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Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Sequence Clustering and Redundancy Reduction Results
4JI8
Cluster # 59 Members. Sequence cutoff: 95% Cluster size: 170 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 3A1P 2 B, D 30S ribosomal protein S19 300852  
2 4W2F 19 AS, CS 30S Ribosomal Protein S19 300852  
3 4W2G 19 AS, CS 30S Ribosomal Protein S19 300852  
4 4LFB 19 S ribosomal protein S19 300852  
5 1VY4 19 AS, CS 30S ribosomal protein S19 300852  
6 4W2I 19 AS, CS 30S Ribosomal Protein S19 300852  
7 1VY5 19 AS, CS 30S ribosomal protein S19 300852  
8 4W2H 19 AS, CS 30S Ribosomal Protein S19 300852  
9 4V8I 19 AS, CS 30S Ribosomal Protein S19 274  
10 4JI1 19 S RIBOSOMAL PROTEIN S19 300852  
11 4DR6 19 S 30S ribosomal protein S19 300852  
12 4LF7 19 S ribosomal protein S19 300852  
13 4LF8 19 S ribosomal protein S19 300852  
14 2VQE 19 S 30S RIBOSOMAL PROTEIN S19 300852  
15 2UUB 19 S 30S RIBOSOMAL PROTEIN S19 300852  
16 4DV6 19 S ribosomal protein S19 300852  
17 4DR5 19 S 30S ribosomal protein S19 300852  
18 4DR2 19 S 30S ribosomal protein S19 300852  
19 4LF9 19 S ribosomal protein S19 300852  
20 4DUY 19 S ribosomal protein S19 300852  
21 4DV7 19 S ribosomal protein S19 300852  
22 4V8D 19 AV, CV 30S RIBOSOMAL PROTEIN S19 300852  
23 4DR3 19 S 30S ribosomal protein S19 300852  
24 4V90 19 AS 30S RIBOSOMAL PROTEIN S19 300852  
25 4JI3 19 S RIBOSOMAL PROTEIN S19 300852  
26 4JI6 19 S RIBOSOMAL PROTEIN S19 300852  
27 4JI8 19 S RIBOSOMAL PROTEIN S19 300852  
28 2UXC 19 S RIBOSOMAL PROTEIN S19 300852  
29 4V9R 19 AS, CS 30S Ribosomal Protein S19 274  
30 4B3M 19 S 30S RIBOSOMAL PROTEIN S19 300852  
31 4LF4 19 S ribosomal protein S19 300852  
32 4LF6 19 S ribosomal protein S19 300852  
33 4JI7 19 S RIBOSOMAL PROTEIN S19 300852  
34 4B3T 19 S 30S RIBOSOMAL PROTEIN S19 300852  
35 4V8B 19 AV, CV 30S RIBOSOMAL PROTEIN S19 300852  
36 2VQF 19 S 30S RIBOSOMAL PROTEIN S19 300852  
37 2UUA 19 S 30S RIBOSOMAL PROTEIN S19 300852  
38 4V87 49 BV, CV 30S RIBOSOMAL PROTEIN S19 300852  
39 4V95 19 AS, CS 30S Ribosomal Protein S19 274  
40 1VY7 19 AS, CS 30S ribosomal protein S19 300852  
41 4B3R 19 S 30S RIBOSOMAL PROTEIN S19 300852  
42 4LNT 19 QS, XS 30S ribosomal protein S19 300852  
43 4DR1 19 S 30S ribosomal protein S19 300852  
44 4LFA 19 S ribosomal protein S19 300852  
45 4DV4 19 S ribosomal protein S19 300852  
46 4JI0 19 S ribosomal protein S19 300852  
47 4V9S 19 AS, CS 30S Ribosomal Protein S19 274  
48 4JI2 19 S RIBOSOMAL PROTEIN S19 300852  
49 4DR7 19 S 30S ribosomal protein S19 300852  
50 1J5E 19 S 30S RIBOSOMAL PROTEIN S19 274  
51 4DUZ 19 S ribosomal protein S19 300852  
52 4V8G 19 AS, CS 30S Ribosomal Protein S19 300852  
53 4DV3 19 S ribosomal protein S19 300852  
54 4DV5 19 S ribosomal protein S19 300852  
55 2UUC 19 S 30S RIBOSOMAL PROTEIN S19 300852  
