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Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Sequence Clustering and Redundancy Reduction Results
4JI8
Cluster # 114 Members. Sequence cutoff: 40% Cluster size: 198 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4Y4O 51 1t, 2t 30S ribosomal protein S20 300852  
2 4W2F 20 AT, CT 30S Ribosomal Protein S20 300852  
3 4Y4P 51 1t, 2t 30S ribosomal protein S20 300852  
4 4W2G 20 AT, CT 30S Ribosomal Protein S20 300852  
5 4LFB 20 T ribosomal protein S20 300852  
6 1VY4 20 AT, CT 30S ribosomal protein S20 300852  
7 4W2I 20 AT, CT 30S Ribosomal Protein S20 300852  
8 1VY5 20 AT, CT 30S ribosomal protein S20 300852  
9 4WQF 53 BT, DT 30S ribosomal protein S20 300852  
10 4W2H 20 AT, CT 30S Ribosomal Protein S20 300852  
11 4WPO 53 BT, DT 30S ribosomal protein S20 300852  
12 4V8I 20 AT, CT 30S Ribosomal Protein S20 274  
13 4JI1 20 T RIBOSOMAL PROTEIN S20 300852  
14 4DR6 20 T 30S ribosomal protein S20 300852  
15 4LF7 20 T ribosomal protein S20 300852  
16 4LF8 20 T ribosomal protein S20 300852  
17 4WQU 53 BT, DT 30S ribosomal protein S20 300852  
18 2VQE 20 T 30S RIBOSOMAL PROTEIN S20 300852  
19 2UUB 20 T 30S RIBOSOMAL PROTEIN S20 300852  
20 4DV6 20 T ribosomal protein S20 300852  
21 4JYA 20 T 30S ribosomal protein S20 300852  
22 4DR5 20 T 30S ribosomal protein S20 300852  
23 4KHP 20 T 30S Ribosomal protein S20 300852  
24 4DR2 20 T 30S ribosomal protein S20 300852  
25 4LF9 20 T ribosomal protein S20 300852  
26 4WQY 53 BT, DT 30S ribosomal protein S20 300852  
27 4DUY 20 T ribosomal protein S20 300852  
28 4DV7 20 T ribosomal protein S20 300852  
29 4V9H 14 AT 30S ribosomal protein S20 300852  
30 4V8D 20 AW, CW 30S RIBOSOMAL PROTEIN S20 300852  
31 4DR3 20 T 30S ribosomal protein S20 300852  
32 4V90 20 AT 30S RIBOSOMAL PROTEIN S20 300852  
33 4JI3 20 T RIBOSOMAL PROTEIN S20 300852  
34 4JI6 20 T RIBOSOMAL PROTEIN S20 300852  
35 4JI8 20 T RIBOSOMAL PROTEIN S20 300852  
36 2UXC 20 T RIBOSOMAL PROTEIN S20 300852  
37 4V9R 20 AT, CT 30S Ribosomal Protein S20 274  
38 4B3M 20 T 30S RIBOSOMAL PROTEIN S20 300852  
39 4LF4 20 T ribosomal protein S20 300852  
40 4LF6 20 T ribosomal protein S20 300852  
41 4JI7 20 T RIBOSOMAL PROTEIN S20 300852  
42 4B3T 20 T 30S RIBOSOMAL PROTEIN S20 300852  
43 4V8B 20 AW, CW 30S RIBOSOMAL PROTEIN S20 300852  
44 2VQF 20 T 30S RIBOSOMAL PROTEIN S20 300852  
45 2UUA 20 T 30S RIBOSOMAL PROTEIN S20 300852  
46 4V87 50 BW, CW 30S RIBOSOMAL PROTEIN S20 300852  
47 4V95 20 AT, CT 30S Ribosomal Protein S20 274  
48 1VY7 20 AT, CT 30S ribosomal protein S20 300852  
49 4B3R 20 T 30S RIBOSOMAL PROTEIN S20 300852  
50 4LNT 20 QT, XT 30S ribosomal protein S20 300852  
51 4DR1 20 T 30S ribosomal protein S20 300852  
52 4LFA 20 T ribosomal protein S20 300852  
53 4DV4 20 T ribosomal protein S20 300852  
54 4JI0 20 T ribosomal protein S20 300852  
55 4V9S 20 AT, CT 30S Ribosomal Protein S20 274  
56 4JI2 20 T RIBOSOMAL PROTEIN S20 300852  
57 4JV5 20 T 30S ribosomal protein 20 300852  
58 4DR7 20 T 30S ribosomal protein S20 300852  
59 1J5E 20 T 30S RIBOSOMAL PROTEIN S20 274  
60 4GKK 20 T 30S ribosomal protein S20 300852  
61 4DUZ 20 T ribosomal protein S20 300852  
62 4V8G 20 AT, CT 30S Ribosomal Protein S20 300852  
