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Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Sequence Clustering and Redundancy Reduction Results
4JI8
Cluster # 42 Members. Sequence cutoff: 100% Cluster size: 140 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4W2F 20 AT, CT 30S Ribosomal Protein S20 300852  
2 4W2G 20 AT, CT 30S Ribosomal Protein S20 300852  
3 4LFB 20 T ribosomal protein S20 300852  
4 1VY4 20 AT, CT 30S ribosomal protein S20 300852  
5 4W2I 20 AT, CT 30S Ribosomal Protein S20 300852  
6 1VY5 20 AT, CT 30S ribosomal protein S20 300852  
7 4W2H 20 AT, CT 30S Ribosomal Protein S20 300852  
8 4V8I 20 AT, CT 30S Ribosomal Protein S20 274  
9 4JI1 20 T RIBOSOMAL PROTEIN S20 300852  
10 4DR6 20 T 30S ribosomal protein S20 300852  
11 4LF7 20 T ribosomal protein S20 300852  
12 4LF8 20 T ribosomal protein S20 300852  
13 2UUB 20 T 30S RIBOSOMAL PROTEIN S20 300852  
14 4DV6 20 T ribosomal protein S20 300852  
15 4JYA 20 T 30S ribosomal protein S20 300852  
16 4DR5 20 T 30S ribosomal protein S20 300852  
17 4KHP 20 T 30S Ribosomal protein S20 300852  
18 4DR2 20 T 30S ribosomal protein S20 300852  
19 4LF9 20 T ribosomal protein S20 300852  
20 4DUY 20 T ribosomal protein S20 300852  
21 4DV7 20 T ribosomal protein S20 300852  
22 4V9H 14 AT 30S ribosomal protein S20 300852  
23 4V8D 20 AW, CW 30S RIBOSOMAL PROTEIN S20 300852  
24 4DR3 20 T 30S ribosomal protein S20 300852  
25 4V90 20 AT 30S RIBOSOMAL PROTEIN S20 300852  
26 4JI3 20 T RIBOSOMAL PROTEIN S20 300852  
27 4JI6 20 T RIBOSOMAL PROTEIN S20 300852  
28 4JI8 20 T RIBOSOMAL PROTEIN S20 300852  
29 4V9R 20 AT, CT 30S Ribosomal Protein S20 274  
30 4LF4 20 T ribosomal protein S20 300852  
31 4LF6 20 T ribosomal protein S20 300852  
32 4JI7 20 T RIBOSOMAL PROTEIN S20 300852  
33 4V8B 20 AW, CW 30S RIBOSOMAL PROTEIN S20 300852  
34 2UUA 20 T 30S RIBOSOMAL PROTEIN S20 300852  
35 4V87 50 BW, CW 30S RIBOSOMAL PROTEIN S20 300852  
36 4V95 20 AT, CT 30S Ribosomal Protein S20 274  
37 1VY7 20 AT, CT 30S ribosomal protein S20 300852  
38 4LNT 20 QT, XT 30S ribosomal protein S20 300852  
39 4DR1 20 T 30S ribosomal protein S20 300852  
40 4LFA 20 T ribosomal protein S20 300852  
41 4DV4 20 T ribosomal protein S20 300852  
42 4JI0 20 T ribosomal protein S20 300852  
43 4V9S 20 AT, CT 30S Ribosomal Protein S20 274  
44 4JI2 20 T RIBOSOMAL PROTEIN S20 300852  
45 4JV5 20 T 30S ribosomal protein 20 300852  
46 4DR7 20 T 30S ribosomal protein S20 300852  
47 4DUZ 20 T ribosomal protein S20 300852  
48 4V8G 20 AT, CT 30S Ribosomal Protein S20 300852  
49 4DV3 20 T ribosomal protein S20 300852  
50 4DV5 20 T ribosomal protein S20 300852  
51 2UUC 20 T 30S RIBOSOMAL PROTEIN S20 300852  
52 4LFC 20 T ribosomal protein S20 300852  
53 4JI4 20 T RIBOSOMAL PROTEIN S20 300852  
54 1VY6 20 AT, CT 30S ribosomal protein S20 300852  
55 1XMQ 22 T 30S Ribosomal Protein S20 274  
56 4DV0 20 T ribosomal protein S20 300852  
57 4V9B 20 AW, CW 30S RIBOSOMAL PROTEIN S20 300852  
58 4V6F 50 BW, CW 30S ribosomal protein S20 300852  
59 4V8F 50 BW, CW 30S RIBOSOMAL PROTEIN S20 300852  
60 4DV2 20 T ribosomal protein S20 300852  
61 4DV1 20 T ribosomal protein S20 300852  
62 1N32 22 T 30S RIBOSOMAL PROTEIN S20 274  
63 1I94 20 T 30S RIBOSOMAL PROTEIN S20 274  
64 4V8H 20 AT, CT 30S Ribosomal Protein S20 300852  
65 4JI5 20 T RIBOSOMAL PROTEIN S20 300852  
66 4K0K 20 T 30S ribosomal protein S20 300852  
