Sequence Similarity Clusters for the Entities in PDB 4JI8

Entity #1 | Chains: A
16S rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 267 37
95 % 56 268 51
90 % 56 268 54
70 % 56 268 65
50 % 74 394 25
40 % 74 394 37
30 % 79 490 29
Entity #11 | Chains: K
RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 269 35
95 % 56 269 47
90 % 56 269 50
70 % 56 269 60
50 % 68 388 34
40 % 75 487 18
30 % 75 487 31
Entity #12 | Chains: L
RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 21334
95 % 56 276 36
90 % 56 276 40
70 % 68 401 20
50 % 68 403 23
40 % 68 403 34
30 % 68 403 55
Entity #13 | Chains: M
RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 270 33
95 % 56 270 44
90 % 56 270 48
70 % 56 270 57
50 % 68 393 32
40 % 68 393 44
30 % 73 491 32
Entity #14 | Chains: N
RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 268 36
95 % 56 268 52
90 % 56 268 55
70 % 56 270 58
50 % 56 270 87
40 % 56 270 108
30 % 56 270 120
Entity #15 | Chains: O
RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 272 28
95 % 58 277 35
90 % 58 277 39
70 % 58 277 50
50 % 73 401 24
40 % 73 404 33
30 % 73 404 54
Entity #16 | Chains: P
RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 264 38
95 % 56 269 49
90 % 56 269 52
70 % 56 269 62
50 % 56 271 86
40 % 56 271 106
30 % 68 389 63
Entity #17 | Chains: Q
RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 48 176 55
95 % 56 263 53
90 % 56 267 56
70 % 56 267 66
50 % 56 267 90
40 % 56 267 111
30 % 56 267 123
Entity #18 | Chains: R
RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 49 183 53
95 % 50 234 62
90 % 50 234 66
70 % 50 234 77
50 % 50 234 103
40 % 50 234 129
30 % 50 234 140
Entity #19 | Chains: S
RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 272 27
95 % 57 272 40
90 % 57 272 45
70 % 57 272 54
50 % 69 393 28
40 % 69 393 39
30 % 69 393 58
Entity #2 | Chains: B
RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 269 31
95 % 56 270 41
90 % 56 270 46
70 % 56 270 55
50 % 68 387 33
40 % 68 390 42
30 % 68 390 61
Entity #20 | Chains: T
RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 217 49
95 % 56 268 50
90 % 56 268 53
70 % 56 268 64
50 % 56 268 89
40 % 56 268 110
30 % 56 268 122
Entity #21 | Chains: U
RIBOSOMAL PROTEIN THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 259 41
95 % 56 259 56
90 % 56 259 59
70 % 56 259 69
50 % 56 259 94
40 % 56 259 116
30 % 56 259 129
Entity #3 | Chains: C
RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 50 233 45
95 % 50 233 63
90 % 50 233 67
70 % 50 233 78
50 % 52 301 78
40 % 52 301 96
30 % 52 301 113
Entity #4 | Chains: D
RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 262 39
95 % 56 270 42
90 % 56 270 47
70 % 56 270 56
50 % 68 389 31
40 % 68 392 40
30 % 68 392 60
