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Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Sequence Clustering and Redundancy Reduction Results
4JI8
Cluster # 67 Members. Sequence cutoff: 95% Cluster size: 176 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 3A1P 2 B, D 30S ribosomal protein S19 300852  
2 4Y4O 50 1s, 2s 30S ribosomal protein S19 300852  
3 4W2F 19 AS, CS 30S Ribosomal Protein S19 300852  
4 4Y4P 50 1s, 2s 30S ribosomal protein S19 300852  
5 4W2G 19 AS, CS 30S Ribosomal Protein S19 300852  
6 4LFB 19 S ribosomal protein S19 300852  
7 1VY4 19 AS, CS 30S ribosomal protein S19 300852  
8 4W2I 19 AS, CS 30S Ribosomal Protein S19 300852  
9 1VY5 19 AS, CS 30S ribosomal protein S19 300852  
10 4WQF 52 BS, DS 30S ribosomal protein S19 300852  
11 4W2H 19 AS, CS 30S Ribosomal Protein S19 300852  
12 4WPO 52 BS, DS 30S ribosomal protein S19 300852  
13 4V8I 19 AS, CS 30S Ribosomal Protein S19 274  
14 4JI1 19 S RIBOSOMAL PROTEIN S19 300852  
15 4DR6 19 S 30S ribosomal protein S19 300852  
16 4LF7 19 S ribosomal protein S19 300852  
17 4LF8 19 S ribosomal protein S19 300852  
18 4WQU 52 BS, DS 30S ribosomal protein S19 300852  
19 2VQE 19 S 30S RIBOSOMAL PROTEIN S19 300852  
20 2UUB 19 S 30S RIBOSOMAL PROTEIN S19 300852  
21 4DV6 19 S ribosomal protein S19 300852  
22 4DR5 19 S 30S ribosomal protein S19 300852  
23 4DR2 19 S 30S ribosomal protein S19 300852  
24 4LF9 19 S ribosomal protein S19 300852  
25 4WQY 52 BS, DS 30S ribosomal protein S19 300852  
26 4DUY 19 S ribosomal protein S19 300852  
27 4DV7 19 S ribosomal protein S19 300852  
28 4V8D 19 AV, CV 30S RIBOSOMAL PROTEIN S19 300852  
29 4DR3 19 S 30S ribosomal protein S19 300852  
30 4V90 19 AS 30S RIBOSOMAL PROTEIN S19 300852  
31 4JI3 19 S RIBOSOMAL PROTEIN S19 300852  
32 4JI6 19 S RIBOSOMAL PROTEIN S19 300852  
33 4JI8 19 S RIBOSOMAL PROTEIN S19 300852  
34 2UXC 19 S RIBOSOMAL PROTEIN S19 300852  
35 4V9R 19 AS, CS 30S Ribosomal Protein S19 274  
36 4B3M 19 S 30S RIBOSOMAL PROTEIN S19 300852  
37 4LF4 19 S ribosomal protein S19 300852  
38 4LF6 19 S ribosomal protein S19 300852  
39 4JI7 19 S RIBOSOMAL PROTEIN S19 300852  
40 4B3T 19 S 30S RIBOSOMAL PROTEIN S19 300852  
41 4V8B 19 AV, CV 30S RIBOSOMAL PROTEIN S19 300852  
42 2VQF 19 S 30S RIBOSOMAL PROTEIN S19 300852  
43 2UUA 19 S 30S RIBOSOMAL PROTEIN S19 300852  
44 4V87 49 BV, CV 30S RIBOSOMAL PROTEIN S19 300852  
45 4V95 19 AS, CS 30S Ribosomal Protein S19 274  
46 1VY7 19 AS, CS 30S ribosomal protein S19 300852  
47 4B3R 19 S 30S RIBOSOMAL PROTEIN S19 300852  
48 4LNT 19 QS, XS 30S ribosomal protein S19 300852  
49 4DR1 19 S 30S ribosomal protein S19 300852  
50 4LFA 19 S ribosomal protein S19 300852  
51 4DV4 19 S ribosomal protein S19 300852  
52 4JI0 19 S ribosomal protein S19 300852  
53 4V9S 19 AS, CS 30S Ribosomal Protein S19 274  
54 4JI2 19 S RIBOSOMAL PROTEIN S19 300852  
55 4DR7 19 S 30S ribosomal protein S19 300852  
56 1J5E 19 S 30S RIBOSOMAL PROTEIN S19 274  