67 4W2E 53 t 30S ribosomal protein S20 300852  
68 4V8C 50 CW, DW 30S RIBOSOMAL PROTEIN S20 300852  
69 4LF5 20 T ribosomal protein S20 300852  
70 4V9A 20 AW, CW 30S RIBOSOMAL PROTEIN S20 300852  
71 4V5J 20 AT, CT 30S RIBOSOMAL PROTEIN S20 300852  
72 4V7Y 20 AT, CT 30S ribosomal protein S20 300852  
73 4V8E 50 BW, DW 30S RIBOSOMAL PROTEIN S20 300852  
74 4DR4 20 T 30S ribosomal protein S20 300852  
75 2UU9 20 T 30S RIBOSOMAL PROTEIN S20 300852  
76 4V8Q 54 BT 30S RIBOSOMAL PROTEIN S20 300852  
77 4NXM 20 T ribosomal protein S20 300852  
78 4V5L 20 AT 30S RIBOSOMAL PROTEIN S20 300852  
79 4V7X 20 AT, CT 30S ribosomal protein S20 300852  
80 1IBL 23 T 30S RIBOSOMAL PROTEIN S20 274  
81 4V7W 20 AT, CT 30S ribosomal protein S20 300852  
82 4NXN 20 T ribosomal protein S20 300852  
83 1XNR 22 T 16S Ribosomal protein S20 274  
84 4LT8 20 QT, XT 30S ribosomal protein S20 300852  
85 4V51 20 AT, CT 30S RIBOSOMAL PROTEIN S20 300852  
86 4V7L 20 AT, CT 30S ribosomal protein S20 300852  
87 4V5R 20 AT, CT 30S RIBOSOMAL PROTEIN S20 300852  
88 1XNQ 22 T Ribosomal protein S20 274  
89 4V8A 50 CT, DT 30S ribosomal protein S20 300852  
90 4V5K 20 AT, CT 30S RIBOSOMAL PROTEIN S20 300852  
91 4V5Q 20 AT, CT 30S RIBOSOMAL PROTEIN S20 300852  
92 4V7J 19 At, Bt 30S ribosomal protein S20 300852  
93 4V5C 20 AT, CT 30S RIBOSOMAL PROTEIN S20 300852  
94 4V5E 20 AT, CT 30S RIBOSOMAL PROTEIN S20 300852  
95 4L47 20 QT, XT 30S ribosomal protein S20 300852  
96 4V5P 20 AT, CT 30S RIBOSOMAL PROTEIN S20 300852  
97 4V5D 20 AT, CT 30S RIBOSOMAL PROTEIN S20 300852  
98 4V7Z 20 AT, CT 30S ribosomal protein S20 300852  
99 4V8X 20 AT, CT 30S RIBOSOMAL PROTEIN S20 300852  
100 4V5S 20 AT, CT 30S RIBOSOMAL PROTEIN S20 300852  
101 4V9I 20 AT, CT 30S Ribosomal protein S20 300852  
102 1XMO 22 T 30S ribosomal protein S20 274  
103 1N33 22 T 30S RIBOSOMAL PROTEIN S20 274  
104 1IBK 21 T 30S RIBOSOMAL PROTEIN S20 274  
105 4V6G 20 AW, CW 30S RIBOSOMAL PROTEIN S20 300852  
106 4V8N 20 AT, CT 30S RIBOSOMAL PROTEIN S20 300852  
107 4V97 20 AT, CT 30S ribosomal protein S20 300852  
108 4V7M 20 AT, CT 30S ribosomal protein S20 300852  
109 1IBM 23 T 30S RIBOSOMAL PROTEIN S20 274  
110 4V6A 20 AT, CT 30S ribosomal protein S20 300852  
111 4V7K 19 At, Bt 30S ribosomal protein S20 300852  
112 4P70 20 QT, XT 30S ribosomal protein S20 300852  
113 4V8U 20 AT, CT 30S RIBOSOMAL PROTEIN S20 300852  
114 4LSK 20 QT, XT 30S ribosomal protein S20 300852  
115 4P6F 20 QT, XT 30S ribosomal protein S20 300852  
116 4V5F 20 AT, CT 30S RIBOSOMAL PROTEIN S20 300852  
117 1VVJ 20 QT, XT 30S ribosomal protein S20 300852  
118 4LFZ 20 QT, XT 30S ribosomal protein S20 300852  
119 2HHH 20 T 30S ribosomal protein S20 300852  
120 4OX9 20 T 30S ribosomal protein S20 300852  
121 1I96 20 T 30S RIBOSOMAL PROTEIN S20 274  
122 1N34 21 T 30S RIBOSOMAL PROTEIN S20 274  
123 4V5A 20 AT, CT 30S RIBOSOMAL PROTEIN S20 300852  
124 4L71 20 QT, XT 30S ribosomal protein S20 300852  
125 4V8J 20 AT, CT 30S ribosomal protein S20 300852  
126 1N36 20 T 30S RIBOSOMAL PROTEIN S20 274  
127 4LEL 20 QT, XT 30S ribosomal protein S20 300852  
128 4V9L 19 AT, CT 30S ribosomal protein S20 262724  
129 4V5G 20 AT, CT 30S RIBOSOMAL PROTEIN S20 300852  
130 1I97 20 T 30S RIBOSOMAL PROTEIN S20 274  
131 1I95 20 T 30S RIBOSOMAL PROTEIN S20 274  
132 4V8O 20 AT 30S RIBOSOMAL PROTEIN S20 300852  
133 4V9M 19 AT, CT 30S ribosomal protein S20 262724  
