIBOSOMAL PROTEIN S20 300852  
97 2UU9 20 T 30S RIBOSOMAL PROTEIN S20 300852  
98 4V8Q 54 BT 30S RIBOSOMAL PROTEIN S20 300852  
99 1HR0 21 T 30S RIBOSOMAL PROTEIN S20 274  
100 4AQY 20 T 30S RIBOSOMAL PROTEIN S20 274  
101 4NXM 20 T ribosomal protein S20 300852  
102 4V5L 20 AT 30S RIBOSOMAL PROTEIN S20 300852  
103 4V7X 20 AT, CT 30S ribosomal protein S20 300852  
104 4ZER 51 1t, 2t 30S ribosomal protein S20 300852  
105 1IBL 23 T 30S RIBOSOMAL PROTEIN S20 274  
106 4V7W 20 AT, CT 30S ribosomal protein S20 300852  
107 4Z3R 51 1t, 2t 30S ribosomal protein S20 300852  
108 4WUS 21 U 30S ribosomal protein S20 300852  
109 4WT8 20 U 30S ribosomal protein S20 300852  
110 4NXN 20 T ribosomal protein S20 300852  
111 1XNR 22 T 16S Ribosomal protein S20 274  
112 4LT8 20 QT, XT 30S ribosomal protein S20 300852  
113 4V51 20 AT, CT 30S RIBOSOMAL PROTEIN S20 300852  
114 4V7L 20 AT, CT 30S ribosomal protein S20 300852  
115 4V5R 20 AT, CT 30S RIBOSOMAL PROTEIN S20 300852  
116 1HNZ 21 T 30S RIBOSOMAL PROTEIN S20 274  
117 1XNQ 22 T Ribosomal protein S20 274  
118 4V8A 50 CT, DT 30S ribosomal protein S20 300852  
119 4V5K 20 AT, CT 30S RIBOSOMAL PROTEIN S20 300852  
120 4V5Q 20 AT, CT 30S RIBOSOMAL PROTEIN S20 300852  
121 4V7J 19 At, Bt 30S ribosomal protein S20 300852  
122 4V5C 20 AT, CT 30S RIBOSOMAL PROTEIN S20 300852  
123 4V5E 20 AT, CT 30S RIBOSOMAL PROTEIN S20 300852  
124 4L47 20 QT, XT 30S ribosomal protein S20 300852  
125 4V5P 20 AT, CT 30S RIBOSOMAL PROTEIN S20 300852  
126 4V5D 20 AT, CT 30S RIBOSOMAL PROTEIN S20 300852  
127 4V7Z 20 AT, CT 30S ribosomal protein S20 300852  
128 4V8X 20 AT, CT 30S RIBOSOMAL PROTEIN S20 300852  
129 4V5S 20 AT, CT 30S RIBOSOMAL PROTEIN S20 300852  
130 4V9I 20 AT, CT 30S Ribosomal protein S20 300852  
131 1XMO 22 T 30S ribosomal protein S20 274  
132 3T1H 20 T 30S ribosomal protein S20 262724  
133 2UXD 20 T RIBOSOMAL PROTEIN S20 300852  
134 1N33 22 T 30S RIBOSOMAL PROTEIN S20 274  
135 1IBK 21 T 30S RIBOSOMAL PROTEIN S20 274  
136 4V6G 20 AW, CW 30S RIBOSOMAL PROTEIN S20 300852  
137 4V8N 20 AT, CT 30S RIBOSOMAL PROTEIN S20 300852  
138 4V97 20 AT, CT 30S ribosomal protein S20 300852  
139 1HNW 21 T 30S RIBOSOMAL PROTEIN S20 274  
140 4V7M 20 AT, CT 30S ribosomal protein S20 300852  
141 4TUD 20 QT, XT 30S ribosomal protein S20 300852  
142 1IBM 23 T 30S RIBOSOMAL PROTEIN S20 274  
143 4V6A 20 AT, CT 30S ribosomal protein S20 300852  
144 4TUE 20 QT, XT 30S ribosomal protein S20 300852  
145 4TUA 20 QT, XT 30S ribosomal protein S20 300852  
146 4V84 20 AT, CT 30S ribosomal protein Thx 262724  
147 4V7K 19 At, Bt 30S ribosomal protein S20 300852  
148 1HNX 21 T 30S RIBOSOMAL PROTEIN S20 274  
149 4V9Q 50 BT, DT 30S ribosomal protein S20 262724  
150 4TUC 20 QT, XT 30S ribosomal protein S20 300852  
151 4YHH 20 T 30S ribosomal protein S20 300852  
152 4TUB 20 QT, XT 30S ribosomal protein S20 300852  
153 4V9N 23 AT, CT 30S ribosomal protein S20 262724  
