POP-OUT | CLOSE
 
Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Sequence Clustering and Redundancy Reduction Results
4JI8
Cluster # 43 Members. Sequence cutoff: 100% Cluster size: 193 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
Select for download / view details OR: Select two chains for comparison
  Download      Details  
1 4LFB 20 T ribosomal protein S20 300852  
2 4QCM 20 T 30S ribosomal protein S20 300852  
3 4QCO 20 T 30S ribosomal protein S20 300852  
4 4QCQ 20 T 30S ribosomal protein S20 300852  
5 4QCS 20 T 30S ribosomal protein S20 300852  
6 3V2C 20 T 30S Ribosomal Protein S20 274  
7 3V2E 20 T 30S Ribosomal Protein S20 274  
8 4JI1 20 T RIBOSOMAL PROTEIN S20 300852  
9 4DR6 20 T 30S ribosomal protein S20 300852  
10 4LF7 20 T ribosomal protein S20 300852  
11 4LF8 20 T ribosomal protein S20 300852  
12 2UUB 20 T 30S RIBOSOMAL PROTEIN S20 300852  
13 4DV6 20 T ribosomal protein S20 300852  
14 4JYA 20 T 30S ribosomal protein S20 300852  
15 4DR5 20 T 30S ribosomal protein S20 300852  
16 4KHP 20 T 30S Ribosomal protein S20 300852  
17 4DR2 20 T 30S ribosomal protein S20 300852  
18 4LF9 20 T ribosomal protein S20 300852  
19 4DUY 20 T ribosomal protein S20 300852  
20 4DV7 20 T ribosomal protein S20 300852  
21 4JUW 14 T 30S ribosomal protein S20 300852  
22 3UZ6 20 W 30S RIBOSOMAL PROTEIN S20 300852  
23 3UZ7 20 W 30S RIBOSOMAL PROTEIN S20 300852  
24 4DR3 20 T 30S ribosomal protein S20 300852  
25 4CR1 20 T 30S RIBOSOMAL PROTEIN S20 300852  
26 4JI3 20 T RIBOSOMAL PROTEIN S20 300852  
27 4JI6 20 T RIBOSOMAL PROTEIN S20 300852  
28 4JI8 20 T RIBOSOMAL PROTEIN S20 300852  
29 4NVU 20 T 30S Ribosomal Protein S20 274  
30 4NVW 20 T 30S Ribosomal Protein S20 274  
31 4LF4 20 T ribosomal protein S20 300852  
32 4LF6 20 T ribosomal protein S20 300852  
33 4JI7 20 T RIBOSOMAL PROTEIN S20 300852  
34 3UYD 20 W 30S RIBOSOMAL PROTEIN S20 300852  
35 3UYF 20 W 30S RIBOSOMAL PROTEIN S20 300852  
36 2UUA 20 T 30S RIBOSOMAL PROTEIN S20 300852  
37 3TVF 20 W 30S RIBOSOMAL PROTEIN S20 300852  
38 3TVG 20 W 30S RIBOSOMAL PROTEIN S20 300852  
39 4DH9 20 T 30S Ribosomal Protein S20 274  
40 4DHB 20 T 30S Ribosomal Protein S20 274  
41 4QCY 20 T 30S ribosomal protein S20 300852  
42 4QD0 20 T 30S ribosomal protein S20 300852  
43 1VX8 20 T 30S ribosomal protein S20 300852  
44 1VXI 20 T 30S ribosomal protein S20 300852  
45 4DR1 20 T 30S ribosomal protein S20 300852  
46 4LFA 20 T ribosomal protein S20 300852  
47 4DV4 20 T ribosomal protein S20 300852  
48 4JI0 20 T ribosomal protein S20 300852  
49 4NVY 20 T 30S Ribosomal Protein S20 274  
50 4NW0 20 T 30S Ribosomal Protein S20 274  
51 4JI2 20 T RIBOSOMAL PROTEIN S20 300852  
52 4JV5 20 T 30S ribosomal protein 20 300852  
53 4DR7 20 T 30S ribosomal protein S20 300852  
54 4DUZ 20 T ribosomal protein S20 300852  
55 3V22 20 T 30S Ribosomal Protein S20 300852  
56 3V24 20 T 30S ribosomal protein S20 300852  
57 4DV3 20 T ribosomal protein S20 300852  
58 4DV5 20 T ribosomal protein S20 300852  
59 2UUC 20 T 30S RIBOSOMAL PROTEIN S20 300852  
60 4LFC 20 T ribosomal protein S20 300852  
61 4JI4 20 T RIBOSOMAL PROTEIN S20 300852  
