Sequence Similarity Clusters for the Entities in PDB 4JI8

Entity #1 | Chains: A
16S rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 269 39
95 % 57 270 53
90 % 57 270 58
70 % 57 270 68
50 % 75 420 26
40 % 75 420 38
30 % 81 527 32
Entity #11 | Chains: K
RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 271 35
95 % 57 271 49
90 % 57 271 54
70 % 57 271 64
50 % 69 414 32
40 % 77 536 19
30 % 77 536 31
Entity #12 | Chains: L
RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 22790
95 % 57 278 39
90 % 57 278 44
70 % 69 421 19
50 % 69 431 24
40 % 69 432 35
30 % 69 431 55
Entity #13 | Chains: M
RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 272 33
95 % 57 272 46
90 % 57 272 51
70 % 57 272 62
50 % 69 418 31
40 % 69 419 43
30 % 75 528 36
Entity #14 | Chains: N
RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 270 36
95 % 57 270 54
90 % 57 270 59
70 % 57 278 54
50 % 57 278 90
40 % 57 278 113
30 % 57 278 123
Entity #15 | Chains: O
RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 274 30
95 % 59 279 38
90 % 59 279 43
70 % 59 279 53
50 % 74 427 25
40 % 74 432 34
30 % 74 432 54
Entity #16 | Chains: P
RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 266 41
95 % 57 271 51
90 % 57 271 56
70 % 57 271 66
50 % 57 278 91
40 % 57 278 114
30 % 69 413 63
Entity #17 | Chains: Q
RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 49 178 58
95 % 57 265 56
90 % 57 269 60
70 % 57 269 69
50 % 57 269 94
40 % 57 269 117
30 % 57 269 128
Entity #18 | Chains: R
RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 50 185 56
95 % 51 236 65
90 % 51 236 69
70 % 51 236 81
50 % 51 236 111
40 % 51 236 135
30 % 51 236 144
Entity #19 | Chains: S
RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 58 274 29
95 % 58 274 42
90 % 58 274 48
70 % 58 274 58
50 % 70 420 28
40 % 70 423 40
30 % 70 420 57
Entity #2 | Chains: B
RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 271 31
95 % 57 272 43
90 % 57 272 49
70 % 57 272 59
50 % 69 409 36
40 % 69 418 45
30 % 69 414 62
Entity #20 | Chains: T
RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 219 50
95 % 57 270 52
90 % 57 270 57
70 % 57 270 67
50 % 57 270 93
40 % 57 270 116
30 % 57 270 127
Entity #21 | Chains: U
RIBOSOMAL PROTEIN THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 261 43
95 % 57 261 59
90 % 57 261 63
70 % 57 261 74
50 % 57 261 98
40 % 57 261 121
30 % 57 261 133
Entity #3 | Chains: C
RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 51 235 48
95 % 51 235 66
90 % 51 235 70
70 % 51 235 82
50 % 53 287 84
40 % 53 287 103
30 % 53 309 116
Entity #4 | Chains: D
RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 264 42
95 % 57 272 44
90 % 57 272 50
70 % 57 272 60
50 % 69 417 29
40 % 69 420 41
30 % 69 420 58
Entity #5 | Chains: E
RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 271 34
95 % 57 271 48
90 % 57 271 53
70 % 57 271 63
50 % 70 415 30
40 % 70 417 42
30 % 70 419 60
Entity #6 | Chains: F
RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 58 276 27
95 % 64 282 37
90 % 64 282 42
70 % 64 282 51
50 % 64 282 88
40 % 64 282 110
30 % 76 360 95
Entity #7 | Chains: G
RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 58 275 28
95 % 58 276 41
90 % 58 276 46
70 % 58 276 56
50 % 69 322 66
40 % 69 360 84
30 % 69 361 96
Entity #8 | Chains: H
RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 58 271 32
95 % 58 271 45
90 % 58 275 47
70 % 58 275 57
50 % 72 420 27
40 % 73 426 37
30 % 80 541 30
Entity #9 | Chains: I
RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 53 180 69
95 % 57 271 50
90 % 57 271 55
70 % 57 271 65
50 % 69 411 35
40 % 69 411 48
30 % 75 526 34

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4Y4O 51 1t, 2t 30S ribosomal protein S20 274
2 5J8B 53 t 30S ribosomal protein S20 274
3 4W2F 20 AT, CT 30S Ribosomal Protein S20 274
4 4Y4P 51 1t, 2t 30S ribosomal protein S20 274
5 5FDV 52 1t, 2t 30S ribosomal protein S20 274
6 5J4B 51 1t, 2t 30S ribosomal protein S20 274
7 4W2G 20 AT, CT 30S Ribosomal Protein S20 274
8 5W4K 51 1t, 2t 30S ribosomal protein S20 274
9 4LFB 20 T ribosomal protein S20 274
10 1VY4 20 AT, CT 30S ribosomal protein S20 274
11 5FDU 51 1t, 2t 30S ribosomal protein S20 274
12 4W2I 20 AT, CT 30S Ribosomal Protein S20 274
13 1VY5 20 AT, CT 30S ribosomal protein S20 274
14 5HCQ 51 1t, 2t 30S ribosomal protein S20 274
15 4WQF 53 BT, DT 30S ribosomal protein S20 274
16 4W2H 20 AT, CT 30S Ribosomal Protein S20 274
17 4WPO 53 BT, DT 30S ribosomal protein S20 274
18 4V8I 20 AT, CT 30S Ribosomal Protein S20 274
19 4JI1 20 T RIBOSOMAL PROTEIN S20 274
20 4Z3S 51 1t, 2t 30S ribosomal protein S20 274
21 5DOY 51 1t, 2t 30S Ribosomal Protein S20 274
22 5HD1 51 1t, 2t 30S ribosomal protein S20 274
23 4DR6 20 T 30S ribosomal protein S20 274
24 4LF7 20 T ribosomal protein S20 274
25 4LF8 20 T ribosomal protein S20 274
26 4WSD 20 BA, BI 30S ribosomal protein S20 274
27 4WQU 53 BT, DT 30S ribosomal protein S20 274
28 5E81 20 BA, BI 30S ribosomal protein S20 274
29 4Z8C 51 1t, 2t 30S ribosomal protein S20 274
30 5HCR 51 1t, 2t 30S ribosomal protein S20 274
31 2UUB 20 T 30S RIBOSOMAL PROTEIN S20 274
32 4DV6 20 T ribosomal protein S20 274
33 4JYA 20 T 30S ribosomal protein S20 274
34 5IBB 20 BA, BI 30S ribosomal protein S20 274
35 4DR5 20 T 30S ribosomal protein S20 274
36 5J4C 51 1t, 2t 30S ribosomal protein S20 274
37 4KHP 20 T 30S Ribosomal protein S20 274
38 4DR2 20 T 30S ribosomal protein S20 274
39 4WRO 24 BI 30S ribosomal protein S20 274
40 4WQ1 20 BA, BI 30S ribosomal protein S20 274
