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Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Sequence Clustering and Redundancy Reduction Results
4JI8
Cluster # 49 Members. Sequence cutoff: 100% Cluster size: 169 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4Y4O 51 1t, 2t 30S ribosomal protein S20 300852  
2 4W2F 20 AT, CT 30S Ribosomal Protein S20 300852  
3 4Y4P 51 1t, 2t 30S ribosomal protein S20 300852  
4 4W2G 20 AT, CT 30S Ribosomal Protein S20 300852  
5 4LFB 20 T ribosomal protein S20 300852  
6 1VY4 20 AT, CT 30S ribosomal protein S20 300852  
7 4W2I 20 AT, CT 30S Ribosomal Protein S20 300852  
8 1VY5 20 AT, CT 30S ribosomal protein S20 300852  
9 4WQF 53 BT, DT 30S ribosomal protein S20 300852  
10 4W2H 20 AT, CT 30S Ribosomal Protein S20 300852  
11 4WPO 53 BT, DT 30S ribosomal protein S20 300852  
12 4V8I 20 AT, CT 30S Ribosomal Protein S20 274  
13 4JI1 20 T RIBOSOMAL PROTEIN S20 300852  
14 4Z3S 51 1t, 2t 30S ribosomal protein S20 300852  
15 4Z3Q 51 1t, 2t 30S Ribosomal Protein S20 300852  
16 4DR6 20 T 30S ribosomal protein S20 300852  
17 4LF7 20 T ribosomal protein S20 300852  
18 4LF8 20 T ribosomal protein S20 300852  
19 4WSD 20 BA, BI 30S ribosomal protein S20 300852  
20 4WQU 53 BT, DT 30S ribosomal protein S20 300852  
21 4Z8C 51 1t, 2t 30S ribosomal protein S20 300852  
22 2UUB 20 T 30S RIBOSOMAL PROTEIN S20 300852  
23 4DV6 20 T ribosomal protein S20 300852  
24 4JYA 20 T 30S ribosomal protein S20 300852  
25 4DR5 20 T 30S ribosomal protein S20 300852  
26 4KHP 20 T 30S Ribosomal protein S20 300852  
27 4DR2 20 T 30S ribosomal protein S20 300852  
28 4WRO 24 BI 30S ribosomal protein S20 300852  
29 4WQ1 20 BA, BI 30S ribosomal protein S20 300852  
30 4LF9 20 T ribosomal protein S20 300852  
31 4WQY 53 BT, DT 30S ribosomal protein S20 300852  
32 4DUY 20 T ribosomal protein S20 300852  
33 4DV7 20 T ribosomal protein S20 300852  
34 4WRA 20 BA, BI 30S ribosomal protein S20 300852  
35 4V9H 14 AT 30S ribosomal protein S20 300852  
36 4V8D 20 AW, CW 30S RIBOSOMAL PROTEIN S20 300852  
37 4DR3 20 T 30S ribosomal protein S20 300852  
38 4V90 20 AT 30S RIBOSOMAL PROTEIN S20 300852  
39 4JI3 20 T RIBOSOMAL PROTEIN S20 300852  
40 4WQR 20 BA, BI 30S ribosomal protein S20 300852  
41 4JI6 20 T RIBOSOMAL PROTEIN S20 300852  
42 4JI8 20 T RIBOSOMAL PROTEIN S20 300852  
43 4V9R 20 AT, CT 30S Ribosomal Protein S20 274  
44 4LF4 20 T ribosomal protein S20 300852  
45 4LF6 20 T ribosomal protein S20 300852  
46 4JI7 20 T RIBOSOMAL PROTEIN S20 300852  
47 4WU1 20 BA, BI 30S ribosomal protein S20 300852  
48 4WR6 20 BA, BI 30S ribosomal protein S20 300852  
49 4V8B 20 AW, CW 30S RIBOSOMAL PROTEIN S20 300852  
50 2UUA 20 T 30S RIBOSOMAL PROTEIN S20 300852  
51 4V87 50 BW, CW 30S RIBOSOMAL PROTEIN S20 300852  
52 4V95 20 AT, CT 30S Ribosomal Protein S20 274  
53 1VY7 20 AT, CT 30S ribosomal protein S20 300852  
54 4LNT 20 QT, XT 30S ribosomal protein S20 300852  