62 4QCU 20 T 30S ribosomal protein S20 300852  
63 4QCW 20 T 30S ribosomal protein S20 300852  
64 1XMQ 22 T 30S Ribosomal Protein S20 274  
65 4DV0 20 T ribosomal protein S20 300852  
66 4G5T 20 W 30S RIBOSOMAL PROTEIN S20 300852  
67 4G5V 20 W 30S RIBOSOMAL PROTEIN S20 300852  
68 3I8G 20 W 30S ribosomal protein S20 300852  
69 3I8H 20 W 30S ribosomal protein S20 300852  
70 3UZL 20 W 30S RIBOSOMAL PROTEIN S20 300852  
71 3UZM 20 W 30S RIBOSOMAL PROTEIN S20 300852  
72 4DV2 20 T ribosomal protein S20 300852  
73 4DV1 20 T ribosomal protein S20 300852  
74 1N32 22 T 30S RIBOSOMAL PROTEIN S20 274  
75 1I94 20 T 30S RIBOSOMAL PROTEIN S20 274  
76 3V26 20 T 30S Ribosomal Protein S20 300852  
77 3V28 20 T 30S Ribosomal Protein S20 300852  
78 4JI5 20 T RIBOSOMAL PROTEIN S20 300852  
79 4K0K 20 T 30S ribosomal protein S20 300852  
80 3UZ3 20 W 30S RIBOSOMAL PROTEIN S20 300852  
81 3UZ4 20 W 30S RIBOSOMAL PROTEIN S20 300852  
82 4LF5 20 T ribosomal protein S20 300852  
83 4G5K 20 W 30S RIBOSOMAL PROTEIN S20 300852  
84 4G5M 20 W 30S RIBOSOMAL PROTEIN S20 300852  
85 2X9R 20 T 30S RIBOSOMAL PROTEIN S20 300852  
86 2X9T 20 T 30S RIBOSOMAL PROTEIN S20 300852  
87 3OHY 20 T 30S ribosomal protein S20 300852  
88 3OI0 20 T 30S ribosomal protein S20 300852  
89 3UZG 20 W 30S RIBOSOMAL PROTEIN S20 300852  
90 3UZI 20 W 30S RIBOSOMAL PROTEIN S20 300852  
91 4DR4 20 T 30S ribosomal protein S20 300852  
92 2UU9 20 T 30S RIBOSOMAL PROTEIN S20 300852  
93 4ABR 21 T 30S RIBOSOMAL PROTEIN S20 300852  
94 4NXM 20 T ribosomal protein S20 300852  
95 2XQD 20 T 30S RIBOSOMAL PROTEIN S20 300852  
96 3OHC 20 T 30S ribosomal protein S20 300852  
97 3OHD 20 T 30S ribosomal protein S20 300852  
98 1IBL 23 T 30S RIBOSOMAL PROTEIN S20 274  
99 3OGE 20 T 30S ribosomal protein S20 300852  
100 3OGY 20 T 30S ribosomal protein S20 300852  
101 4NXN 20 T ribosomal protein S20 300852  
102 1XNR 22 T 16S Ribosomal protein S20 274  
103 1VXP 20 T 30S ribosomal protein S20 300852  
104 1VXS 20 T 30S ribosomal protein S20 300852  
105 2J00 20 T 30S RIBOSOMAL PROTEIN S20 300852  
106 2J02 20 T 30S RIBOSOMAL PROTEIN S20 300852  
107 3KNH 20 T 30S ribosomal protein S20 300852  
108 2Y10 20 T 30S RIBOSOMAL PROTEIN S20 300852  
109 2Y18 20 T 30S RIBOSOMAL PROTEIN S20 300852  
110 1XNQ 22 T Ribosomal protein S20 274  
111 3UXS 20 T 30S ribosomal protein S20 300852  
112 3UXT 20 T 30S ribosomal protein S20 300852  
113 2XG1 20 T 30S RIBOSOMAL PROTEIN S20 300852  
114 2XFZ 20 T 30S RIBOSOMAL PROTEIN S20 300852  
115 2Y0Y 20 T 30S RIBOSOMAL PROTEIN S20 300852  
116 2Y12 20 T 30S RIBOSOMAL PROTEIN S20 300852  
117 3KIQ 19 t 30S ribosomal protein S20 300852  
118 3KIS 19 t 30S ribosomal protein S20 300852  
119 2WDG 20 T 30S RIBOSOMAL PROTEIN S20 300852  
120 2WDH 20 T 30S RIBOSOMAL PROTEIN S20 300852  
121 2WH1 20 T 30S RIBOSOMAL PROTEIN S20 300852  
122 2WH3 20 T 30S RIBOSOMAL PROTEIN S20 300852  
123 1VVL 20 T 30S ribosomal protein S20 300852  
124 1VVN 20 T 30S ribosomal protein S20 300852  
125 2Y0U 20 T 30S RIBOSOMAL PROTEIN S20 300852  
126 2Y0W 20 T 30S RIBOSOMAL PROTEIN S20 300852  
127 2WDK 20 T 30S RIBOSOMAL PROTEIN S20 300852  
