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Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Sequence Clustering and Redundancy Reduction Results
4JI8
Cluster # 47 Members. Sequence cutoff: 100% Cluster size: 174 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 3A1P 2 B, D 30S ribosomal protein S19 300852  
2 4W2F 19 AS, CS 30S Ribosomal Protein S19 300852  
3 4W2G 19 AS, CS 30S Ribosomal Protein S19 300852  
4 4LFB 19 S ribosomal protein S19 300852  
5 1VY4 19 AS, CS 30S ribosomal protein S19 300852  
6 4W2I 19 AS, CS 30S Ribosomal Protein S19 300852  
7 1VY5 19 AS, CS 30S ribosomal protein S19 300852  
8 4WQF 52 BS, DS 30S ribosomal protein S19 300852  
9 4W2H 19 AS, CS 30S Ribosomal Protein S19 300852  
10 4WPO 52 BS, DS 30S ribosomal protein S19 300852  
11 4V8I 19 AS, CS 30S Ribosomal Protein S19 274  
12 4JI1 19 S RIBOSOMAL PROTEIN S19 300852  
13 4DR6 19 S 30S ribosomal protein S19 300852  
14 4LF7 19 S ribosomal protein S19 300852  
15 4LF8 19 S ribosomal protein S19 300852  
16 4WQU 52 BS, DS 30S ribosomal protein S19 300852  
17 2VQE 19 S 30S RIBOSOMAL PROTEIN S19 300852  
18 2UUB 19 S 30S RIBOSOMAL PROTEIN S19 300852  
19 4DV6 19 S ribosomal protein S19 300852  
20 4DR5 19 S 30S ribosomal protein S19 300852  
21 4DR2 19 S 30S ribosomal protein S19 300852  
22 4LF9 19 S ribosomal protein S19 300852  
23 4WQY 52 BS, DS 30S ribosomal protein S19 300852  
24 4DUY 19 S ribosomal protein S19 300852  
25 4DV7 19 S ribosomal protein S19 300852  
26 4V8D 19 AV, CV 30S RIBOSOMAL PROTEIN S19 300852  
27 4DR3 19 S 30S ribosomal protein S19 300852  
28 4V90 19 AS 30S RIBOSOMAL PROTEIN S19 300852  
29 4JI3 19 S RIBOSOMAL PROTEIN S19 300852  
30 4JI6 19 S RIBOSOMAL PROTEIN S19 300852  
31 4JI8 19 S RIBOSOMAL PROTEIN S19 300852  
32 2UXC 19 S RIBOSOMAL PROTEIN S19 300852  
33 4V9R 19 AS, CS 30S Ribosomal Protein S19 274  
34 4B3M 19 S 30S RIBOSOMAL PROTEIN S19 300852  
35 4LF4 19 S ribosomal protein S19 300852  
36 4LF6 19 S ribosomal protein S19 300852  
37 4JI7 19 S RIBOSOMAL PROTEIN S19 300852  
38 4B3T 19 S 30S RIBOSOMAL PROTEIN S19 300852  
39 4V8B 19 AV, CV 30S RIBOSOMAL PROTEIN S19 300852  
40 2VQF 19 S 30S RIBOSOMAL PROTEIN S19 300852  
41 2UUA 19 S 30S RIBOSOMAL PROTEIN S19 300852  
42 4V87 49 BV, CV 30S RIBOSOMAL PROTEIN S19 300852  
43 4V95 19 AS, CS 30S Ribosomal Protein S19 274  
44 1VY7 19 AS, CS 30S ribosomal protein S19 300852  
45 4B3R 19 S 30S RIBOSOMAL PROTEIN S19 300852  
46 4LNT 19 QS, XS 30S ribosomal protein S19 300852  
47 4DR1 19 S 30S ribosomal protein S19 300852  
48 4LFA 19 S ribosomal protein S19 300852  
49 4DV4 19 S ribosomal protein S19 300852  
50 4JI0 19 S ribosomal protein S19 300852  
51 4V9S 19 AS, CS 30S Ribosomal Protein S19 274  
52 4JI2 19 S RIBOSOMAL PROTEIN S19 300852  
53 4DR7 19 S 30S ribosomal protein S19 300852  
54 1J5E 19 S 30S RIBOSOMAL PROTEIN S19 274  
55 4DUZ 19 S ribosomal protein S19 300852  
56 4V8G 19 AS, CS 30S Ribosomal Protein S19 300852  