Entity #5 | Chains: E
RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 269 34
95 % 56 269 46
90 % 56 269 49
70 % 56 269 59
50 % 69 393 29
40 % 69 393 41
30 % 69 395 57
Entity #6 | Chains: F
RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 274 24
95 % 63 280 33
90 % 63 280 38
70 % 63 280 49
50 % 63 280 83
40 % 63 280 102
30 % 75 334 87
Entity #7 | Chains: G
RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 273 26
95 % 57 274 37
90 % 57 274 41
70 % 57 274 51
50 % 68 336 65
40 % 68 339 75
30 % 68 339 89
Entity #8 | Chains: H
RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 269 32
95 % 57 269 43
90 % 57 273 42
70 % 57 273 52
50 % 71 394 26
40 % 72 398 36
30 % 78 500 28
Entity #9 | Chains: I
RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 52 178 65
95 % 56 269 48
90 % 56 269 51
70 % 56 269 61
50 % 68 388 35
40 % 68 388 45
30 % 73 488 33

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4Y4O 51 1t, 2t 30S ribosomal protein S20 274
2 5J8B 53 t 30S ribosomal protein S20 274
3 4W2F 20 AT, CT 30S Ribosomal Protein S20 274
4 4Y4P 51 1t, 2t 30S ribosomal protein S20 274
5 5FDV 52 1t, 2t 30S ribosomal protein S20 274
6 5J4B 51 1t, 2t 30S ribosomal protein S20 274
7 4W2G 20 AT, CT 30S Ribosomal Protein S20 274
8 4LFB 20 T ribosomal protein S20 274
9 1VY4 20 AT, CT 30S ribosomal protein S20 274
10 5FDU 51 1t, 2t 30S ribosomal protein S20 274
11 4W2I 20 AT, CT 30S Ribosomal Protein S20 274
12 1VY5 20 AT, CT 30S ribosomal protein S20 274
13 5HCQ 51 1t, 2t 30S ribosomal protein S20 274
14 4WQF 53 BT, DT 30S ribosomal protein S20 274
15 4W2H 20 AT, CT 30S Ribosomal Protein S20 274
16 4WPO 53 BT, DT 30S ribosomal protein S20 274
17 4V8I 20 AT, CT 30S Ribosomal Protein S20 274
18 4JI1 20 T RIBOSOMAL PROTEIN S20 274
19 4Z3S 51 1t, 2t 30S ribosomal protein S20 274
20 5DOY 51 1t, 2t 30S Ribosomal Protein S20 274
21 5HD1 51 1t, 2t 30S ribosomal protein S20 274
22 4DR6 20 T 30S ribosomal protein S20 274
23 4LF7 20 T ribosomal protein S20 274
24 4LF8 20 T ribosomal protein S20 274
25 4WSD 20 BA, BI 30S ribosomal protein S20 274
26 4WQU 53 BT, DT 30S ribosomal protein S20 274
27 5E81 20 BA, BI 30S ribosomal protein S20 274
28 4Z8C 51 1t, 2t 30S ribosomal protein S20 274
29 5HCR 51 1t, 2t 30S ribosomal protein S20 274
30 2UUB 20 T 30S RIBOSOMAL PROTEIN S20 274
31 4DV6 20 T ribosomal protein S20 274
32 4JYA 20 T 30S ribosomal protein S20 274
33 5IBB 20 BA, BI 30S ribosomal protein S20 274
34 4DR5 20 T 30S ribosomal protein S20 274
35 5J4C 51 1t, 2t 30S ribosomal protein S20 274
36 4KHP 20 T 30S Ribosomal protein S20 274
37 4DR2 20 T 30S ribosomal protein S20 274
38 4WRO 24 BI 30S ribosomal protein S20 274
39 4WQ1 20 BA, BI 30S ribosomal protein S20 274