57 4DUZ 19 S ribosomal protein S19 300852  
58 4V8G 19 AS, CS 30S Ribosomal Protein S19 300852  
59 4DV3 19 S ribosomal protein S19 300852  
60 4DV5 19 S ribosomal protein S19 300852  
61 2UUC 19 S 30S RIBOSOMAL PROTEIN S19 300852  
62 4LFC 19 S ribosomal protein S19 300852  
63 1FJG 20 S 30S RIBOSOMAL PROTEIN S19 274  
64 3T1Y 19 S 30S ribosomal protein S19 300852  
65 4JI4 19 S RIBOSOMAL PROTEIN S19 300852  
66 1VY6 19 AS, CS 30S ribosomal protein S19 300852  
67 1XMQ 21 S 30S Ribosomal Protein S19 274  
68 4DV0 19 S ribosomal protein S19 300852  
69 4V9B 19 AV, CV 30S RIBOSOMAL PROTEIN S19 300852  
70 4V6F 49 BV, CV 30S ribosomal protein S19 300852  
71 4V8F 49 BV, CV 30S RIBOSOMAL PROTEIN S19 300852  
72 4B3S 19 S 30S RIBOSOMAL PROTEIN S19 300852  
73 4DV2 19 S ribosomal protein S19 300852  
74 4DV1 19 S ribosomal protein S19 300852  
75 1N32 21 S 30S RIBOSOMAL PROTEIN S19 274  
76 1I94 19 S 30S RIBOSOMAL PROTEIN S19 274  
77 4V8H 19 AS, CS 30S Ribosomal Protein S19 300852  
78 4JI5 19 S RIBOSOMAL PROTEIN S19 300852  
79 4W2E 52 s 30S ribosomal protein S19 300852  
80 4V8C 49 CV, DV 30S RIBOSOMAL PROTEIN S19 300852  
81 4LF5 19 S ribosomal protein S19 300852  
82 4V9A 19 AV, CV 30S RIBOSOMAL PROTEIN S19 300852  
83 4V5J 19 AS, CS 30S RIBOSOMAL PROTEIN S19 300852  
84 4V7Y 19 AS, CS 30S ribosomal protein S19 300852  
85 4V8E 49 BV, DV 30S RIBOSOMAL PROTEIN S19 300852  
86 4DR4 19 S 30S ribosomal protein S19 300852  
87 3OTO 19 S 30S RIBOSOMAL PROTEIN S19 300852  
88 2UU9 19 S 30S RIBOSOMAL PROTEIN S19 300852  
89 4V8Q 53 BS 30S RIBOSOMAL PROTEIN S19 300852  
90 1HR0 20 S 30S RIBOSOMAL PROTEIN S19 274  
91 4AQY 19 S 30S RIBOSOMAL PROTEIN S19 274  
92 4NXM 19 S ribosomal protein S19 300852  
93 4V5L 19 AS 30S RIBOSOMAL PROTEIN S19 300852  
94 4V7X 19 AS, CS 30S ribosomal protein S19 300852  
95 1IBL 22 S 30S RIBOSOMAL PROTEIN S19 274  
96 4V7W 19 AS, CS 30S ribosomal protein S19 300852  
97 4NXN 19 S ribosomal protein S19 300852  
98 1XNR 21 S 16S Ribosomal protein S19 274  
99 4LT8 19 QS, XS 30S ribosomal protein S19 300852  
100 4V51 19 AS, CS 30S RIBOSOMAL PROTEIN S19 300852  
101 4V7L 19 AS, CS 30S ribosomal protein S19 300852  
102 4V5R 19 AS, CS 30S RIBOSOMAL PROTEIN S19 300852  
103 1HNZ 20 S 30S RIBOSOMAL PROTEIN S19 274  
104 1XNQ 21 S Ribosomal protein S19 274  
105 4V8A 49 CS, DS 30S ribosomal protein S19 300852  
106 4V5K 19 AS, CS 30S RIBOSOMAL PROTEIN S19 300852  
107 4V5Q 19 AS, CS 30S RIBOSOMAL PROTEIN S19 300852  
108 4V7J 18 As, Bs 30S ribosomal protein S19 300852  
109 4V5C 19 AS, CS 30S RIBOSOMAL PROTEIN S19 300852  
110 4V5E 19 AS, CS 30S RIBOSOMAL PROTEIN S19 300852  
111 4L47 19 QS, XS 30S ribosomal protein S19 300852  
112 4V5P 19 AS, CS 30S RIBOSOMAL PROTEIN S19 300852  
113 4V5D 19 AS, CS 30S RIBOSOMAL PROTEIN S19 300852  
114 4V7Z 19 AS, CS 30S ribosomal protein S19 300852  
115 4V8X 19 AS, CS 30S RIBOSOMAL PROTEIN S19 300852  
116 4V5S 19 AS, CS 30S RIBOSOMAL PROTEIN S19 300852  
117 1XMO 21 S 30S ribosomal protein S19 274  