56 4LFC 19 S ribosomal protein S19 300852  
57 1FJG 20 S 30S RIBOSOMAL PROTEIN S19 274  
58 3T1Y 19 S 30S ribosomal protein S19 300852  
59 4JI4 19 S RIBOSOMAL PROTEIN S19 300852  
60 1VY6 19 AS, CS 30S ribosomal protein S19 300852  
61 1XMQ 21 S 30S Ribosomal Protein S19 274  
62 4DV0 19 S ribosomal protein S19 300852  
63 4V9B 19 AV, CV 30S RIBOSOMAL PROTEIN S19 300852  
64 4V6F 49 BV, CV 30S ribosomal protein S19 300852  
65 4V8F 49 BV, CV 30S RIBOSOMAL PROTEIN S19 300852  
66 4B3S 19 S 30S RIBOSOMAL PROTEIN S19 300852  
67 4DV2 19 S ribosomal protein S19 300852  
68 4DV1 19 S ribosomal protein S19 300852  
69 1N32 21 S 30S RIBOSOMAL PROTEIN S19 274  
70 1I94 19 S 30S RIBOSOMAL PROTEIN S19 274  
71 4V8H 19 AS, CS 30S Ribosomal Protein S19 300852  
72 4JI5 19 S RIBOSOMAL PROTEIN S19 300852  
73 4W2E 52 s 30S ribosomal protein S19 300852  
74 4V8C 49 CV, DV 30S RIBOSOMAL PROTEIN S19 300852  
75 4LF5 19 S ribosomal protein S19 300852  
76 4V9A 19 AV, CV 30S RIBOSOMAL PROTEIN S19 300852  
77 4V5J 19 AS, CS 30S RIBOSOMAL PROTEIN S19 300852  
78 4V7Y 19 AS, CS 30S ribosomal protein S19 300852  
79 4V8E 49 BV, DV 30S RIBOSOMAL PROTEIN S19 300852  
80 4DR4 19 S 30S ribosomal protein S19 300852  
81 3OTO 19 S 30S RIBOSOMAL PROTEIN S19 300852  
82 2UU9 19 S 30S RIBOSOMAL PROTEIN S19 300852  
83 4V8Q 53 BS 30S RIBOSOMAL PROTEIN S19 300852  
84 1HR0 20 S 30S RIBOSOMAL PROTEIN S19 274  
85 4AQY 19 S 30S RIBOSOMAL PROTEIN S19 274  
86 4NXM 19 S ribosomal protein S19 300852  
87 4V5L 19 AS 30S RIBOSOMAL PROTEIN S19 300852  
88 4V7X 19 AS, CS 30S ribosomal protein S19 300852  
89 1IBL 22 S 30S RIBOSOMAL PROTEIN S19 274  
90 4V7W 19 AS, CS 30S ribosomal protein S19 300852  
91 4NXN 19 S ribosomal protein S19 300852  
92 1XNR 21 S 16S Ribosomal protein S19 274  
93 4LT8 19 QS, XS 30S ribosomal protein S19 300852  
94 4V51 19 AS, CS 30S RIBOSOMAL PROTEIN S19 300852  
95 4V7L 19 AS, CS 30S ribosomal protein S19 300852  
96 4V5R 19 AS, CS 30S RIBOSOMAL PROTEIN S19 300852  
97 1HNZ 20 S 30S RIBOSOMAL PROTEIN S19 274  
98 1XNQ 21 S Ribosomal protein S19 274  
99 4V8A 49 CS, DS 30S ribosomal protein S19 300852  
100 4V5K 19 AS, CS 30S RIBOSOMAL PROTEIN S19 300852  
101 4V5Q 19 AS, CS 30S RIBOSOMAL PROTEIN S19 300852  
102 4V7J 18 As, Bs 30S ribosomal protein S19 300852  
103 4V5C 19 AS, CS 30S RIBOSOMAL PROTEIN S19 300852  
104 4V5E 19 AS, CS 30S RIBOSOMAL PROTEIN S19 300852  
105 4L47 19 QS, XS 30S ribosomal protein S19 300852  
106 4V5P 19 AS, CS 30S RIBOSOMAL PROTEIN S19 300852  
107 4V5D 19 AS, CS 30S RIBOSOMAL PROTEIN S19 300852  
108 4V7Z 19 AS, CS 30S ribosomal protein S19 300852  
109 4V8X 19 AS, CS 30S RIBOSOMAL PROTEIN S19 300852  
110 4V5S 19 AS, CS 30S RIBOSOMAL PROTEIN S19 300852  
111 1XMO 21 S 30S ribosomal protein S19 274  
112 3T1H 19 S 30S ribosomal protein S19 300852  
113 2UXD 19 S RIBOSOMAL PROTEIN S19 300852  
114 1N33 21 S 30S RIBOSOMAL PROTEIN S19 274  
