Sequence Similarity Clusters for the Entities in PDB 4JI8

Entity #1 | Chains: A
16S rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 237 25
95 % 47 238 38
90 % 47 238 43
70 % 47 238 53
50 % 59 330 30
40 % 59 330 40
30 % 64 396 41
Entity #11 | Chains: K
RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 239 23
95 % 47 239 34
90 % 47 239 39
70 % 47 239 48
50 % 53 324 38
40 % 60 397 27
30 % 60 398 39
Entity #12 | Chains: L
RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 19424
95 % 47 246 22
90 % 47 246 27
70 % 53 335 23
50 % 53 336 29
40 % 53 336 39
30 % 53 336 56
Entity #13 | Chains: M
RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 240 20
95 % 47 240 32
90 % 47 240 37
70 % 47 240 46
50 % 53 329 35
40 % 53 329 46
30 % 58 397 46
Entity #14 | Chains: N
RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 238 24
95 % 47 238 39
90 % 47 238 44
70 % 47 239 51
50 % 47 239 82
40 % 47 239 107
30 % 47 239 123
Entity #15 | Chains: O
RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 242 16
95 % 49 247 21
90 % 49 247 26
70 % 49 247 37
50 % 58 337 27
40 % 58 338 38
30 % 58 338 54
Entity #16 | Chains: P
RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 234 26
95 % 47 239 36
90 % 47 239 41
70 % 47 239 50
50 % 47 239 81
40 % 47 240 106
30 % 53 327 64
Entity #17 | Chains: Q
RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 39 149 57
95 % 47 233 40
90 % 47 237 45
70 % 47 237 54
50 % 47 237 87
40 % 47 237 113
30 % 47 237 128
Entity #18 | Chains: R
RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 156 56
95 % 41 205 63
90 % 41 205 66
70 % 41 205 75
50 % 41 205 109
40 % 41 205 129
30 % 41 205 145
Entity #19 | Chains: S
RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 48 242 15
95 % 48 242 26
90 % 48 242 31
70 % 48 242 42
50 % 54 327 34
40 % 54 327 44
30 % 54 327 60
Entity #2 | Chains: B
RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 239 17
95 % 47 240 27
90 % 47 240 33
70 % 47 240 43
50 % 53 323 37
40 % 53 324 47
30 % 53 324 63
Entity #20 | Chains: T
RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 46 188 48
95 % 47 238 37
90 % 47 238 42
70 % 47 238 52
50 % 47 238 83
40 % 47 238 109
30 % 47 238 125
Entity #21 | Chains: U
RIBOSOMAL PROTEIN THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 229 39
95 % 47 229 54
90 % 47 229 58
70 % 47 229 69
50 % 47 229 96
40 % 47 229 118
30 % 47 229 132
Entity #3 | Chains: C
RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 204 43
95 % 41 204 64
90 % 41 204 67
70 % 41 204 76
50 % 43 252 68
40 % 43 252 93
30 % 43 252 110
Entity #4 | Chains: D
RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 232 27
95 % 47 240 28
90 % 47 240 34
70 % 47 240 44
50 % 53 324 36
40 % 53 325 45
30 % 53 325 62
Entity #5 | Chains: E
RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 239 22
95 % 47 239 33
90 % 47 239 38
70 % 47 239 47
50 % 54 328 33
40 % 54 328 43
30 % 54 330 59