57 4DV3 19 S ribosomal protein S19 300852  
58 4DV5 19 S ribosomal protein S19 300852  
59 2UUC 19 S 30S RIBOSOMAL PROTEIN S19 300852  
60 4LFC 19 S ribosomal protein S19 300852  
61 1FJG 20 S 30S RIBOSOMAL PROTEIN S19 274  
62 3T1Y 19 S 30S ribosomal protein S19 300852  
63 4JI4 19 S RIBOSOMAL PROTEIN S19 300852  
64 1VY6 19 AS, CS 30S ribosomal protein S19 300852  
65 1XMQ 21 S 30S Ribosomal Protein S19 274  
66 4DV0 19 S ribosomal protein S19 300852  
67 4V9B 19 AV, CV 30S RIBOSOMAL PROTEIN S19 300852  
68 4V6F 49 BV, CV 30S ribosomal protein S19 300852  
69 4V8F 49 BV, CV 30S RIBOSOMAL PROTEIN S19 300852  
70 4B3S 19 S 30S RIBOSOMAL PROTEIN S19 300852  
71 4DV2 19 S ribosomal protein S19 300852  
72 4DV1 19 S ribosomal protein S19 300852  
73 1N32 21 S 30S RIBOSOMAL PROTEIN S19 274  
74 1I94 19 S 30S RIBOSOMAL PROTEIN S19 274  
75 4V8H 19 AS, CS 30S Ribosomal Protein S19 300852  
76 4JI5 19 S RIBOSOMAL PROTEIN S19 300852  
77 4W2E 52 s 30S ribosomal protein S19 300852  
78 4V8C 49 CV, DV 30S RIBOSOMAL PROTEIN S19 300852  
79 4LF5 19 S ribosomal protein S19 300852  
80 4V9A 19 AV, CV 30S RIBOSOMAL PROTEIN S19 300852  
81 4V5J 19 AS, CS 30S RIBOSOMAL PROTEIN S19 300852  
82 4V7Y 19 AS, CS 30S ribosomal protein S19 300852  
83 4V8E 49 BV, DV 30S RIBOSOMAL PROTEIN S19 300852  
84 4DR4 19 S 30S ribosomal protein S19 300852  
85 3OTO 19 S 30S RIBOSOMAL PROTEIN S19 300852  
86 2UU9 19 S 30S RIBOSOMAL PROTEIN S19 300852  
87 4V8Q 53 BS 30S RIBOSOMAL PROTEIN S19 300852  
88 1HR0 20 S 30S RIBOSOMAL PROTEIN S19 274  
89 4AQY 19 S 30S RIBOSOMAL PROTEIN S19 274  
90 4NXM 19 S ribosomal protein S19 300852  
91 4V5L 19 AS 30S RIBOSOMAL PROTEIN S19 300852  
92 4V7X 19 AS, CS 30S ribosomal protein S19 300852  
93 1IBL 22 S 30S RIBOSOMAL PROTEIN S19 274  
94 4V7W 19 AS, CS 30S ribosomal protein S19 300852  
95 4NXN 19 S ribosomal protein S19 300852  
96 1XNR 21 S 16S Ribosomal protein S19 274  
97 4LT8 19 QS, XS 30S ribosomal protein S19 300852  
98 4V51 19 AS, CS 30S RIBOSOMAL PROTEIN S19 300852  
99 4V7L 19 AS, CS 30S ribosomal protein S19 300852  
100 4V5R 19 AS, CS 30S RIBOSOMAL PROTEIN S19 300852  
101 1HNZ 20 S 30S RIBOSOMAL PROTEIN S19 274  
102 1XNQ 21 S Ribosomal protein S19 274  
103 4V8A 49 CS, DS 30S ribosomal protein S19 300852  
104 4V5K 19 AS, CS 30S RIBOSOMAL PROTEIN S19 300852  
105 4V5Q 19 AS, CS 30S RIBOSOMAL PROTEIN S19 300852  
106 4V7J 18 As, Bs 30S ribosomal protein S19 300852  
107 4V5C 19 AS, CS 30S RIBOSOMAL PROTEIN S19 300852  
108 4V5E 19 AS, CS 30S RIBOSOMAL PROTEIN S19 300852  
109 4L47 19 QS, XS 30S ribosomal protein S19 300852  
110 4V5P 19 AS, CS 30S RIBOSOMAL PROTEIN S19 300852  
111 4V5D 19 AS, CS 30S RIBOSOMAL PROTEIN S19 300852  
112 4V7Z 19 AS, CS 30S ribosomal protein S19 300852  
113 4V8X 19 AS, CS 30S RIBOSOMAL PROTEIN S19 300852  
114 4V5S 19 AS, CS 30S RIBOSOMAL PROTEIN S19 300852  
115 1XMO 21 S 30S ribosomal protein S19 274  
116 3T1H 19 S 30S ribosomal protein S19 300852  