115 1IBK 20 S 30S RIBOSOMAL PROTEIN S19 274  
116 4V6G 19 AV, CV 30S RIBOSOMAL PROTEIN S19 300852  
117 4V8N 19 AS, CS 30S RIBOSOMAL PROTEIN S19 300852  
118 4V97 19 AS, CS 30S ribosomal protein S19 300852  
119 1HNW 20 S 30S RIBOSOMAL PROTEIN S19 274  
120 4V7M 19 AS, CS 30S ribosomal protein S19 300852  
121 1IBM 22 S 30S RIBOSOMAL PROTEIN S19 274  
122 4V6A 19 AS, CS 30S ribosomal protein S19 300852  
123 4V7K 18 As, Bs 30S ribosomal protein S19 300852  
124 1HNX 20 S 30S RIBOSOMAL PROTEIN S19 274  
125 4P70 19 QS, XS 30S ribosomal protein S19 300852  
126 4V8U 19 AS, CS 30S RIBOSOMAL PROTEIN S19 300852  
127 4LSK 19 QS, XS 30S ribosomal protein S19 300852  
128 4P6F 19 QS, XS 30S ribosomal protein S19 300852  
129 4V67 21 AS, CS 30S ribosomal protein S19 274  
130 4V5F 19 AS, CS 30S RIBOSOMAL PROTEIN S19 300852  
131 1VVJ 19 QS, XS 30S ribosomal protein S19 300852  
132 4LFZ 19 QS, XS 30S ribosomal protein S19 300852  
133 2E5L 20 S 30S ribosomal protein S19 274  
134 2HHH 19 S 30S ribosomal protein S19 300852  
135 4OX9 19 S 30S ribosomal protein S19 300852  
136 2UXB 19 S RIBOSOMAL PROTEIN S19 300852  
137 1I96 19 S 30S RIBOSOMAL PROTEIN S19 274  
138 1N34 20 S 30S RIBOSOMAL PROTEIN S19 274  
139 4V5A 19 AS, CS 30S RIBOSOMAL PROTEIN S19 300852  
140 4V63 21 AS, CS 30S ribosomal protein S19 262724  
141 4L71 19 QS, XS 30S ribosomal protein S19 300852  
142 4KVB 18 S 30S ribosomal protein S19 262724  
143 4V8J 19 AS, CS 30S ribosomal protein S19 300852  
144 1N36 19 S 30S RIBOSOMAL PROTEIN S19 274  
145 2ZM6 19 S 30S ribosomal protein S19 274  
146 4LEL 19 QS, XS 30S ribosomal protein S19 300852  
147 2F4V 20 S 30S ribosomal protein S19 274  
148 1FKA 19 S 30S RIBOSOMAL PROTEIN S19 274  
149 4V5G 19 AS, CS 30S RIBOSOMAL PROTEIN S19 300852  
150 1I97 19 S 30S RIBOSOMAL PROTEIN S19 274  
151 1I95 19 S 30S RIBOSOMAL PROTEIN S19 274  
152 4V8O 19 AS 30S RIBOSOMAL PROTEIN S19 300852  
153 4V4Y 21 AV 30S ribosomal protein S19 300852  
154 4V4J 52 t 30S ribosomal protein S19 262724  
155 4V4X 21 AV 30S ribosomal protein S19 300852  
156 4V4Z 22 AV 30S ribosomal protein S19 300852  
157 4V4I 52 t 30S ribosomal protein S19 262724  
158 4V4P 54 BV 30S ribosomal protein S19 300852  
159 4V4R 22 AS 30S ribosomal protein S19 300852  
160 4V4S 22 AS 30S ribosomal protein S19 300852  
161 4V4T 22 AS 30S ribosomal protein S19 300852  
162 4V5N 19 AS 30S RIBOSOMAL PROTEIN S19 300852  
163 4V5M 19 AS 30S RIBOSOMAL PROTEIN S19 300852  
164 1ML5 24 V 30S RIBOSOMAL PROTEIN S19 562  
165 1JGO 22 V 30S RIBOSOMAL PROTEIN S19 274  
166 1JGP 22 V 30S RIBOSOMAL PROTEIN S19 274  
167 1JGQ 22 V 30S RIBOSOMAL PROTEIN S19 274  
168 4V42 22 AV 30S RIBOSOMAL PROTEIN S19 274  
169 1QKH 1 A 30S RIBOSOMAL PROTEIN S19 274  
170 1QKF 1 A 30S RIBOSOMAL PROTEIN S19 274  
 
Sequence Clusters for the Sequence Entities in PDB 4JI8
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 187 27
95% 29 188 47
90% 29 188 50