Entity #6 | Chains: F
RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 48 244 13
95 % 54 250 20
90 % 54 250 25
70 % 54 250 35
50 % 54 250 70
40 % 54 250 94
30 % 60 289 80
Entity #7 | Chains: G
RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 48 243 14
95 % 48 244 25
90 % 48 244 29
70 % 48 244 40
50 % 53 289 50
40 % 53 290 62
30 % 53 290 83
Entity #8 | Chains: H
RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 48 239 19
95 % 48 239 31
90 % 48 243 30
70 % 48 243 41
50 % 56 330 31
40 % 57 332 41
30 % 63 401 37
Entity #9 | Chains: I
RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 43 149 70
95 % 47 239 35
90 % 47 239 40
70 % 47 239 49
50 % 53 324 39
40 % 53 324 49
30 % 58 392 47

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4Y4O 51 1t, 2t 30S ribosomal protein S20 274
2 4W2F 20 AT, CT 30S Ribosomal Protein S20 274
3 4Y4P 51 1t, 2t 30S ribosomal protein S20 274
4 5FDV 52 1t, 2t 30S ribosomal protein S20 274
5 4W2G 20 AT, CT 30S Ribosomal Protein S20 274
6 4LFB 20 T ribosomal protein S20 274
7 1VY4 20 AT, CT 30S ribosomal protein S20 274
8 5FDU 51 1t, 2t 30S ribosomal protein S20 274
9 4W2I 20 AT, CT 30S Ribosomal Protein S20 274
10 1VY5 20 AT, CT 30S ribosomal protein S20 274
11 4WQF 53 BT, DT 30S ribosomal protein S20 274
12 4W2H 20 AT, CT 30S Ribosomal Protein S20 274
13 4WPO 53 BT, DT 30S ribosomal protein S20 274
14 4V8I 20 AT, CT 30S Ribosomal Protein S20 274
15 4JI1 20 T RIBOSOMAL PROTEIN S20 274
16 4Z3S 51 1t, 2t 30S ribosomal protein S20 274
17 5DOY 51 1t, 2t 30S Ribosomal Protein S20 274
18 4DR6 20 T 30S ribosomal protein S20 274
19 4LF7 20 T ribosomal protein S20 274
20 4LF8 20 T ribosomal protein S20 274
21 4WSD 20 BA, BI 30S ribosomal protein S20 274
22 4WQU 53 BT, DT 30S ribosomal protein S20 274
23 5E81 20 BA, BI 30S ribosomal protein S20 274
24 2VQE 20 T 30S RIBOSOMAL PROTEIN S20 274
25 4Z8C 51 1t, 2t 30S ribosomal protein S20 274
26 2UUB 20 T 30S RIBOSOMAL PROTEIN S20 274
27 4DV6 20 T ribosomal protein S20 274
28 4JYA 20 T 30S ribosomal protein S20 274
29 4DR5 20 T 30S ribosomal protein S20 274
30 4KHP 20 T 30S Ribosomal protein S20 274
31 4DR2 20 T 30S ribosomal protein S20 274
32 4WRO 24 BI 30S ribosomal protein S20 274
33 4WQ1 20 BA, BI 30S ribosomal protein S20 274
34 4LF9 20 T ribosomal protein S20 274
35 4WQY 53 BT, DT 30S ribosomal protein S20 274
36 4DUY 20 T ribosomal protein S20 274
37 4DV7 20 T ribosomal protein S20 274
38 4WRA 20 BA, BI 30S ribosomal protein S20 274
39 4X64 20 T 30S ribosomal protein S20 274
40 4V9H 14 AT 30S ribosomal protein S20 274
41 4V8D 20 AW, CW 30S RIBOSOMAL PROTEIN S20 274
42 4DR3 20 T 30S ribosomal protein S20 274
43 4V90 20 AT 30S RIBOSOMAL PROTEIN S20 274
44 4JI3 20 T RIBOSOMAL PROTEIN S20 274
45 4WQR 20 BA, BI 30S ribosomal protein S20 274
46 4JI6 20 T RIBOSOMAL PROTEIN S20 274
47 4JI8 20 T RIBOSOMAL PROTEIN S20 274
48 2UXC 20 T RIBOSOMAL PROTEIN S20 274