40 4LF9 20 T ribosomal protein S20 274
41 4WQY 53 BT, DT 30S ribosomal protein S20 274
42 4DUY 20 T ribosomal protein S20 274
43 4DV7 20 T ribosomal protein S20 274
44 4WRA 20 BA, BI 30S ribosomal protein S20 274
45 5IB7 20 BA, BI 30S ribosomal protein S20 274
46 4X64 20 T 30S ribosomal protein S20 274
47 5HCP 51 1t, 2t 30S ribosomal protein S20 274
48 4V9H 14 AT 30S ribosomal protein S20 274
49 4V8D 20 AW, CW 30S RIBOSOMAL PROTEIN S20 274
50 4DR3 20 T 30S ribosomal protein S20 274
51 4V90 20 AT 30S RIBOSOMAL PROTEIN S20 274
52 4JI3 20 T RIBOSOMAL PROTEIN S20 274
53 4WQR 20 BA, BI 30S ribosomal protein S20 274
54 4JI6 20 T RIBOSOMAL PROTEIN S20 274
55 4JI8 20 T RIBOSOMAL PROTEIN S20 274
56 5IB8 20 BA, BI 30S ribosomal protein S20 274
57 4V9R 20 AT, CT 30S Ribosomal Protein S20 274
58 5EL6 20 BA, BI 30S ribosomal protein S20 274
59 5EL7 20 BA, BI 30S ribosomal protein S20 274
60 4LF4 20 T ribosomal protein S20 274
61 5DFE 54 QT, XT 30S ribosomal protein S20 274
62 4LF6 20 T ribosomal protein S20 274
63 4JI7 20 T RIBOSOMAL PROTEIN S20 274
64 4WU1 20 BA, BI 30S ribosomal protein S20 274
65 5EL4 20 BA, BI 30S ribosomal protein S20 274
66 4WR6 20 BA, BI 30S ribosomal protein S20 274
67 4V8B 20 AW, CW 30S RIBOSOMAL PROTEIN S20 274
68 5HAU 53 1t, 2t 30S ribosomal protein S20 274
69 2UUA 20 T 30S RIBOSOMAL PROTEIN S20 274
70 4V87 50 BW, CW 30S RIBOSOMAL PROTEIN S20 274
71 4V95 20 AT, CT 30S Ribosomal Protein S20 274
72 1VY7 20 AT, CT 30S ribosomal protein S20 274
73 5E7K 20 BA, BI 30S ribosomal protein S20 274
74 5EL5 20 BA, BI 30S ribosomal protein S20 274
75 4LNT 20 QT, XT 30S ribosomal protein S20 274
76 4DR1 20 T 30S ribosomal protein S20 274
77 4LFA 20 T ribosomal protein S20 274
78 4DV4 20 T ribosomal protein S20 274
79 4YZV 20 QT, XT 30S ribosomal protein S20 274
80 4JI0 20 T ribosomal protein S20 274
81 5IWA 19 T 30S ribosomal protein S20 274
82 4V9S 20 AT, CT 30S Ribosomal Protein S20 274
83 4JI2 20 T RIBOSOMAL PROTEIN S20 274
84 4JV5 20 T 30S ribosomal protein 20 274
85 4DR7 20 T 30S ribosomal protein S20 274
86 4DUZ 20 T ribosomal protein S20 274
87 4X65 20 T 30S ribosomal protein S20 274
88 4V8G 20 AT, CT 30S Ribosomal Protein S20 274
89 4DV3 20 T ribosomal protein S20 274
90 4DV5 20 T ribosomal protein S20 274
91 2UUC 20 T 30S RIBOSOMAL PROTEIN S20 274
92 4LFC 20 T ribosomal protein S20 274
93 4WZO 20 BA, BI 30S ribosomal protein S20 274
94 4JI4 20 T RIBOSOMAL PROTEIN S20 274
95 1VY6 20 AT, CT 30S ribosomal protein S20 274
96 1XMQ 22 T 30S Ribosomal Protein S20 274
97 4DV0 20 T ribosomal protein S20 274
98 4V9B 20 AW, CW 30S RIBOSOMAL PROTEIN S20 274
99 4V6F 50 BW, CW 30S ribosomal protein S20 274
100 4X62 20 T 30S ribosomal protein S20 274
101 4V8F 50 BW, CW 30S RIBOSOMAL PROTEIN S20 274