63 4GKJ 20 T 30S ribosomal protein S20 300852  
64 4DV3 20 T ribosomal protein S20 300852  
65 4DV5 20 T ribosomal protein S20 300852  
66 2UUC 20 T 30S RIBOSOMAL PROTEIN S20 300852  
67 4LFC 20 T ribosomal protein S20 300852  
68 1FJG 21 T 30S RIBOSOMAL PROTEIN S20 274  
69 3T1Y 20 T 30S ribosomal protein S20 262724  
70 4JI4 20 T RIBOSOMAL PROTEIN S20 300852  
71 1VY6 20 AT, CT 30S ribosomal protein S20 300852  
72 1XMQ 22 T 30S Ribosomal Protein S20 274  
73 4DV0 20 T ribosomal protein S20 300852  
74 4V9B 20 AW, CW 30S RIBOSOMAL PROTEIN S20 300852  
75 4V6F 50 BW, CW 30S ribosomal protein S20 300852  
76 4V8F 50 BW, CW 30S RIBOSOMAL PROTEIN S20 300852  
77 4B3S 20 T 30S RIBOSOMAL PROTEIN S20 300852  
78 4DV2 20 T ribosomal protein S20 300852  
79 4DV1 20 T ribosomal protein S20 300852  
80 1N32 22 T 30S RIBOSOMAL PROTEIN S20 274  
81 1I94 20 T 30S RIBOSOMAL PROTEIN S20 274  
82 4V8H 20 AT, CT 30S Ribosomal Protein S20 300852  
83 4JI5 20 T RIBOSOMAL PROTEIN S20 300852  
84 4K0K 20 T 30S ribosomal protein S20 300852  
85 4W2E 53 t 30S ribosomal protein S20 300852  
86 4V8C 50 CW, DW 30S RIBOSOMAL PROTEIN S20 300852  
87 4LF5 20 T ribosomal protein S20 300852  
88 4V9A 20 AW, CW 30S RIBOSOMAL PROTEIN S20 300852  
89 4V5J 20 AT, CT 30S RIBOSOMAL PROTEIN S20 300852  
90 4V7Y 20 AT, CT 30S ribosomal protein S20 300852  
91 4V8E 50 BW, DW 30S RIBOSOMAL PROTEIN S20 300852  
92 4DR4 20 T 30S ribosomal protein S20 300852  
93 3OTO 20 T 30S RIBOSOMAL PROTEIN S20 300852  
94 2UU9 20 T 30S RIBOSOMAL PROTEIN S20 300852  
95 4V8Q 54 BT 30S RIBOSOMAL PROTEIN S20 300852  
96 1HR0 21 T 30S RIBOSOMAL PROTEIN S20 274  
97 4AQY 20 T 30S RIBOSOMAL PROTEIN S20 274  
98 4NXM 20 T ribosomal protein S20 300852  
99 4V5L 20 AT 30S RIBOSOMAL PROTEIN S20 300852  
100 4V7X 20 AT, CT 30S ribosomal protein S20 300852  
101 1IBL 23 T 30S RIBOSOMAL PROTEIN S20 274  
102 4V7W 20 AT, CT 30S ribosomal protein S20 300852  
103 4WUS 21 U 30S ribosomal protein S20 300852  
104 4WT8 20 U 30S ribosomal protein S20 300852  
105 4NXN 20 T ribosomal protein S20 300852  
106 1XNR 22 T 16S Ribosomal protein S20 274  
107 4LT8 20 QT, XT 30S ribosomal protein S20 300852  
108 4V51 20 AT, CT 30S RIBOSOMAL PROTEIN S20 300852  
109 4V7L 20 AT, CT 30S ribosomal protein S20 300852  
110 4V5R 20 AT, CT 30S RIBOSOMAL PROTEIN S20 300852  
111 1HNZ 21 T 30S RIBOSOMAL PROTEIN S20 274  
112 1XNQ 22 T Ribosomal protein S20 274  
113 4V8A 50 CT, DT 30S ribosomal protein S20 300852  
114 4V5K 20 AT, CT 30S RIBOSOMAL PROTEIN S20 300852  
115 4V5Q 20 AT, CT 30S RIBOSOMAL PROTEIN S20 300852  
116 4V7J 19 At, Bt 30S ribosomal protein S20 300852  
117 4V5C 20 AT, CT 30S RIBOSOMAL PROTEIN S20 300852  
118 4V5E 20 AT, CT 30S RIBOSOMAL PROTEIN S20 300852  
119 4L47 20 QT, XT 30S ribosomal protein S20 300852  
120 4V5P 20 AT, CT 30S RIBOSOMAL PROTEIN S20 300852  
121 4V5D 20 AT, CT 30S RIBOSOMAL PROTEIN S20 300852  
122 4V7Z 20 AT, CT 30S ribosomal protein S20 300852  
123 4V8X 20 AT, CT 30S RIBOSOMAL PROTEIN S20 300852  
124 4V5S 20 AT, CT 30S RIBOSOMAL PROTEIN S20 300852  
125 4V9I 20 AT, CT 30S Ribosomal protein S20 300852  
126 1XMO 22 T 30S ribosomal protein S20 274  
127 3T1H 20 T 30S ribosomal protein S20 262724  
128 2UXD 20 T RIBOSOMAL PROTEIN S20 300852  
129 1N33 22 T 30S RIBOSOMAL PROTEIN S20 274  