49 4V9R 20 AT, CT 30S Ribosomal Protein S20 274
50 4B3M 20 T 30S RIBOSOMAL PROTEIN S20 274
51 5EL6 20 BA, BI 30S ribosomal protein S20 274
52 5EL7 20 BA, BI 30S ribosomal protein S20 274
53 4LF4 20 T ribosomal protein S20 274
54 4LF6 20 T ribosomal protein S20 274
55 4JI7 20 T RIBOSOMAL PROTEIN S20 274
56 4WU1 20 BA, BI 30S ribosomal protein S20 274
57 5EL4 20 BA, BI 30S ribosomal protein S20 274
58 4B3T 20 T 30S RIBOSOMAL PROTEIN S20 274
59 4WR6 20 BA, BI 30S ribosomal protein S20 274
60 4V8B 20 AW, CW 30S RIBOSOMAL PROTEIN S20 274
61 2VQF 20 T 30S RIBOSOMAL PROTEIN S20 274
62 2UUA 20 T 30S RIBOSOMAL PROTEIN S20 274
63 4V87 50 BW, CW 30S RIBOSOMAL PROTEIN S20 274
64 4V95 20 AT, CT 30S Ribosomal Protein S20 274
65 1VY7 20 AT, CT 30S ribosomal protein S20 274
66 5E7K 20 BA, BI 30S ribosomal protein S20 274
67 5EL5 20 BA, BI 30S ribosomal protein S20 274
68 4B3R 20 T 30S RIBOSOMAL PROTEIN S20 274
69 4LNT 20 QT, XT 30S ribosomal protein S20 274
70 4DR1 20 T 30S ribosomal protein S20 274
71 4LFA 20 T ribosomal protein S20 274
72 4DV4 20 T ribosomal protein S20 274
73 4YZV 20 QT, XT 30S ribosomal protein S20 274
74 4JI0 20 T ribosomal protein S20 274
75 4V9S 20 AT, CT 30S Ribosomal Protein S20 274
76 4JI2 20 T RIBOSOMAL PROTEIN S20 274
77 4JV5 20 T 30S ribosomal protein 20 274
78 4DR7 20 T 30S ribosomal protein S20 274
79 1J5E 20 T 30S RIBOSOMAL PROTEIN S20 274
80 4GKK 20 T 30S ribosomal protein S20 274
81 4DUZ 20 T ribosomal protein S20 274
82 4X65 20 T 30S ribosomal protein S20 274
83 4V8G 20 AT, CT 30S Ribosomal Protein S20 274
84 4GKJ 20 T 30S ribosomal protein S20 274
85 4DV3 20 T ribosomal protein S20 274
86 4DV5 20 T ribosomal protein S20 274
87 2UUC 20 T 30S RIBOSOMAL PROTEIN S20 274
88 4LFC 20 T ribosomal protein S20 274
89 1FJG 21 T 30S RIBOSOMAL PROTEIN S20 274
90 3T1Y 20 T 30S ribosomal protein S20 274
91 4WZO 20 BA, BI 30S ribosomal protein S20 274
92 4JI4 20 T RIBOSOMAL PROTEIN S20 274
93 1VY6 20 AT, CT 30S ribosomal protein S20 274
94 1XMQ 22 T 30S Ribosomal Protein S20 274
95 4DV0 20 T ribosomal protein S20 274
96 4V9B 20 AW, CW 30S RIBOSOMAL PROTEIN S20 274
97 4V6F 50 BW, CW 30S ribosomal protein S20 274
98 4X62 20 T 30S ribosomal protein S20 274
99 4V8F 50 BW, CW 30S RIBOSOMAL PROTEIN S20 274
100 4B3S 20 T 30S RIBOSOMAL PROTEIN S20 274
101 4DV2 20 T ribosomal protein S20 274
102 4DV1 20 T ribosomal protein S20 274
103 1N32 22 T 30S RIBOSOMAL PROTEIN S20 274
104 5F8K 51 1t, 2t 30S ribosomal protein S20 274
105 1I94 20 T 30S RIBOSOMAL PROTEIN S20 274
106 4V8H 20 AT, CT 30S Ribosomal Protein S20 274
107 4JI5 20 T RIBOSOMAL PROTEIN S20 274
108 4K0K 20 T 30S ribosomal protein S20 274
109 4W2E 53 t 30S ribosomal protein S20 274
110 4V8C 50 CW, DW 30S RIBOSOMAL PROTEIN S20 274
111 5BR8 20 T 30S ribosomal protein S20 274
112 4LF5 20 T ribosomal protein S20 274
113 4V9A 20 AW, CW 30S RIBOSOMAL PROTEIN S20 274
114 4V5J 20 AT, CT 30S RIBOSOMAL PROTEIN S20 274