102 4DV2 20 T ribosomal protein S20 274
103 4DV1 20 T ribosomal protein S20 274
104 1N32 22 T 30S RIBOSOMAL PROTEIN S20 274
105 5F8K 51 1t, 2t 30S ribosomal protein S20 274
106 1I94 20 T 30S RIBOSOMAL PROTEIN S20 274
107 4V8H 20 AT, CT 30S Ribosomal Protein S20 274
108 4JI5 20 T RIBOSOMAL PROTEIN S20 274
109 4K0K 20 T 30S ribosomal protein S20 274
110 4W2E 53 t 30S ribosomal protein S20 274
111 4V8C 50 CW, DW 30S RIBOSOMAL PROTEIN S20 274
112 5BR8 20 T 30S ribosomal protein S20 274
113 4LF5 20 T ribosomal protein S20 274
114 4V9A 20 AW, CW 30S RIBOSOMAL PROTEIN S20 274
115 4V5J 20 AT, CT 30S RIBOSOMAL PROTEIN S20 274
116 4V7Y 20 AT, CT 30S ribosomal protein S20 274
117 4V8E 50 BW, DW 30S RIBOSOMAL PROTEIN S20 274
118 5J30 51 QT, XT 30S ribosomal protein S20 274
119 4DR4 20 T 30S ribosomal protein S20 274
120 4WZD 20 BA, BI 30S ribosomal protein S20 274
121 4X66 20 T 30S ribosomal protein S20 274
122 2UU9 20 T 30S RIBOSOMAL PROTEIN S20 274
123 4V8Q 54 BT 30S RIBOSOMAL PROTEIN S20 274
124 4W4G 20 QT, XT 30S ribosomal protein S20 274
125 4NXM 20 T ribosomal protein S20 274
126 4V5L 20 AT 30S RIBOSOMAL PROTEIN S20 274
127 4YPB 20 QT, XT 30S ribosomal protein S20 274
128 4V7X 20 AT, CT 30S ribosomal protein S20 274
129 4ZER 51 1t, 2t 30S ribosomal protein S20 274
130 1IBL 23 T 30S RIBOSOMAL PROTEIN S20 274
131 4V7W 20 AT, CT 30S ribosomal protein S20 274
132 4WT1 20 BA, BI 30S ribosomal protein S20 274
133 4WT8 20 AU, BU 30S ribosomal protein S20 274
134 5DOX 51 1t, 2t 30S ribosomal protein S20 274
135 4NXN 20 T ribosomal protein S20 274
136 1XNR 22 T 16S Ribosomal protein S20 274
137 4LT8 20 QT, XT 30S ribosomal protein S20 274
138 4V51 20 AT, CT 30S RIBOSOMAL PROTEIN S20 274
139 4V7L 20 AT, CT 30S ribosomal protein S20 274
140 4V5R 20 AT, CT 30S RIBOSOMAL PROTEIN S20 274
141 1XNQ 22 T Ribosomal protein S20 274
142 4V8A 50 CT, DT 30S ribosomal protein S20 274
143 4V5K 20 AT, CT 30S RIBOSOMAL PROTEIN S20 274
144 4V5Q 20 AT, CT 30S RIBOSOMAL PROTEIN S20 274
145 4V7J 19 At, Bt 30S ribosomal protein S20 274
146 5J3C 51 QT, XT 30S ribosomal protein S20 274
147 4V5C 20 AT, CT 30S RIBOSOMAL PROTEIN S20 274
148 4V5E 20 AT, CT 30S RIBOSOMAL PROTEIN S20 274
149 4L47 20 QT, XT 30S ribosomal protein S20 274
150 4V5P 20 AT, CT 30S RIBOSOMAL PROTEIN S20 274
151 4ZSN 20 QT, XT 30S ribosomal protein S20 274
152 4V5D 20 AT, CT 30S RIBOSOMAL PROTEIN S20 274
153 4V7Z 20 AT, CT 30S ribosomal protein S20 274
154 4V8X 20 AT, CT 30S RIBOSOMAL PROTEIN S20 274
155 4V5S 20 AT, CT 30S RIBOSOMAL PROTEIN S20 274
156 4V9I 20 AT, CT 30S Ribosomal protein S20 274
157 1XMO 22 T 30S ribosomal protein S20 274
158 1N33 22 T 30S RIBOSOMAL PROTEIN S20 274
159 1IBK 21 T 30S RIBOSOMAL PROTEIN S20 274