128 2WDM 20 T 30S RIBOSOMAL PROTEIN S20 300852  
129 3OI2 20 T 30S ribosomal protein S20 300852  
130 3OI4 20 T 30S ribosomal protein S20 300852  
131 4BYB 20 T 30S RIBOSOMAL PROTEIN S20 300852  
132 4BYD 20 T 30S RIBOSOMAL PROTEIN S20 300852  
133 2Y14 20 T 30S RIBOSOMAL PROTEIN S20 300852  
134 2Y16 20 T 30S RIBOSOMAL PROTEIN S20 300852  
135 4K0L 20 T 30S Ribosomal protein S20 300852  
136 4K0P 20 T 30S Ribosomal protein S20 300852  
137 1XMO 22 T 30S ribosomal protein S20 274  
138 1N33 22 T 30S RIBOSOMAL PROTEIN S20 274  
139 1IBK 21 T 30S RIBOSOMAL PROTEIN S20 274  
140 3I9B 20 W 30S RIBOSOMAL PROTEIN S20 300852  
141 3I9D 20 W 30S ribosomal protein S20 300852  
142 3ZN7 20 T 30S RIBOSOMAL PROTEIN S20 300852  
143 3ZND 20 T 30S RIBOSOMAL PROTEIN S20 300852  
144 4EJ9 20 T 30S ribosomal protein S20 300852  
145 4EJA 20 T 30S ribosomal protein S20 300852  
146 3KNL 20 T 30S ribosomal protein S20 300852  
147 3KNN 20 T 30S ribosomal protein S20 300852  
148 1IBM 23 T 30S RIBOSOMAL PROTEIN S20 274  
149 3HUW 20 T 30S ribosomal protein S20 300852  
150 3HUY 20 T 30S ribosomal protein S20 300852  
151 3KNJ 20 T 30S ribosomal protein S20 300852  
152 3KIU 19 t 30S ribosomal protein S20 300852  
153 3KIX 19 t 30S ribosomal protein S20 300852  
154 1VY0 20 T 30S ribosomal protein S20 300852  
155 1VY2 20 T 30S ribosomal protein S20 300852  
156 4B8F 20 T 30S RIBOSOMAL PROTEIN S20 300852  
157 4B8H 20 T 30S RIBOSOMAL PROTEIN S20 300852  
158 1VXK 20 T 30S ribosomal protein S20 300852  
159 1VXM 20 T 30S ribosomal protein S20 300852  
160 2WRI 20 T 30S RIBOSOMAL PROTEIN S20 300852  
161 2WRK 20 T 30S RIBOSOMAL PROTEIN S20 300852  
162 4KWZ 20 T 30S ribosomal protein S20 300852  
163 4KX1 20 T 30S ribosomal protein S20 300852  
164 1VVX 20 T 30S ribosomal protein S20 300852  
165 1VVZ 20 T 30S ribosomal protein S20 300852  
166 2HHH 20 T 30S ribosomal protein S20 300852  
167 4OX9 20 T 30S ribosomal protein S20 300852  
168 1I96 20 T 30S RIBOSOMAL PROTEIN S20 274  
169 1N34 21 T 30S RIBOSOMAL PROTEIN S20 274  
170 2V46 20 T 30S RIBOSOMAL PROTEIN S20 300852  
171 2V48 20 T 30S RIBOSOMAL PROTEIN S20 300852  
172 1VVP 20 T 30S ribosomal protein S20 300852  
173 1VVR 20 T 30S ribosomal protein S20 300852  
174 3V6U 20 T 30S ribosomal protein S20 300852  
175 3V6V 20 T 30S ribosomal protein S20 300852  
176 1N36 20 T 30S RIBOSOMAL PROTEIN S20 274  
177 1VVT 20 T 30S ribosomal protein S20 300852  
178 1VVV 20 T 30S ribosomal protein S20 300852  
179 4KD8 19 T 30S ribosomal protein S20 262724  
180 4KDA 19 T 30S ribosomal protein S20 262724  
181 2WRN 20 T 30S RIBOSOMAL PROTEIN S20 300852  
182 2WRQ 20 T 30S RIBOSOMAL PROTEIN S20 300852  
183 1I97 20 T 30S RIBOSOMAL PROTEIN S20 274  
184 1I95 20 T 30S RIBOSOMAL PROTEIN S20 274  
185 3ZVO 20 T 30S RIBOSOMAL PROTEIN S20 300852  
186 4KDG 19 T 30S ribosomal protein S20 262724  
187 4KDJ 19 T 30S ribosomal protein S20 262724  
188 2HGP 22 W 30S ribosomal protein S20 300852  
189 2HGI 22 W 30S ribosomal protein S20 300852  
190 2HGR 23 W 30S ribosomal protein S20 300852  
191 2XUY 20 T 30S RIBOSOMAL PROTEIN S20 300852  