115 4V7Y 20 AT, CT 30S ribosomal protein S20 274
116 4V8E 50 BW, DW 30S RIBOSOMAL PROTEIN S20 274
117 4DR4 20 T 30S ribosomal protein S20 274
118 4WZD 20 BA, BI 30S ribosomal protein S20 274
119 3OTO 20 T 30S RIBOSOMAL PROTEIN S20 274
120 4X66 20 T 30S ribosomal protein S20 274
121 2UU9 20 T 30S RIBOSOMAL PROTEIN S20 274
122 4V8Q 54 BT 30S RIBOSOMAL PROTEIN S20 274
123 1HR0 21 T 30S RIBOSOMAL PROTEIN S20 274
124 4AQY 20 T 30S RIBOSOMAL PROTEIN S20 274
125 4W4G 20 QT, XT 30S ribosomal protein S20 274
126 4NXM 20 T ribosomal protein S20 274
127 4V5L 20 AT 30S RIBOSOMAL PROTEIN S20 274
128 4YPB 20 QT, XT 30S ribosomal protein S20 274
129 4V7X 20 AT, CT 30S ribosomal protein S20 274
130 4ZER 51 1t, 2t 30S ribosomal protein S20 274
131 1IBL 23 T 30S RIBOSOMAL PROTEIN S20 274
132 4V7W 20 AT, CT 30S ribosomal protein S20 274
133 4WT1 20 BA, BI 30S ribosomal protein S20 274
134 4WT8 20 AU, BU 30S ribosomal protein S20 274
135 5DOX 51 1t, 2t 30S ribosomal protein S20 274
136 4NXN 20 T ribosomal protein S20 274
137 1XNR 22 T 16S Ribosomal protein S20 274
138 4LT8 20 QT, XT 30S ribosomal protein S20 274
139 4V51 20 AT, CT 30S RIBOSOMAL PROTEIN S20 274
140 4V7L 20 AT, CT 30S ribosomal protein S20 274
141 4V5R 20 AT, CT 30S RIBOSOMAL PROTEIN S20 274
142 1HNZ 21 T 30S RIBOSOMAL PROTEIN S20 274
143 1XNQ 22 T Ribosomal protein S20 274
144 4V8A 50 CT, DT 30S ribosomal protein S20 274
145 4V5K 20 AT, CT 30S RIBOSOMAL PROTEIN S20 274
146 4V5Q 20 AT, CT 30S RIBOSOMAL PROTEIN S20 274
147 4V7J 19 At, Bt 30S ribosomal protein S20 274
148 4V5C 20 AT, CT 30S RIBOSOMAL PROTEIN S20 274
149 4V5E 20 AT, CT 30S RIBOSOMAL PROTEIN S20 274
150 4L47 20 QT, XT 30S ribosomal protein S20 274
151 4V5P 20 AT, CT 30S RIBOSOMAL PROTEIN S20 274
152 4V5D 20 AT, CT 30S RIBOSOMAL PROTEIN S20 274
153 4V7Z 20 AT, CT 30S ribosomal protein S20 274
154 4V8X 20 AT, CT 30S RIBOSOMAL PROTEIN S20 274
155 4V5S 20 AT, CT 30S RIBOSOMAL PROTEIN S20 274
156 4V9I 20 AT, CT 30S Ribosomal protein S20 274
157 1XMO 22 T 30S ribosomal protein S20 274
158 3T1H 20 T 30S ribosomal protein S20 274
159 2UXD 20 T RIBOSOMAL PROTEIN S20 274
160 1N33 22 T 30S RIBOSOMAL PROTEIN S20 274
161 1IBK 21 T 30S RIBOSOMAL PROTEIN S20 274
162 4V6G 20 AW, CW 30S RIBOSOMAL PROTEIN S20 274
163 4V8N 20 AT, CT 30S RIBOSOMAL PROTEIN S20 274
164 4V97 20 AT, CT 30S ribosomal protein S20 274
165 1HNW 21 T 30S RIBOSOMAL PROTEIN S20 274
166 4V7M 20 AT, CT 30S ribosomal protein S20 274
167 4WSM 20 BA, BI 30S ribosomal protein S20 274
168 4TUD 20 QT, XT 30S ribosomal protein S20 274
169 1IBM 23 T 30S RIBOSOMAL PROTEIN S20 274
170 4V6A 20 AT, CT 30S ribosomal protein S20 274
171 4TUE 20 QT, XT 30S ribosomal protein S20 274
172 4TUA 20 QT, XT 30S ribosomal protein S20 274
173 4V84 20 AT, CT 30S ribosomal protein Thx 274
174 4V7K 19 At, Bt 30S ribosomal protein S20 274
175 1HNX 21 T 30S RIBOSOMAL PROTEIN S20 274
176 4V9Q 50 BT, DT 30S ribosomal protein S20 274