41 4LF9 20 T ribosomal protein S20 274
42 4WQY 53 BT, DT 30S ribosomal protein S20 274
43 4DUY 20 T ribosomal protein S20 274
44 4DV7 20 T ribosomal protein S20 274
45 4WRA 20 BA, BI 30S ribosomal protein S20 274
46 5IB7 20 BA, BI 30S ribosomal protein S20 274
47 4X64 20 T 30S ribosomal protein S20 274
48 5HCP 51 1t, 2t 30S ribosomal protein S20 274
49 4V9H 14 AT 30S ribosomal protein S20 274
50 4V8D 20 AW, CW 30S RIBOSOMAL PROTEIN S20 274
51 4DR3 20 T 30S ribosomal protein S20 274
52 4V90 20 AT 30S RIBOSOMAL PROTEIN S20 274
53 4JI3 20 T RIBOSOMAL PROTEIN S20 274
54 4WQR 20 BA, BI 30S ribosomal protein S20 274
55 4JI6 20 T RIBOSOMAL PROTEIN S20 274
56 4JI8 20 T RIBOSOMAL PROTEIN S20 274
57 5IB8 20 BA, BI 30S ribosomal protein S20 274
58 4V9R 20 AT, CT 30S Ribosomal Protein S20 274
59 5EL6 20 BA, BI 30S ribosomal protein S20 274
60 5EL7 20 BA, BI 30S ribosomal protein S20 274
61 5VP2 51 1t, 2t 30S ribosomal protein S20 274
62 4LF4 20 T ribosomal protein S20 274
63 5DFE 54 QT, XT 30S ribosomal protein S20 274
64 4LF6 20 T ribosomal protein S20 274
65 4JI7 20 T RIBOSOMAL PROTEIN S20 274
66 4WU1 20 BA, BI 30S ribosomal protein S20 274
67 5EL4 20 BA, BI 30S ribosomal protein S20 274
68 4WR6 20 BA, BI 30S ribosomal protein S20 274
69 4V8B 20 AW, CW 30S RIBOSOMAL PROTEIN S20 274
70 5HAU 53 1t, 2t 30S ribosomal protein S20 274
71 2UUA 20 T 30S RIBOSOMAL PROTEIN S20 274
72 4V87 50 BW, CW 30S RIBOSOMAL PROTEIN S20 274
73 4V95 20 AT, CT 30S Ribosomal Protein S20 274
74 1VY7 20 AT, CT 30S ribosomal protein S20 274
75 5E7K 20 BA, BI 30S ribosomal protein S20 274
76 5EL5 20 BA, BI 30S ribosomal protein S20 274
77 4LNT 20 QT, XT 30S ribosomal protein S20 274
78 4DR1 20 T 30S ribosomal protein S20 274
79 4LFA 20 T ribosomal protein S20 274
80 4DV4 20 T ribosomal protein S20 274
81 4YZV 20 QT, XT 30S ribosomal protein S20 274
82 4JI0 20 T ribosomal protein S20 274
83 5IWA 19 T 30S ribosomal protein S20 274
84 4V9S 20 AT, CT 30S Ribosomal Protein S20 274
85 4JI2 20 T RIBOSOMAL PROTEIN S20 274
86 4JV5 20 T 30S ribosomal protein 20 274
87 4DR7 20 T 30S ribosomal protein S20 274
88 4DUZ 20 T ribosomal protein S20 274
89 4X65 20 T 30S ribosomal protein S20 274
90 4V8G 20 AT, CT 30S Ribosomal Protein S20 274
91 4DV3 20 T ribosomal protein S20 274
92 4DV5 20 T ribosomal protein S20 274
93 2UUC 20 T 30S RIBOSOMAL PROTEIN S20 274
94 4LFC 20 T ribosomal protein S20 274
95 4WZO 20 BA, BI 30S ribosomal protein S20 274
96 4JI4 20 T RIBOSOMAL PROTEIN S20 274
97 1VY6 20 AT, CT 30S ribosomal protein S20 274
98 1XMQ 22 T 30S Ribosomal Protein S20 274
99 4DV0 20 T ribosomal protein S20 274
100 4V9B 20 AW, CW 30S RIBOSOMAL PROTEIN S20 274
101 4V6F 50 BW, CW 30S ribosomal protein S20 274
102 4X62 20 T 30S ribosomal protein S20 274