134 4W29 19 AT, CT 30S ribosomal protein S20 262724  
135 4V4Y 22 AW 30S ribosomal protein S20 300852  
136 4V4X 22 AW 30S ribosomal protein S20 300852  
137 4V4Z 23 AW 30S ribosomal protein S20 300852  
138 4V5N 20 AT 30S RIBOSOMAL PROTEIN S20 300852  
139 4V5M 20 AT 30S RIBOSOMAL PROTEIN S20 300852  
140 4V68 13 AT 30S ribosomal protein S20 274  
 
Sequence Clusters for the Sequence Entities in PDB 4JI8
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 187 27
95% 29 188 47
90% 29 188 50
70% 29 188 60
50% 39 269 34
40% 39 269 46
30% 39 274 65
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 189 25
95% 29 189 43
90% 29 189 46
70% 29 189 56
50% 33 263 41
40% 40 316 35
30% 40 316 44
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 17436
95% 29 196 35
90% 29 196 37
70% 33 275 24
50% 33 275 33
40% 33 275 45
30% 33 275 68
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 190 22
95% 29 190 41
90% 29 190 44
70% 29 190 54
50% 33 268 38
40% 33 268 51
30% 38 317 50
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 188 26
95% 29 188 48
90% 29 188 51
70% 29 188 61
50% 29 188 94
40% 29 188 119
30% 29 188 142
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 192 20
95% 31 197 33
90% 31 197 35
70% 31 197 47
50% 38 276 32
40% 38 276 43
30% 38 276 67
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 184 28
95% 29 189 45
90% 29 189 48
70% 29 189 58
50% 29 189 92
40% 29 189 117
30% 33 266 76
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 21 104 54
95% 29 183 49
90% 29 187 52
70% 29 187 62
50% 29 187 95
40% 29 187 120
30% 29 187 143
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 119 48
95% 26 168 61
90% 26 168 64
70% 26 168 80
50% 26 168 117
40% 26 168 139
30% 26 168 161
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 170 37
95% 27 170 59
90% 27 170 63
70% 27 170 78
50% 34 266 37
40% 34 266 49
30% 34 266 72
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 189 23
95% 29 190 38
90% 29 190 42
70% 29 190 52
50% 29 190 91
40% 33 263 53
30% 33 263 75
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 140 42
95% 29 188 46
90% 29 188 49
70% 29 188 59
50% 29 188 93
40% 29 188 118
30% 29 188 141
Entity #21: Chains: U - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 179 34
95% 29 179 53
90% 29 179 55
70% 29 179 68
50% 29 179 105
40% 29 179 132
30% 29 179 151
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 26 166 38
95% 26 166 63
90% 26 166 66
70% 26 166 82
50% 27 206 75
40% 27 206 100
30% 27 206 120
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 182 29
95% 29 190 39
90% 29 190 43
70% 29 190 53
50% 33 263 39
40% 33 264 52
30% 33 264 74
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 189 24
95% 29 189 42
90% 29 189 45
70% 29 189 55
50% 34 267 36
40% 34 267 48
30% 34 269 71
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 194 18
95% 36 200 29
90% 36 200 30
70% 36 200 44
50% 36 200 86
40% 36 200 108
30% 41 236 94
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 193 19
95% 30 194 36
90% 30 194 38
70% 30 194 49
50% 34 234 56
40% 34 235 74
30% 34 235 96
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 189 21
95% 30 189 40
90% 30 193 39
70% 30 193 51
50% 36 269 35
40% 37 271 47
30% 43 321 43
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 102 76
95% 29 189 44
90% 29 189 47
70% 29 189 57
50% 33 263 40
40% 33 263 54
30% 38 312 53
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.