118 3T1H 19 S 30S ribosomal protein S19 300852  
119 2UXD 19 S RIBOSOMAL PROTEIN S19 300852  
120 1N33 21 S 30S RIBOSOMAL PROTEIN S19 274  
121 1IBK 20 S 30S RIBOSOMAL PROTEIN S19 274  
122 4V6G 19 AV, CV 30S RIBOSOMAL PROTEIN S19 300852  
123 4V8N 19 AS, CS 30S RIBOSOMAL PROTEIN S19 300852  
124 4V97 19 AS, CS 30S ribosomal protein S19 300852  
125 1HNW 20 S 30S RIBOSOMAL PROTEIN S19 274  
126 4V7M 19 AS, CS 30S ribosomal protein S19 300852  
127 1IBM 22 S 30S RIBOSOMAL PROTEIN S19 274  
128 4V6A 19 AS, CS 30S ribosomal protein S19 300852  
129 4V7K 18 As, Bs 30S ribosomal protein S19 300852  
130 1HNX 20 S 30S RIBOSOMAL PROTEIN S19 274  
131 4P70 19 QS, XS 30S ribosomal protein S19 300852  
132 4V8U 19 AS, CS 30S RIBOSOMAL PROTEIN S19 300852  
133 4LSK 19 QS, XS 30S ribosomal protein S19 300852  
134 4P6F 19 QS, XS 30S ribosomal protein S19 300852  
135 4V67 21 AS, CS 30S ribosomal protein S19 274  
136 4V5F 19 AS, CS 30S RIBOSOMAL PROTEIN S19 300852  
137 1VVJ 19 QS, XS 30S ribosomal protein S19 300852  
138 4LFZ 19 QS, XS 30S ribosomal protein S19 300852  
139 2E5L 20 S 30S ribosomal protein S19 274  
140 2HHH 19 S 30S ribosomal protein S19 300852  
141 4OX9 19 S 30S ribosomal protein S19 300852  
142 2UXB 19 S RIBOSOMAL PROTEIN S19 300852  
143 1I96 19 S 30S RIBOSOMAL PROTEIN S19 274  
144 1N34 20 S 30S RIBOSOMAL PROTEIN S19 274  
145 4V5A 19 AS, CS 30S RIBOSOMAL PROTEIN S19 300852  
146 4V63 21 AS, CS 30S ribosomal protein S19 262724  
147 4L71 19 QS, XS 30S ribosomal protein S19 300852  
148 4KVB 18 S 30S ribosomal protein S19 262724  
149 4V8J 19 AS, CS 30S ribosomal protein S19 300852  
150 1N36 19 S 30S RIBOSOMAL PROTEIN S19 274  
151 2ZM6 19 S 30S ribosomal protein S19 274  
152 4LEL 19 QS, XS 30S ribosomal protein S19 300852  
153 2F4V 20 S 30S ribosomal protein S19 274  
154 1FKA 19 S 30S RIBOSOMAL PROTEIN S19 274  
155 4V5G 19 AS, CS 30S RIBOSOMAL PROTEIN S19 300852  
156 1I97 19 S 30S RIBOSOMAL PROTEIN S19 274  
157 1I95 19 S 30S RIBOSOMAL PROTEIN S19 274  
158 4V8O 19 AS 30S RIBOSOMAL PROTEIN S19 300852  
159 4V4Y 21 AV 30S ribosomal protein S19 300852  
160 4V4J 52 t 30S ribosomal protein S19 262724  
161 4V4X 21 AV 30S ribosomal protein S19 300852  
162 4V4Z 22 AV 30S ribosomal protein S19 300852  
163 4V4I 52 t 30S ribosomal protein S19 262724  
164 4V4P 54 BV 30S ribosomal protein S19 300852  
165 4V4R 22 AS 30S ribosomal protein S19 300852  
166 4V4S 22 AS 30S ribosomal protein S19 300852  
167 4V4T 22 AS 30S ribosomal protein S19 300852  
168 4V5N 19 AS 30S RIBOSOMAL PROTEIN S19 300852  
169 4V5M 19 AS 30S RIBOSOMAL PROTEIN S19 300852  
170 1ML5 24 V 30S RIBOSOMAL PROTEIN S19 562  
171 1JGO 22 V 30S RIBOSOMAL PROTEIN S19 274  
172 1JGP 22 V 30S RIBOSOMAL PROTEIN S19 274  
173 1JGQ 22 V 30S RIBOSOMAL PROTEIN S19 274  
174 4V42 22 AV 30S RIBOSOMAL PROTEIN S19 274  
175 1QKH 1 A 30S RIBOSOMAL PROTEIN S19 274  
176 1QKF 1 A 30S RIBOSOMAL PROTEIN S19 274  
 
Sequence Clusters for the Sequence Entities in PDB 4JI8