70% 29 188 60
50% 39 269 34
40% 39 269 46
30% 39 274 65
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 189 25
95% 29 189 43
90% 29 189 46
70% 29 189 56
50% 33 263 41
40% 40 316 35
30% 40 316 44
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 17436
95% 29 196 35
90% 29 196 37
70% 33 275 24
50% 33 275 33
40% 33 275 45
30% 33 275 68
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 190 22
95% 29 190 41
90% 29 190 44
70% 29 190 54
50% 33 268 38
40% 33 268 51
30% 38 317 50
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 188 26
95% 29 188 48
90% 29 188 51
70% 29 188 61
50% 29 188 94
40% 29 188 119
30% 29 188 142
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 192 20
95% 31 197 33
90% 31 197 35
70% 31 197 47
50% 38 276 32
40% 38 276 43
30% 38 276 67
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 184 28
95% 29 189 45
90% 29 189 48
70% 29 189 58
50% 29 189 92
40% 29 189 117
30% 33 266 76
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 21 104 54
95% 29 183 49
90% 29 187 52
70% 29 187 62
50% 29 187 95
40% 29 187 120
30% 29 187 143
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 119 48
95% 26 168 61
90% 26 168 64
70% 26 168 80
50% 26 168 117
40% 26 168 139
30% 26 168 161
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 170 37
95% 27 170 59
90% 27 170 63
70% 27 170 78
50% 34 266 37
40% 34 266 49
30% 34 266 72
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 189 23
95% 29 190 38
90% 29 190 42
70% 29 190 52
50% 29 190 91
40% 33 263 53
30% 33 263 75
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 140 42
95% 29 188 46
90% 29 188 49
70% 29 188 59
50% 29 188 93
40% 29 188 118
30% 29 188 141
Entity #21: Chains: U - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 179 34
95% 29 179 53
90% 29 179 55
70% 29 179 68
50% 29 179 105
40% 29 179 132
30% 29 179 151
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 26 166 38
95% 26 166 63
90% 26 166 66
70% 26 166 82
50% 27 206 75
40% 27 206 100
30% 27 206 120
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 182 29
95% 29 190 39
90% 29 190 43
70% 29 190 53
50% 33 263 39
40% 33 264 52
30% 33 264 74
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 189 24
95% 29 189 42
90% 29 189 45
70% 29 189 55
50% 34 267 36
40% 34 267 48
30% 34 269 71
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 194 18
95% 36 200 29
90% 36 200 30
70% 36 200 44
50% 36 200 86
40% 36 200 108
30% 41 236 94
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 193 19
95% 30 194 36
90% 30 194 38
70% 30 194 49
50% 34 234 56
40% 34 235 74
30% 34 235 96
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 189 21
95% 30 189 40
90% 30 193 39
70% 30 193 51
50% 36 269 35
40% 37 271 47
30% 43 321 43
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 102 76
95% 29 189 44
90% 29 189 47
70% 29 189 57
50% 33 263 40
40% 33 263 54
30% 38 312 53
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.