55 4DR1 20 T 30S ribosomal protein S20 300852  
56 4LFA 20 T ribosomal protein S20 300852  
57 4DV4 20 T ribosomal protein S20 300852  
58 4JI0 20 T ribosomal protein S20 300852  
59 4V9S 20 AT, CT 30S Ribosomal Protein S20 274  
60 4JI2 20 T RIBOSOMAL PROTEIN S20 300852  
61 4JV5 20 T 30S ribosomal protein 20 300852  
62 4DR7 20 T 30S ribosomal protein S20 300852  
63 4DUZ 20 T ribosomal protein S20 300852  
64 4V8G 20 AT, CT 30S Ribosomal Protein S20 300852  
65 4DV3 20 T ribosomal protein S20 300852  
66 4DV5 20 T ribosomal protein S20 300852  
67 2UUC 20 T 30S RIBOSOMAL PROTEIN S20 300852  
68 4LFC 20 T ribosomal protein S20 300852  
69 4WZO 20 BA, BI 30S ribosomal protein S20 300852  
70 4JI4 20 T RIBOSOMAL PROTEIN S20 300852  
71 1VY6 20 AT, CT 30S ribosomal protein S20 300852  
72 1XMQ 22 T 30S Ribosomal Protein S20 274  
73 4DV0 20 T ribosomal protein S20 300852  
74 4V9B 20 AW, CW 30S RIBOSOMAL PROTEIN S20 300852  
75 4V6F 50 BW, CW 30S ribosomal protein S20 300852  
76 4V8F 50 BW, CW 30S RIBOSOMAL PROTEIN S20 300852  
77 4DV2 20 T ribosomal protein S20 300852  
78 4DV1 20 T ribosomal protein S20 300852  
79 1N32 22 T 30S RIBOSOMAL PROTEIN S20 274  
80 1I94 20 T 30S RIBOSOMAL PROTEIN S20 274  
81 4V8H 20 AT, CT 30S Ribosomal Protein S20 300852  
82 4JI5 20 T RIBOSOMAL PROTEIN S20 300852  
83 4K0K 20 T 30S ribosomal protein S20 300852  
84 4W2E 53 t 30S ribosomal protein S20 300852  
85 4V8C 50 CW, DW 30S RIBOSOMAL PROTEIN S20 300852  
86 4LF5 20 T ribosomal protein S20 300852  
87 4V9A 20 AW, CW 30S RIBOSOMAL PROTEIN S20 300852  
88 4V5J 20 AT, CT 30S RIBOSOMAL PROTEIN S20 300852  
89 4V7Y 20 AT, CT 30S ribosomal protein S20 300852  
90 4V8E 50 BW, DW 30S RIBOSOMAL PROTEIN S20 300852  
91 4DR4 20 T 30S ribosomal protein S20 300852  
92 4WZD 20 BA, BI 30S ribosomal protein S20 300852  
93 2UU9 20 T 30S RIBOSOMAL PROTEIN S20 300852  
94 4V8Q 54 BT 30S RIBOSOMAL PROTEIN S20 300852  
95 4NXM 20 T ribosomal protein S20 300852  
96 4V5L 20 AT 30S RIBOSOMAL PROTEIN S20 300852  
97 4V7X 20 AT, CT 30S ribosomal protein S20 300852  
98 4ZER 51 1t, 2t 30S ribosomal protein S20 300852  
99 1IBL 23 T 30S RIBOSOMAL PROTEIN S20 274  
100 4V7W 20 AT, CT 30S ribosomal protein S20 300852  
101 4WT1 20 BA, BI 30S ribosomal protein S20 300852  
102 4Z3R 51 1t, 2t 30S ribosomal protein S20 300852  
103 4WT8 20 AU, BU 30S ribosomal protein S20 300852  
104 4NXN 20 T ribosomal protein S20 300852  
105 1XNR 22 T 16S Ribosomal protein S20 274  
106 4LT8 20 QT, XT 30S ribosomal protein S20 300852  
107 4V51 20 AT, CT 30S RIBOSOMAL PROTEIN S20 300852  
108 4V7L 20 AT, CT 30S ribosomal protein S20 300852  
109 4V5R 20 AT, CT 30S RIBOSOMAL PROTEIN S20 300852  
110 1XNQ 22 T Ribosomal protein S20 274  
111 4V8A 50 CT, DT 30S ribosomal protein S20 300852  
112 4V5K 20 AT, CT 30S RIBOSOMAL PROTEIN S20 300852  
113 4V5Q 20 AT, CT 30S RIBOSOMAL PROTEIN S20 300852  
114 4V7J 19 At, Bt 30S ribosomal protein S20 300852  