103 4V8F 50 BW, CW 30S RIBOSOMAL PROTEIN S20 274
104 4DV2 20 T ribosomal protein S20 274
105 4DV1 20 T ribosomal protein S20 274
106 1N32 22 T 30S RIBOSOMAL PROTEIN S20 274
107 5F8K 51 1t, 2t 30S ribosomal protein S20 274
108 1I94 20 T 30S RIBOSOMAL PROTEIN S20 274
109 4V8H 20 AT, CT 30S Ribosomal Protein S20 274
110 4JI5 20 T RIBOSOMAL PROTEIN S20 274
111 4K0K 20 T 30S ribosomal protein S20 274
112 4W2E 53 t 30S ribosomal protein S20 274
113 4V8C 50 CW, DW 30S RIBOSOMAL PROTEIN S20 274
114 5BR8 20 T 30S ribosomal protein S20 274
115 4LF5 20 T ribosomal protein S20 274
116 4V9A 20 AW, CW 30S RIBOSOMAL PROTEIN S20 274
117 4V5J 20 AT, CT 30S RIBOSOMAL PROTEIN S20 274
118 4V7Y 20 AT, CT 30S ribosomal protein S20 274
119 4V8E 50 BW, DW 30S RIBOSOMAL PROTEIN S20 274
120 5J30 51 QT, XT 30S ribosomal protein S20 274
121 4DR4 20 T 30S ribosomal protein S20 274
122 4WZD 20 BA, BI 30S ribosomal protein S20 274
123 4X66 20 T 30S ribosomal protein S20 274
124 2UU9 20 T 30S RIBOSOMAL PROTEIN S20 274
125 4V8Q 54 BT 30S RIBOSOMAL PROTEIN S20 274
126 4W4G 20 QT, XT 30S ribosomal protein S20 274
127 4NXM 20 T ribosomal protein S20 274
128 4V5L 20 AT 30S RIBOSOMAL PROTEIN S20 274
129 4YPB 20 QT, XT 30S ribosomal protein S20 274
130 4V7X 20 AT, CT 30S ribosomal protein S20 274
131 4ZER 51 1t, 2t 30S ribosomal protein S20 274
132 1IBL 23 T 30S RIBOSOMAL PROTEIN S20 274
133 4V7W 20 AT, CT 30S ribosomal protein S20 274
134 4WT1 20 BA, BI 30S ribosomal protein S20 274
135 4WT8 20 AU, BU 30S ribosomal protein S20 274
136 5DOX 51 1t, 2t 30S ribosomal protein S20 274
137 4NXN 20 T ribosomal protein S20 274
138 1XNR 22 T 16S Ribosomal protein S20 274
139 4LT8 20 QT, XT 30S ribosomal protein S20 274
140 4V51 20 AT, CT 30S RIBOSOMAL PROTEIN S20 274
141 4V7L 20 AT, CT 30S ribosomal protein S20 274
142 4V5R 20 AT, CT 30S RIBOSOMAL PROTEIN S20 274
143 1XNQ 22 T Ribosomal protein S20 274
144 4V8A 50 CT, DT 30S ribosomal protein S20 274
145 4V5K 20 AT, CT 30S RIBOSOMAL PROTEIN S20 274
146 4V5Q 20 AT, CT 30S RIBOSOMAL PROTEIN S20 274
147 4V7J 19 At, Bt 30S ribosomal protein S20 274
148 5J3C 51 QT, XT 30S ribosomal protein S20 274
149 4V5C 20 AT, CT 30S RIBOSOMAL PROTEIN S20 274
150 4V5E 20 AT, CT 30S RIBOSOMAL PROTEIN S20 274
151 4L47 20 QT, XT 30S ribosomal protein S20 274
152 4V5P 20 AT, CT 30S RIBOSOMAL PROTEIN S20 274
153 4ZSN 20 QT, XT 30S ribosomal protein S20 274
154 4V5D 20 AT, CT 30S RIBOSOMAL PROTEIN S20 274
155 4V7Z 20 AT, CT 30S ribosomal protein S20 274
156 4V8X 20 AT, CT 30S RIBOSOMAL PROTEIN S20 274
157 4V5S 20 AT, CT 30S RIBOSOMAL PROTEIN S20 274
158 4V9I 20 AT, CT 30S Ribosomal protein S20 274
159 1XMO 22 T 30S ribosomal protein S20 274
160 1N33 22 T 30S RIBOSOMAL PROTEIN S20 274