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 196 28
95% 35 197 44
90% 35 197 46
70% 35 197 58
50% 46 280 35
40% 46 280 45
30% 51 331 46
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 198 24
95% 35 198 40
90% 35 198 42
70% 35 198 54
50% 40 274 42
40% 47 330 35
30% 47 330 47
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 17888
95% 35 205 31
90% 35 205 33
70% 40 286 24
50% 40 286 34
40% 40 286 44
30% 40 286 69
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 199 21
95% 35 199 37
90% 35 199 39
70% 35 199 51
50% 40 279 39
40% 40 279 51
30% 45 331 49
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 197 25
95% 35 197 45
90% 35 197 47
70% 35 197 59
50% 35 197 92
40% 35 197 114
30% 35 197 137
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 201 19
95% 37 206 30
90% 37 206 32
70% 37 206 43
50% 45 287 33
40% 45 287 43
30% 45 287 68
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 193 29
95% 35 198 42
90% 35 198 44
70% 35 198 56
50% 35 198 90
40% 35 198 112
30% 40 277 75
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 112 66
95% 35 192 49
90% 35 196 48
70% 35 196 60
50% 35 196 93
40% 35 196 116
30% 35 196 139
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 125 58
95% 32 174 71
90% 32 174 75
70% 32 174 88
50% 32 174 128
40% 32 174 146
30% 32 174 164
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 176 45
95% 33 176 67
90% 33 176 70
70% 33 176 83
50% 41 277 38
40% 41 277 48
30% 41 277 72
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 198 22
95% 35 199 34
90% 35 199 37
70% 35 199 48
50% 35 199 88
40% 40 274 53
30% 40 274 74
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 148 54
95% 35 197 43
90% 35 197 45
70% 35 197 57
50% 35 197 91
40% 35 197 113
30% 35 197 136
Entity #21: Chains: U - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 188 31
95% 35 188 51
90% 35 188 54
70% 35 188 66
50% 35 188 111
40% 35 188 133
30% 35 188 153
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 173 48
95% 32 173 72
90% 32 173 76
70% 32 173 90
50% 33 213 75
40% 33 213 102
30% 33 213 122
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 191 30
95% 35 199 35
90% 35 199 38
70% 35 199 49
50% 40 274 40
40% 40 275 52
30% 40 275 73
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 198 23
95% 35 198 39
90% 35 198 41
70% 35 198 53
50% 41 278 37
40% 41 278 47
30% 41 280 71
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 203 17
95% 42 209 29
90% 42 209 31
70% 42 209 42
50% 42 209 80
40% 42 209 106
30% 48 247 87
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 202 18
95% 36 203 32
90% 36 203 34
70% 36 203 45
50% 41 245 53
40% 41 246 70
30% 41 246 94
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 198 20
95% 36 198 36
90% 36 202 35
70% 36 202 46
50% 43 280 36
40% 44 282 46
30% 50 335 44
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 108 87
95% 35 198 41
90% 35 198 43
70% 35 198 55
50% 40 274 41
40% 40 274 54
30% 45 326 51
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.