115 4V5C 20 AT, CT 30S RIBOSOMAL PROTEIN S20 300852  
116 4V5E 20 AT, CT 30S RIBOSOMAL PROTEIN S20 300852  
117 4L47 20 QT, XT 30S ribosomal protein S20 300852  
118 4V5P 20 AT, CT 30S RIBOSOMAL PROTEIN S20 300852  
119 4V5D 20 AT, CT 30S RIBOSOMAL PROTEIN S20 300852  
120 4V7Z 20 AT, CT 30S ribosomal protein S20 300852  
121 4V8X 20 AT, CT 30S RIBOSOMAL PROTEIN S20 300852  
122 4V5S 20 AT, CT 30S RIBOSOMAL PROTEIN S20 300852  
123 4V9I 20 AT, CT 30S Ribosomal protein S20 300852  
124 1XMO 22 T 30S ribosomal protein S20 274  
125 1N33 22 T 30S RIBOSOMAL PROTEIN S20 274  
126 1IBK 21 T 30S RIBOSOMAL PROTEIN S20 274  
127 4V6G 20 AW, CW 30S RIBOSOMAL PROTEIN S20 300852  
128 4V8N 20 AT, CT 30S RIBOSOMAL PROTEIN S20 300852  
129 4V97 20 AT, CT 30S ribosomal protein S20 300852  
130 4V7M 20 AT, CT 30S ribosomal protein S20 300852  
131 4WSM 20 BA, BI 30S ribosomal protein S20 300852  
132 4TUD 20 QT, XT 30S ribosomal protein S20 300852  
133 1IBM 23 T 30S RIBOSOMAL PROTEIN S20 274  
134 4V6A 20 AT, CT 30S ribosomal protein S20 300852  
135 4TUE 20 QT, XT 30S ribosomal protein S20 300852  
136 4TUA 20 QT, XT 30S ribosomal protein S20 300852  
137 4V7K 19 At, Bt 30S ribosomal protein S20 300852  
138 4TUC 20 QT, XT 30S ribosomal protein S20 300852  
139 4YHH 20 T 30S ribosomal protein S20 300852  
140 4TUB 20 QT, XT 30S ribosomal protein S20 300852  
141 4P70 20 QT, XT 30S ribosomal protein S20 300852  
142 4V8U 20 AT, CT 30S RIBOSOMAL PROTEIN S20 300852  
143 4LSK 20 QT, XT 30S ribosomal protein S20 300852  
144 4P6F 20 QT, XT 30S ribosomal protein S20 300852  
145 4V5F 20 AT, CT 30S RIBOSOMAL PROTEIN S20 300852  
146 1VVJ 20 QT, XT 30S ribosomal protein S20 300852  
147 4LFZ 20 QT, XT 30S ribosomal protein S20 300852  
148 2HHH 20 T 30S ribosomal protein S20 300852  
149 4OX9 20 T 30S ribosomal protein S20 300852  
150 1I96 20 T 30S RIBOSOMAL PROTEIN S20 274  
151 1N34 21 T 30S RIBOSOMAL PROTEIN S20 274  
152 4V5A 20 AT, CT 30S RIBOSOMAL PROTEIN S20 300852  
153 4L71 20 QT, XT 30S ribosomal protein S20 300852  
154 4V8J 20 AT, CT 30S ribosomal protein S20 300852  
155 1N36 20 T 30S RIBOSOMAL PROTEIN S20 274  
156 4LEL 20 QT, XT 30S ribosomal protein S20 300852  
157 4V9L 19 AT, CT 30S ribosomal protein S20 262724  
158 4V5G 20 AT, CT 30S RIBOSOMAL PROTEIN S20 300852  
159 1I97 20 T 30S RIBOSOMAL PROTEIN S20 274  
160 1I95 20 T 30S RIBOSOMAL PROTEIN S20 274  
161 4V8O 20 AT 30S RIBOSOMAL PROTEIN S20 300852  
162 4V9M 19 AT, CT 30S ribosomal protein S20 262724  
163 4W29 19 AT, CT 30S ribosomal protein S20 262724  
164 4V4Y 22 AW 30S ribosomal protein S20 300852  
165 4V4X 22 AW 30S ribosomal protein S20 300852  
166 4V4Z 23 AW 30S ribosomal protein S20 300852  
167 4V5N 20 AT 30S RIBOSOMAL PROTEIN S20 300852  
168 4V5M 20 AT 30S RIBOSOMAL PROTEIN S20 300852  
169 4V68 13 AT 30S ribosomal protein S20 274  
 
Sequence Clusters for the Sequence Entities in PDB 4JI8
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 217 36