161 1IBK 21 T 30S RIBOSOMAL PROTEIN S20 274
162 4V6G 20 AW, CW 30S RIBOSOMAL PROTEIN S20 274
163 4V8N 20 AT, CT 30S RIBOSOMAL PROTEIN S20 274
164 4V97 20 AT, CT 30S ribosomal protein S20 274
165 4V7M 20 AT, CT 30S ribosomal protein S20 274
166 4WSM 20 BA, BI 30S ribosomal protein S20 274
167 4TUD 20 QT, XT 30S ribosomal protein S20 274
168 1IBM 23 T 30S RIBOSOMAL PROTEIN S20 274
169 4V6A 20 AT, CT 30S ribosomal protein S20 274
170 4TUE 20 QT, XT 30S ribosomal protein S20 274
171 4TUA 20 QT, XT 30S ribosomal protein S20 274
172 4V7K 19 At, Bt 30S ribosomal protein S20 274
173 4YY3 20 T 30S ribosomal protein S20 274
174 4TUC 20 QT, XT 30S ribosomal protein S20 274
175 4YHH 20 T 30S ribosomal protein S20 274
176 4TUB 20 QT, XT 30S ribosomal protein S20 274
177 4P70 20 QT, XT 30S ribosomal protein S20 274
178 4V8U 20 AT, CT 30S RIBOSOMAL PROTEIN S20 274
179 4LSK 20 QT, XT 30S ribosomal protein S20 274
180 4P6F 20 QT, XT 30S ribosomal protein S20 274
181 4V5F 20 AT, CT 30S RIBOSOMAL PROTEIN S20 274
182 1VVJ 20 QT, XT 30S ribosomal protein S20 274
183 4LFZ 20 QT, XT 30S ribosomal protein S20 274
184 5CZP 51 QT, XT 30S ribosomal protein S20 274
185 2HHH 20 T 30S ribosomal protein S20 274
186 4OX9 20 T 30S ribosomal protein S20 274
187 1I96 20 T 30S RIBOSOMAL PROTEIN S20 274
188 1N34 21 T 30S RIBOSOMAL PROTEIN S20 274
189 4V5A 20 AT, CT 30S RIBOSOMAL PROTEIN S20 274
190 4L71 20 QT, XT 30S ribosomal protein S20 274
191 4V8J 20 AT, CT 30S ribosomal protein S20 274
192 1N36 20 T 30S RIBOSOMAL PROTEIN S20 274
193 4LEL 20 QT, XT 30S ribosomal protein S20 274
194 4V9L 19 AT, CT 30S ribosomal protein S20 274
195 4V5G 20 AT, CT 30S RIBOSOMAL PROTEIN S20 274
196 1I97 20 T 30S RIBOSOMAL PROTEIN S20 274
197 1I95 20 T 30S RIBOSOMAL PROTEIN S20 274
198 4V8O 20 AT 30S RIBOSOMAL PROTEIN S20 274
199 4V9M 19 AT, CT 30S ribosomal protein S20 274
200 4W29 19 AT, CT 30S ribosomal protein S20 274
201 4V4Y 22 AW 30S ribosomal protein S20 274
202 4V4X 22 AW 30S ribosomal protein S20 274
203 4V4Z 23 AW 30S ribosomal protein S20 274
204 5LMN 20 T 30S ribosomal protein S20 P80380 274
205 5LMO 20 T 30S ribosomal protein S20 274
206 5LMP 20 T 30S ribosomal protein S20 274
207 5LMQ 20 T 30S ribosomal protein S20 274
208 5LMR 20 T 30S ribosomal protein S20 274
209 5LMS 20 T 30S ribosomal protein S20 274
210 5LMT 20 T 30S ribosomal protein S20 274
211 5LMU 20 T 30S ribosomal protein S20 274
212 5LMV 20 T 30S ribosomal protein S20 274
213 5IMQ 27 X 30S ribosomal protein S20 274
214 5IMR 20 X 30S ribosomal protein S20 274
215 5A9Z 53 BX 30S ribosomal protein S20 274
216 5AA0 53 BX 30S ribosomal protein S20 274
217 4V5N 20 AT 30S RIBOSOMAL PROTEIN S20 274
218 4V5M 20 AT 30S RIBOSOMAL PROTEIN S20 274
219 4V68 13 AT 30S ribosomal protein S20 274