130 1IBK 21 T 30S RIBOSOMAL PROTEIN S20 274  
131 4V6G 20 AW, CW 30S RIBOSOMAL PROTEIN S20 300852  
132 4V8N 20 AT, CT 30S RIBOSOMAL PROTEIN S20 300852  
133 4V97 20 AT, CT 30S ribosomal protein S20 300852  
134 1HNW 21 T 30S RIBOSOMAL PROTEIN S20 274  
135 4V7M 20 AT, CT 30S ribosomal protein S20 300852  
136 1IBM 23 T 30S RIBOSOMAL PROTEIN S20 274  
137 4V6A 20 AT, CT 30S ribosomal protein S20 300852  
138 4V84 20 AT, CT 30S ribosomal protein Thx 262724  
139 4V7K 19 At, Bt 30S ribosomal protein S20 300852  
140 1HNX 21 T 30S RIBOSOMAL PROTEIN S20 274  
141 4V9Q 50 BT, DT 30S ribosomal protein S20 262724  
142 4YHH 20 T 30S ribosomal protein S20 300852  
143 4V9N 23 AT, CT 30S ribosomal protein S20 262724  
144 4P70 20 QT, XT 30S ribosomal protein S20 300852  
145 4V8U 20 AT, CT 30S RIBOSOMAL PROTEIN S20 300852  
146 4LSK 20 QT, XT 30S ribosomal protein S20 300852  
147 4P6F 20 QT, XT 30S ribosomal protein S20 300852  
148 4V67 22 AT, CT 30S ribosomal protein S20 274  
149 4V83 20 AT, CT 30S ribosomal protein S20 262724  
150 4V5F 20 AT, CT 30S RIBOSOMAL PROTEIN S20 300852  
151 1VVJ 20 QT, XT 30S ribosomal protein S20 300852  
152 4LFZ 20 QT, XT 30S ribosomal protein S20 300852  
153 2E5L 21 T 30S ribosomal protein S20 274  
154 2HHH 20 T 30S ribosomal protein S20 300852  
155 4OX9 20 T 30S ribosomal protein S20 300852  
156 2UXB 20 T RIBOSOMAL PROTEIN S20 300852  
157 1I96 20 T 30S RIBOSOMAL PROTEIN S20 274  
158 4V9K 19 AT, CT 30S ribosomal protein S20 262724  
159 1N34 21 T 30S RIBOSOMAL PROTEIN S20 274  
160 4V5A 20 AT, CT 30S RIBOSOMAL PROTEIN S20 300852  
161 4V63 22 AT, CT 30S ribosomal protein S20 262724  
162 4L71 20 QT, XT 30S ribosomal protein S20 300852  
163 4KVB 19 T 30S ribosomal protein S20 262724  
164 4XEJ 47 AS20, BS20 30S ribosomal protein S20 262724  
165 4V7P 20 AT, DT 30S ribosomal protein S20 262724  
166 4V8J 20 AT, CT 30S ribosomal protein S20 300852  
167 1N36 20 T 30S RIBOSOMAL PROTEIN S20 274  
168 2ZM6 20 T 30S ribosomal protein S20 274  
169 4LEL 20 QT, XT 30S ribosomal protein S20 300852  
170 2F4V 21 T 30S ribosomal protein S20 274  
171 4V9L 19 AT, CT 30S ribosomal protein S20 262724  
172 4V5G 20 AT, CT 30S RIBOSOMAL PROTEIN S20 300852  
173 1I97 20 T 30S RIBOSOMAL PROTEIN S20 274  
174 4V9J 19 AT, CT 30S ribosomal protein S20 262724  
175 1I95 20 T 30S RIBOSOMAL PROTEIN S20 274  
176 4V8O 20 AT 30S RIBOSOMAL PROTEIN S20 300852  
177 4V9M 19 AT, CT 30S ribosomal protein S20 262724  
178 4W29 19 AT, CT 30S ribosomal protein S20 262724  
179 4V4Y 22 AW 30S ribosomal protein S20 300852  
180 4V4J 53 u 30S ribosomal protein S20 262724  
181 4V4X 22 AW 30S ribosomal protein S20 300852  
182 4V4Z 23 AW 30S ribosomal protein S20 300852  
183 4V4I 53 u 30S ribosomal protein S20 262724  
184 4V4P 55 BW 30S ribosomal protein S20 300852  
185 4V4R 23 AT 30S ribosomal protein S20 300852  
186 4V4S 23 AT 30S ribosomal protein S20 300852  
187 4V4T 23 AT 30S ribosomal protein S20 300852  
188 4V49 22 AT 30S ribosomal protein S20 562  
189 4V4A 20 AT 30S ribosomal protein S20 562  
190 4V4G 20 AT, CT, ET, GT, IT 30S ribosomal protein S20 562  
191 4V5N 20 AT 30S RIBOSOMAL PROTEIN S20 300852  
192 4V5M 20 AT 30S RIBOSOMAL PROTEIN S20 300852  
193 4V68 13 AT 30S ribosomal protein S20 274  