160 4V6G 20 AW, CW 30S RIBOSOMAL PROTEIN S20 274
161 4V8N 20 AT, CT 30S RIBOSOMAL PROTEIN S20 274
162 4V97 20 AT, CT 30S ribosomal protein S20 274
163 4V7M 20 AT, CT 30S ribosomal protein S20 274
164 4WSM 20 BA, BI 30S ribosomal protein S20 274
165 4TUD 20 QT, XT 30S ribosomal protein S20 274
166 1IBM 23 T 30S RIBOSOMAL PROTEIN S20 274
167 4V6A 20 AT, CT 30S ribosomal protein S20 274
168 4TUE 20 QT, XT 30S ribosomal protein S20 274
169 4TUA 20 QT, XT 30S ribosomal protein S20 274
170 4V7K 19 At, Bt 30S ribosomal protein S20 274
171 4YY3 20 T 30S ribosomal protein S20 274
172 4TUC 20 QT, XT 30S ribosomal protein S20 274
173 4YHH 20 T 30S ribosomal protein S20 274
174 4TUB 20 QT, XT 30S ribosomal protein S20 274
175 4P70 20 QT, XT 30S ribosomal protein S20 274
176 4V8U 20 AT, CT 30S RIBOSOMAL PROTEIN S20 274
177 4LSK 20 QT, XT 30S ribosomal protein S20 274
178 4P6F 20 QT, XT 30S ribosomal protein S20 274
179 4V5F 20 AT, CT 30S RIBOSOMAL PROTEIN S20 274
180 1VVJ 20 QT, XT 30S ribosomal protein S20 274
181 4LFZ 20 QT, XT 30S ribosomal protein S20 274
182 5CZP 51 QT, XT 30S ribosomal protein S20 274
183 2HHH 20 T 30S ribosomal protein S20 274
184 4OX9 20 T 30S ribosomal protein S20 274
185 1I96 20 T 30S RIBOSOMAL PROTEIN S20 274
186 1N34 21 T 30S RIBOSOMAL PROTEIN S20 274
187 4V5A 20 AT, CT 30S RIBOSOMAL PROTEIN S20 274
188 4L71 20 QT, XT 30S ribosomal protein S20 274
189 4V8J 20 AT, CT 30S ribosomal protein S20 274
190 1N36 20 T 30S RIBOSOMAL PROTEIN S20 274
191 4LEL 20 QT, XT 30S ribosomal protein S20 274
192 4V9L 19 AT, CT 30S ribosomal protein S20 274
193 4V5G 20 AT, CT 30S RIBOSOMAL PROTEIN S20 274
194 1I97 20 T 30S RIBOSOMAL PROTEIN S20 274
195 1I95 20 T 30S RIBOSOMAL PROTEIN S20 274
196 4V8O 20 AT 30S RIBOSOMAL PROTEIN S20 274
197 4V9M 19 AT, CT 30S ribosomal protein S20 274
198 4W29 19 AT, CT 30S ribosomal protein S20 274
199 4V4Y 22 AW 30S ribosomal protein S20 274
200 4V4X 22 AW 30S ribosomal protein S20 274
201 4V4Z 23 AW 30S ribosomal protein S20 274
202 5LMN 20 T 30S ribosomal protein S20 P80380 274
203 5LMO 20 T 30S ribosomal protein S20 274
204 5LMP 20 T 30S ribosomal protein S20 274
205 5LMQ 20 T 30S ribosomal protein S20 274
206 5LMR 20 T 30S ribosomal protein S20 274
207 5LMS 20 T 30S ribosomal protein S20 274
208 5LMT 20 T 30S ribosomal protein S20 274
209 5LMU 20 T 30S ribosomal protein S20 274
210 5LMV 20 T 30S ribosomal protein S20 274
211 5IMQ 27 X 30S ribosomal protein S20 274
212 5IMR 20 X 30S ribosomal protein S20 274
213 5A9Z 53 BX 30S ribosomal protein S20 274
214 5AA0 53 BX 30S ribosomal protein S20 274
215 4V5N 20 AT 30S RIBOSOMAL PROTEIN S20 274
216 4V5M 20 AT 30S RIBOSOMAL PROTEIN S20 274
217 4V68 13 AT 30S ribosomal protein S20 274