117 2UXD 19 S RIBOSOMAL PROTEIN S19 300852  
118 1N33 21 S 30S RIBOSOMAL PROTEIN S19 274  
119 1IBK 20 S 30S RIBOSOMAL PROTEIN S19 274  
120 4V6G 19 AV, CV 30S RIBOSOMAL PROTEIN S19 300852  
121 4V8N 19 AS, CS 30S RIBOSOMAL PROTEIN S19 300852  
122 4V97 19 AS, CS 30S ribosomal protein S19 300852  
123 1HNW 20 S 30S RIBOSOMAL PROTEIN S19 274  
124 4V7M 19 AS, CS 30S ribosomal protein S19 300852  
125 1IBM 22 S 30S RIBOSOMAL PROTEIN S19 274  
126 4V6A 19 AS, CS 30S ribosomal protein S19 300852  
127 4V7K 18 As, Bs 30S ribosomal protein S19 300852  
128 1HNX 20 S 30S RIBOSOMAL PROTEIN S19 274  
129 4P70 19 QS, XS 30S ribosomal protein S19 300852  
130 4V8U 19 AS, CS 30S RIBOSOMAL PROTEIN S19 300852  
131 4LSK 19 QS, XS 30S ribosomal protein S19 300852  
132 4P6F 19 QS, XS 30S ribosomal protein S19 300852  
133 4V67 21 AS, CS 30S ribosomal protein S19 274  
134 4V5F 19 AS, CS 30S RIBOSOMAL PROTEIN S19 300852  
135 1VVJ 19 QS, XS 30S ribosomal protein S19 300852  
136 4LFZ 19 QS, XS 30S ribosomal protein S19 300852  
137 2E5L 20 S 30S ribosomal protein S19 274  
138 2HHH 19 S 30S ribosomal protein S19 300852  
139 4OX9 19 S 30S ribosomal protein S19 300852  
140 2UXB 19 S RIBOSOMAL PROTEIN S19 300852  
141 1I96 19 S 30S RIBOSOMAL PROTEIN S19 274  
142 1N34 20 S 30S RIBOSOMAL PROTEIN S19 274  
143 4V5A 19 AS, CS 30S RIBOSOMAL PROTEIN S19 300852  
144 4V63 21 AS, CS 30S ribosomal protein S19 262724  
145 4L71 19 QS, XS 30S ribosomal protein S19 300852  
146 4KVB 18 S 30S ribosomal protein S19 262724  
147 4V8J 19 AS, CS 30S ribosomal protein S19 300852  
148 1N36 19 S 30S RIBOSOMAL PROTEIN S19 274  
149 2ZM6 19 S 30S ribosomal protein S19 274  
150 4LEL 19 QS, XS 30S ribosomal protein S19 300852  
151 2F4V 20 S 30S ribosomal protein S19 274  
152 1FKA 19 S 30S RIBOSOMAL PROTEIN S19 274  
153 4V5G 19 AS, CS 30S RIBOSOMAL PROTEIN S19 300852  
154 1I97 19 S 30S RIBOSOMAL PROTEIN S19 274  
155 1I95 19 S 30S RIBOSOMAL PROTEIN S19 274  
156 4V8O 19 AS 30S RIBOSOMAL PROTEIN S19 300852  
157 4V4Y 21 AV 30S ribosomal protein S19 300852  
158 4V4J 52 t 30S ribosomal protein S19 262724  
159 4V4X 21 AV 30S ribosomal protein S19 300852  
160 4V4Z 22 AV 30S ribosomal protein S19 300852  
161 4V4I 52 t 30S ribosomal protein S19 262724  
162 4V4P 54 BV 30S ribosomal protein S19 300852  
163 4V4R 22 AS 30S ribosomal protein S19 300852  
164 4V4S 22 AS 30S ribosomal protein S19 300852  
165 4V4T 22 AS 30S ribosomal protein S19 300852  
166 4V5N 19 AS 30S RIBOSOMAL PROTEIN S19 300852  
167 4V5M 19 AS 30S RIBOSOMAL PROTEIN S19 300852  
168 1ML5 24 V 30S RIBOSOMAL PROTEIN S19 562  
169 1JGO 22 V 30S RIBOSOMAL PROTEIN S19 274  
170 1JGP 22 V 30S RIBOSOMAL PROTEIN S19 274  
171 1JGQ 22 V 30S RIBOSOMAL PROTEIN S19 274  
172 4V42 22 AV 30S RIBOSOMAL PROTEIN S19 274  
173 1QKH 1 A 30S RIBOSOMAL PROTEIN S19 274  
174 1QKF 1 A 30S RIBOSOMAL PROTEIN S19 274  
 
Sequence Clusters for the Sequence Entities in PDB 4JI8