154 4P70 20 QT, XT 30S ribosomal protein S20 300852  
155 4V8U 20 AT, CT 30S RIBOSOMAL PROTEIN S20 300852  
156 4LSK 20 QT, XT 30S ribosomal protein S20 300852  
157 4P6F 20 QT, XT 30S ribosomal protein S20 300852  
158 4V67 22 AT, CT 30S ribosomal protein S20 274  
159 4V83 20 AT, CT 30S ribosomal protein S20 262724  
160 4V5F 20 AT, CT 30S RIBOSOMAL PROTEIN S20 300852  
161 1VVJ 20 QT, XT 30S ribosomal protein S20 300852  
162 4LFZ 20 QT, XT 30S ribosomal protein S20 300852  
163 2E5L 21 T 30S ribosomal protein S20 274  
164 2HHH 20 T 30S ribosomal protein S20 300852  
165 4OX9 20 T 30S ribosomal protein S20 300852  
166 2UXB 20 T RIBOSOMAL PROTEIN S20 300852  
167 1I96 20 T 30S RIBOSOMAL PROTEIN S20 274  
168 4V9K 19 AT, CT 30S ribosomal protein S20 262724  
169 1N34 21 T 30S RIBOSOMAL PROTEIN S20 274  
170 4V5A 20 AT, CT 30S RIBOSOMAL PROTEIN S20 300852  
171 4V63 22 AT, CT 30S ribosomal protein S20 262724  
172 4L71 20 QT, XT 30S ribosomal protein S20 300852  
173 4KVB 19 T 30S ribosomal protein S20 262724  
174 4XEJ 47 AS20, BS20 30S ribosomal protein S20 262724  
175 4V7P 20 AT, DT 30S ribosomal protein S20 262724  
176 4V8J 20 AT, CT 30S ribosomal protein S20 300852  
177 1N36 20 T 30S RIBOSOMAL PROTEIN S20 274  
178 2ZM6 20 T 30S ribosomal protein S20 274  
179 4LEL 20 QT, XT 30S ribosomal protein S20 300852  
180 2F4V 21 T 30S ribosomal protein S20 274  
181 4V9L 19 AT, CT 30S ribosomal protein S20 262724  
182 4V5G 20 AT, CT 30S RIBOSOMAL PROTEIN S20 300852  
183 1I97 20 T 30S RIBOSOMAL PROTEIN S20 274  
184 4V9J 19 AT, CT 30S ribosomal protein S20 262724  
185 1I95 20 T 30S RIBOSOMAL PROTEIN S20 274  
186 4V8O 20 AT 30S RIBOSOMAL PROTEIN S20 300852  
187 4V9M 19 AT, CT 30S ribosomal protein S20 262724  
188 4W29 19 AT, CT 30S ribosomal protein S20 262724  
189 4V4Y 22 AW 30S ribosomal protein S20 300852  
190 4V4J 53 u 30S ribosomal protein S20 262724  
191 4V4X 22 AW 30S ribosomal protein S20 300852  
192 4V4Z 23 AW 30S ribosomal protein S20 300852  
193 4V4I 53 u 30S ribosomal protein S20 262724  
194 4V4P 55 BW 30S ribosomal protein S20 300852  
195 4V4R 23 AT 30S ribosomal protein S20 300852  
196 4V4S 23 AT 30S ribosomal protein S20 300852  
197 4V4T 23 AT 30S ribosomal protein S20 300852  
198 4V49 22 AT 30S ribosomal protein S20 562  
199 4V4A 20 AT 30S ribosomal protein S20 562  
200 4V4G 20 AT, CT, ET, GT, IT 30S ribosomal protein S20 562  
201 4V5N 20 AT 30S RIBOSOMAL PROTEIN S20 300852  
202 4V5M 20 AT 30S RIBOSOMAL PROTEIN S20 300852  
203 4V68 13 AT 30S ribosomal protein S20 274  
204 1ML5 25 W 30S RIBOSOMAL PROTEIN S20 562  
205 1JGO 23 W 30S RIBOSOMAL PROTEIN S20 274  
206 1JGP 23 W 30S RIBOSOMAL PROTEIN S20 274  
207 1JGQ 23 W 30S RIBOSOMAL PROTEIN S20 274  
208 4V42 23 AW 30S RIBOSOMAL PROTEIN S20 274  
 
Sequence Clusters for the Sequence Entities in PDB 4JI8
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 207 25
95% 38 208 44