177 4TUC 20 QT, XT 30S ribosomal protein S20 274
178 4YHH 20 T 30S ribosomal protein S20 274
179 4TUB 20 QT, XT 30S ribosomal protein S20 274
180 4V9N 23 AT, CT 30S ribosomal protein S20 274
181 4P70 20 QT, XT 30S ribosomal protein S20 274
182 4V8U 20 AT, CT 30S RIBOSOMAL PROTEIN S20 274
183 4LSK 20 QT, XT 30S ribosomal protein S20 274
184 4P6F 20 QT, XT 30S ribosomal protein S20 274
185 4V67 22 AT, CT 30S ribosomal protein S20 274
186 4V83 20 AT, CT 30S ribosomal protein S20 274
187 4V5F 20 AT, CT 30S RIBOSOMAL PROTEIN S20 274
188 1VVJ 20 QT, XT 30S ribosomal protein S20 274
189 4LFZ 20 QT, XT 30S ribosomal protein S20 274
190 2E5L 21 T 30S ribosomal protein S20 274
191 2HHH 20 T 30S ribosomal protein S20 274
192 4OX9 20 T 30S ribosomal protein S20 274
193 2UXB 20 T RIBOSOMAL PROTEIN S20 274
194 1I96 20 T 30S RIBOSOMAL PROTEIN S20 274
195 4V9K 19 AT, CT 30S ribosomal protein S20 274
196 1N34 21 T 30S RIBOSOMAL PROTEIN S20 274
197 4V5A 20 AT, CT 30S RIBOSOMAL PROTEIN S20 274
198 4V63 22 AT, CT 30S ribosomal protein S20 274
199 4L71 20 QT, XT 30S ribosomal protein S20 274
200 4KVB 19 T 30S ribosomal protein S20 274
201 4XEJ 47 AS20, BS20 30S ribosomal protein S20 274
202 4V7P 20 AT, DT 30S ribosomal protein S20 274
203 4V8J 20 AT, CT 30S ribosomal protein S20 274
204 1N36 20 T 30S RIBOSOMAL PROTEIN S20 274
205 2ZM6 20 T 30S ribosomal protein S20 274
206 5D8B 47 QC, UA 30S ribosomal protein S20 274
207 4LEL 20 QT, XT 30S ribosomal protein S20 274
208 2F4V 21 T 30S ribosomal protein S20 274
209 4V9L 19 AT, CT 30S ribosomal protein S20 274
210 4V5G 20 AT, CT 30S RIBOSOMAL PROTEIN S20 274
211 1I97 20 T 30S RIBOSOMAL PROTEIN S20 274
212 4V9J 19 AT, CT 30S ribosomal protein S20 274
213 1I95 20 T 30S RIBOSOMAL PROTEIN S20 274
214 4V8O 20 AT 30S RIBOSOMAL PROTEIN S20 274
215 4V9M 19 AT, CT 30S ribosomal protein S20 274
216 4W29 19 AT, CT 30S ribosomal protein S20 274
217 4V4Y 22 AW 30S ribosomal protein S20 274
218 4V4J 53 u 30S ribosomal protein S20 274
219 4V4X 22 AW 30S ribosomal protein S20 274
220 4V4Z 23 AW 30S ribosomal protein S20 274
221 4V4I 53 u 30S ribosomal protein S20 274
222 4V4P 55 BW 30S ribosomal protein S20 274
223 4V4R 23 AT 30S ribosomal protein S20 274
224 4V4S 23 AT 30S ribosomal protein S20 274
225 4V4T 23 AT 30S ribosomal protein S20 274
226 4V49 22 AT 30S ribosomal protein S20 562
227 4V4A 20 AT 30S ribosomal protein S20 562
228 4V4G 20 AT, CT, ET, GT, IT 30S ribosomal protein S20 562
229 5A9Z 53 BX 30S ribosomal protein S20 274
230 5AA0 53 BX 30S ribosomal protein S20 274
231 4V5N 20 AT 30S RIBOSOMAL PROTEIN S20 274
232 4V5M 20 AT 30S RIBOSOMAL PROTEIN S20 274
233 4V68 13 AT 30S ribosomal protein S20 274
234 1ML5 25 W 30S RIBOSOMAL PROTEIN S20 562
235 1JGO 23 W 30S RIBOSOMAL PROTEIN S20 274
236 1JGP 23 W 30S RIBOSOMAL PROTEIN S20 274
237 1JGQ 23 W 30S RIBOSOMAL PROTEIN S20 274
238 4V42 23 AW 30S RIBOSOMAL PROTEIN S20 274