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 194 28
95% 33 195 46
90% 33 195 48
70% 33 195 59
50% 43 276 35
40% 43 276 45
30% 48 327 46
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 196 26
95% 33 196 42
90% 33 196 44
70% 33 196 55
50% 37 270 42
40% 44 326 35
30% 44 326 47
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 17801
95% 33 203 31
90% 33 203 33
70% 37 282 24
50% 37 282 34
40% 37 282 44
30% 37 282 69
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 197 23
95% 33 197 38
90% 33 197 40
70% 33 197 52
50% 37 275 39
40% 37 275 52
30% 42 327 48
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 195 27
95% 33 195 47
90% 33 195 49
70% 33 195 60
50% 33 195 93
40% 33 195 116
30% 33 195 139
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 199 19
95% 35 204 30
90% 35 204 32
70% 35 204 44
50% 42 283 33
40% 42 283 43
30% 42 283 68
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 191 29
95% 33 196 44
90% 33 196 46
70% 33 196 57
50% 33 196 90
40% 33 196 114
30% 37 273 77
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 110 66
95% 33 190 49
90% 33 194 50
70% 33 194 61
50% 33 194 94
40% 33 194 117
30% 33 194 141
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 123 60
95% 30 172 70
90% 30 172 74
70% 30 172 88
50% 30 172 125
40% 30 172 146
30% 30 172 165
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 174 47
95% 31 174 69
90% 31 174 73
70% 31 174 87
50% 38 273 38
40% 38 273 50
30% 38 273 73
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 196 24
95% 33 197 35
90% 33 197 38
70% 33 197 50
50% 33 197 89
40% 37 270 54
30% 37 270 76
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 146 54
95% 33 195 45
90% 33 195 47
70% 33 195 58
50% 33 195 92
40% 33 195 115
30% 33 195 138
Entity #21: Chains: U - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 186 32
95% 33 186 51
90% 33 186 54
70% 33 186 66
50% 33 186 111
40% 33 186 134
30% 33 186 152
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 171 48
95% 30 171 73
90% 30 171 76
70% 30 171 90
50% 31 210 77
40% 31 210 101
30% 31 210 122
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 189 30
95% 33 197 36
90% 33 197 39
70% 33 197 51
50% 37 270 40
40% 37 271 53
30% 37 271 75
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 196 25
95% 33 196 40
90% 33 196 42
70% 33 196 54
50% 38 274 37
40% 38 274 49
30% 38 276 71
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 201 17
95% 40 207 29
90% 40 207 31
70% 40 207 42
50% 40 207 82
40% 40 207 108
30% 45 244 91
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 200 18
95% 34 201 33
90% 34 201 35
70% 34 201 46
50% 38 242 55
40% 38 243 71
30% 38 243 95
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 196 22
95% 34 196 37
90% 34 200 36
70% 34 200 47
50% 40 276 36
40% 41 278 46
30% 47 331 45
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 106 87
95% 33 196 43
90% 33 196 45
70% 33 196 56
50% 37 270 41
40% 37 270 55
30% 42 322 50
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.