90% 38 208 47
70% 38 208 57
50% 49 293 35
40% 49 293 45
30% 54 345 45
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 209 23
95% 38 209 40
90% 38 209 43
70% 38 209 52
50% 43 287 41
40% 50 346 32
30% 50 347 44
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 18145
95% 38 216 30
90% 38 216 33
70% 43 298 24
50% 43 299 34
40% 43 299 44
30% 43 299 66
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 210 20
95% 38 210 38
90% 38 210 41
70% 38 210 50
50% 43 292 39
40% 43 292 49
30% 48 346 48
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 208 24
95% 38 208 45
90% 38 208 48
70% 38 209 55
50% 38 209 82
40% 38 209 108
30% 38 209 125
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 212 18
95% 40 217 29
90% 40 217 32
70% 40 217 42
50% 48 300 33
40% 48 301 43
30% 48 301 64
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 204 26
95% 38 209 42
90% 38 209 45
70% 38 209 54
50% 38 209 81
40% 38 210 107
30% 43 290 73
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 123 59
95% 38 203 47
90% 38 207 49
70% 38 207 58
50% 38 207 84
40% 38 207 111
30% 38 207 128
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 134 56
95% 35 183 53
90% 35 183 56
70% 35 183 70
50% 35 183 115
40% 35 183 138
30% 35 183 156
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 39 212 17
95% 39 212 33
90% 39 212 37
70% 39 212 46
50% 44 290 38
40% 44 290 48
30% 44 290 70
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 209 21
95% 38 210 35
90% 38 210 39
70% 38 210 48
50% 43 286 43
40% 43 287 51
30% 43 287 72
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 159 50
95% 38 208 43
90% 38 208 46
70% 38 208 56
50% 38 208 83
40% 38 208 109
30% 38 208 126
Entity #21: Chains: U - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 199 31
95% 38 199 49
90% 38 199 51
70% 38 199 62
50% 38 199 94
40% 38 199 117
30% 38 199 141
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 182 35
95% 35 182 54
90% 35 182 57
70% 35 182 71
50% 36 223 76
40% 36 223 101
30% 36 223 120
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 202 27
95% 38 210 36
90% 38 210 40
70% 38 210 49
50% 43 287 40
40% 43 288 50
30% 43 288 71
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 209 22
95% 38 209 39
90% 38 209 42
70% 38 209 51
50% 44 291 37
40% 44 291 47
30% 44 293 69
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 39 214 15
95% 45 220 26
90% 45 220 31
70% 45 220 41
50% 45 220 78
40% 45 220 102
30% 51 259 82
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 39 213 16
95% 39 214 32
90% 39 214 35
70% 39 214 44
50% 44 257 52
40% 44 258 66
30% 44 258 86
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 39 209 19
95% 39 209 37
90% 39 213 36
70% 39 213 45
50% 46 293 36
40% 47 295 46
30% 53 350 42
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 119 80
95% 38 209 41
90% 38 209 44
70% 38 209 53
50% 43 287 42
40% 43 287 52
30% 48 341 49
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.