95% 43 218 51
90% 43 218 55
70% 43 218 67
50% 55 306 31
40% 55 306 42
30% 60 368 40
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 219 34
95% 43 219 47
90% 43 219 51
70% 43 219 62
50% 49 300 42
40% 56 369 30
30% 56 370 38
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 18637
95% 43 226 39
90% 43 226 43
70% 49 311 22
50% 49 312 30
40% 49 312 41
30% 49 312 57
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 220 32
95% 43 220 45
90% 43 220 49
70% 43 220 60
50% 49 305 39
40% 49 305 50
30% 54 369 44
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 218 35
95% 43 218 52
90% 43 218 56
70% 43 219 65
50% 43 219 92
40% 43 219 114
30% 43 219 128
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 222 29
95% 45 227 36
90% 45 227 40
70% 45 227 52
50% 54 313 29
40% 54 314 39
30% 54 314 54
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 214 37
95% 43 219 49
90% 43 219 53
70% 43 219 64
50% 43 219 91
40% 43 220 113
30% 49 303 70
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 133 59
95% 43 213 56
90% 43 217 58
70% 43 217 69
50% 43 217 94
40% 43 217 116
30% 43 217 130
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 39 145 55
95% 40 194 64
90% 40 194 66
70% 40 194 79
50% 40 194 113
40% 40 194 131
30% 40 194 150
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 44 222 28
95% 44 222 41
90% 44 222 46
70% 44 222 57
50% 50 303 38
40% 50 303 48
30% 50 303 67
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 219 30
95% 43 220 42
90% 43 220 47
70% 43 220 58
50% 49 299 41
40% 49 300 51
30% 49 300 69
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 42 169 49
95% 43 218 50
90% 43 218 54
70% 43 218 66
50% 43 218 93
40% 43 218 115
30% 43 218 129
Entity #21: Chains: U - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 209 40
95% 43 209 59
90% 43 209 62
70% 43 209 73
50% 43 209 100
40% 43 209 123
30% 43 209 135
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 193 45
95% 40 193 65
90% 40 193 67
70% 40 193 80
50% 42 237 77
40% 42 237 102
30% 42 237 121
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 212 38
95% 43 220 43
90% 43 220 48
70% 43 220 59
50% 49 300 40
40% 49 301 49
30% 49 301 68
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 219 33
95% 43 219 46
90% 43 219 50
70% 43 219 61
50% 50 304 37
40% 50 304 47
30% 50 306 63
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 44 224 25
95% 50 230 24
90% 50 230 29
70% 50 230 41
50% 50 230 83
40% 50 230 108
30% 56 269 80
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 44 223 27
95% 44 224 40
90% 44 224 44
70% 44 224 55
50% 49 267 51
40% 49 268 64
30% 49 268 83
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 44 219 31
95% 44 219 44
90% 44 223 45
70% 44 223 56
50% 52 306 35
40% 53 308 43
30% 59 373 37
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 39 130 75
95% 43 219 48
90% 43 219 52
70% 43 219 63
50% 49 300 43
40% 49 300 52
30% 54 364 46
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.