194 1ML5 25 W 30S RIBOSOMAL PROTEIN S20 562  
195 1JGO 23 W 30S RIBOSOMAL PROTEIN S20 274  
196 1JGP 23 W 30S RIBOSOMAL PROTEIN S20 274  
197 1JGQ 23 W 30S RIBOSOMAL PROTEIN S20 274  
198 4V42 23 AW 30S RIBOSOMAL PROTEIN S20 274  
 
Sequence Clusters for the Sequence Entities in PDB 4JI8
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 197 29
95% 35 198 45
90% 35 198 47
70% 35 198 60
50% 46 283 35
40% 46 283 45
30% 51 334 46
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 199 26
95% 35 199 40
90% 35 199 42
70% 35 199 54
50% 40 277 41
40% 47 335 35
30% 47 336 45
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 18004
95% 35 206 31
90% 35 206 33
70% 40 288 24
50% 40 289 34
40% 40 289 44
30% 40 289 69
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 200 23
95% 35 200 38
90% 35 200 40
70% 35 200 51
50% 40 282 39
40% 40 282 50
30% 45 335 49
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 198 27
95% 35 198 46
90% 35 198 48
70% 35 199 57
50% 35 199 90
40% 35 199 113
30% 35 199 137
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 202 21
95% 37 207 30
90% 37 207 32
70% 37 207 43
50% 45 290 33
40% 45 291 43
30% 45 291 67
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 194 30
95% 35 199 42
90% 35 199 44
70% 35 199 56
50% 35 199 89
40% 35 200 112
30% 40 280 76
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 113 66
95% 35 193 50
90% 35 197 49
70% 35 197 61
50% 35 197 93
40% 35 197 116
30% 35 197 139
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 125 59
95% 32 174 71
90% 32 174 75
70% 32 174 89
50% 32 174 130
40% 32 174 148
30% 32 174 164
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 202 20
95% 36 202 33
90% 36 202 36
70% 36 202 47
50% 41 280 38
40% 41 280 49
30% 41 280 73
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 199 24
95% 35 200 35
90% 35 200 38
70% 35 200 48
50% 40 276 43
40% 40 277 52
30% 40 277 75
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 149 54
95% 35 198 44
90% 35 198 46
70% 35 198 59
50% 35 198 92
40% 35 198 114
30% 35 198 138
Entity #21: Chains: U - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 189 32
95% 35 189 52
90% 35 189 55
70% 35 189 67
50% 35 189 112
40% 35 189 135
30% 35 189 153
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 173 48
95% 32 173 72
90% 32 173 76
70% 32 173 91
50% 33 214 77
40% 33 214 102
30% 33 214 123
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 192 31
95% 35 200 36
90% 35 200 39
70% 35 200 49
50% 40 277 40
40% 40 278 51
30% 40 278 74
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 199 25
95% 35 199 39
90% 35 199 41
70% 35 199 52
50% 41 281 37
40% 41 281 48
30% 41 283 72
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 204 18
95% 42 210 29
90% 42 210 31
70% 42 210 42
50% 42 210 83
40% 42 210 107
30% 48 249 87
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 203 19
95% 36 204 32
90% 36 204 34
70% 36 204 44
50% 41 247 55
40% 41 248 70
30% 41 248 94
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 199 22
95% 36 199 37
90% 36 203 35
70% 36 203 45
50% 43 283 36
40% 44 285 46
30% 50 339 44
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 109 86
95% 35 199 41
90% 35 199 43
70% 35 199 55
50% 40 277 42
40% 40 277 54
30% 45 330 50
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.