192 2XSY 20 T 30S RIBOSOMAL PROTEIN S20 300852  
193 3FIC 13 T 30S ribosomal protein S20 274  
 
Sequence Clusters for the Sequence Entities in PDB 4JI8
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 252 29
95% 29 254 48
90% 29 254 51
70% 29 254 63
50% 45 369 34
40% 45 369 48
30% 45 374 67
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 255 27
95% 29 255 44
90% 29 255 47
70% 29 255 59
50% 39 363 42
40% 43 403 39
30% 43 403 53
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 16995
95% 29 262 36
90% 29 262 38
70% 39 375 24
50% 39 375 33
40% 39 375 47
30% 39 375 71
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 256 24
95% 29 256 42
90% 29 256 45
70% 29 256 57
50% 39 365 39
40% 39 365 53
30% 41 401 57
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 254 28
95% 29 254 49
90% 29 254 52
70% 29 254 64
50% 29 254 99
40% 29 254 124
30% 29 254 144
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 258 21
95% 31 263 35
90% 31 263 37
70% 31 263 48
50% 44 376 32
40% 44 376 45
30% 44 376 69
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 250 30
95% 29 255 46
90% 29 255 49
70% 29 255 61
50% 29 255 97
40% 29 255 122
30% 39 363 78
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 21 157 62
95% 29 249 51
90% 29 253 53
70% 29 253 65
50% 29 253 100
40% 29 253 126
30% 29 253 146
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 172 49
95% 26 221 64
90% 26 221 68
70% 26 221 81
50% 26 221 116
40% 26 221 144
30% 26 221 166
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 223 38
95% 27 223 63
90% 27 223 67
70% 27 223 80
50% 40 366 38
40% 40 366 52
30% 40 366 75
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 255 25
95% 29 256 39
90% 29 256 43
70% 29 256 55
50% 29 256 96
40% 39 363 55
30% 39 363 77
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 193 43
95% 29 254 47
90% 29 254 50
70% 29 254 62
50% 29 254 98
40% 29 254 123
30% 29 254 143
Entity #21: Chains: U - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 238 34
95% 29 238 55
90% 29 238 59
70% 29 238 71
50% 29 238 110
40% 29 238 133
30% 29 238 153
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 26 219 39
95% 26 219 66
90% 26 219 70
70% 26 219 83
50% 30 282 81
40% 30 282 101
30% 30 282 123
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 248 32
95% 29 256 40
90% 29 256 44
70% 29 256 56
50% 39 363 40
40% 39 364 54
30% 39 364 76
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 255 26
95% 29 255 43
90% 29 255 46
70% 29 255 58
50% 40 367 37
40% 40 367 51
30% 40 369 72
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 260 18
95% 36 266 34
90% 36 266 36
70% 36 266 47
50% 36 266 88
40% 36 266 112
30% 44 313 94
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 259 20
95% 30 260 37
90% 30 260 39
70% 30 260 51
50% 37 308 57
40% 37 309 73
30% 37 309 97
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 255 23
95% 30 255 41
90% 30 259 40
70% 30 259 52
50% 42 369 36
40% 43 371 49
30% 46 408 50
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 142 82
95% 29 255 45
90% 29 255 48
70% 29 255 60
50% 39 363 41
40% 39 363 56
30% 41 399 59
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.