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Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Sequence Clustering and Redundancy Reduction Results
4JI8
Cluster # 19 Members. Sequence cutoff: 100% Cluster size: 202 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 3A1P 2 B, D 30S ribosomal protein S19 300852  
2 4Y4O 50 1s, 2s 30S ribosomal protein S19 300852  
3 4W2F 19 AS, CS 30S Ribosomal Protein S19 300852  
4 4Y4P 50 1s, 2s 30S ribosomal protein S19 300852  
5 4W2G 19 AS, CS 30S Ribosomal Protein S19 300852  
6 4LFB 19 S ribosomal protein S19 300852  
7 1VY4 19 AS, CS 30S ribosomal protein S19 300852  
8 4W2I 19 AS, CS 30S Ribosomal Protein S19 300852  
9 1VY5 19 AS, CS 30S ribosomal protein S19 300852  
10 4WQF 52 BS, DS 30S ribosomal protein S19 300852  
11 4W2H 19 AS, CS 30S Ribosomal Protein S19 300852  
12 4WPO 52 BS, DS 30S ribosomal protein S19 300852  
13 4V8I 19 AS, CS 30S Ribosomal Protein S19 274  
14 4JI1 19 S RIBOSOMAL PROTEIN S19 300852  
15 4DR6 19 S 30S ribosomal protein S19 300852  
16 4LF7 19 S ribosomal protein S19 300852  
17 4LF8 19 S ribosomal protein S19 300852  
18 4WQU 52 BS, DS 30S ribosomal protein S19 300852  
19 2VQE 19 S 30S RIBOSOMAL PROTEIN S19 300852  
20 2UUB 19 S 30S RIBOSOMAL PROTEIN S19 300852  
21 4DV6 19 S ribosomal protein S19 300852  
22 4JYA 19 S 30S ribosomal protein S19 300852  
23 4DR5 19 S 30S ribosomal protein S19 300852  
24 4KHP 19 S 30S Ribosomal protein S19 300852  
25 4DR2 19 S 30S ribosomal protein S19 300852  
26 4LF9 19 S ribosomal protein S19 300852  
27 4WQY 52 BS, DS 30S ribosomal protein S19 300852  
28 4DUY 19 S ribosomal protein S19 300852  
29 4DV7 19 S ribosomal protein S19 300852  
30 4V9H 13 AS 30S ribosomal protein S19 300852  
31 4V8D 19 AV, CV 30S RIBOSOMAL PROTEIN S19 300852  
32 4DR3 19 S 30S ribosomal protein S19 300852  
33 4V90 19 AS 30S RIBOSOMAL PROTEIN S19 300852  
34 4JI3 19 S RIBOSOMAL PROTEIN S19 300852  
35 4JI6 19 S RIBOSOMAL PROTEIN S19 300852  
36 4JI8 19 S RIBOSOMAL PROTEIN S19 300852  
37 2UXC 19 S RIBOSOMAL PROTEIN S19 300852  
38 4V9R 19 AS, CS 30S Ribosomal Protein S19 274  
39 4B3M 19 S 30S RIBOSOMAL PROTEIN S19 300852  
40 4LF4 19 S ribosomal protein S19 300852  
41 4LF6 19 S ribosomal protein S19 300852  
42 4JI7 19 S RIBOSOMAL PROTEIN S19 300852  
43 4B3T 19 S 30S RIBOSOMAL PROTEIN S19 300852  
44 4V8B 19 AV, CV 30S RIBOSOMAL PROTEIN S19 300852  
45 2VQF 19 S 30S RIBOSOMAL PROTEIN S19 300852  
46 2UUA 19 S 30S RIBOSOMAL PROTEIN S19 300852  
47 4V87 49 BV, CV 30S RIBOSOMAL PROTEIN S19 300852  
48 4V95 19 AS, CS 30S Ribosomal Protein S19 274  
49 1VY7 19 AS, CS 30S ribosomal protein S19 300852  
50 4B3R 19 S 30S RIBOSOMAL PROTEIN S19 300852  
51 4LNT 19 QS, XS 30S ribosomal protein S19 300852  
52 4DR1 19 S 30S ribosomal protein S19 300852  
53 4LFA 19 S ribosomal protein S19 300852  
54 4DV4 19 S ribosomal protein S19 300852  
55 4JI0 19 S ribosomal protein S19 300852  
56 4V9S 19 AS, CS 30S Ribosomal Protein S19 274  
57 4JI2 19 S RIBOSOMAL PROTEIN S19 300852  
58 4JV5 19 S 30S ribosomal protein S19 300852  
59 4DR7 19 S 30S ribosomal protein S19 300852  
60 1J5E 19 S 30S RIBOSOMAL PROTEIN S19 274  
61 4GKK 19 S 30S ribosomal protein S19 300852  
62 4DUZ 19 S ribosomal protein S19 300852  
63 4V8G 19 AS, CS 30S Ribosomal Protein S19 300852  
64 4GKJ 19 S 30S ribosomal protein S19 300852  
65 4DV3 19 S ribosomal protein S19 300852  
66 4DV5 19 S ribosomal protein S19 300852  
67 2UUC 19 S 30S RIBOSOMAL PROTEIN S19 300852  
68 4LFC 19 S ribosomal protein S19 300852  
69 1FJG 20 S 30S RIBOSOMAL PROTEIN S19 274  
70 3T1Y 19 S 30S ribosomal protein S19 300852  
71 4JI4 19 S RIBOSOMAL PROTEIN S19 300852  
72 1VY6 19 AS, CS 30S ribosomal protein S19 300852  
73 1XMQ 21 S 30S Ribosomal Protein S19 274  
74 4DV0 19 S ribosomal protein S19 300852  
75 4V9B 19 AV, CV 30S RIBOSOMAL PROTEIN S19 300852  
76 4V6F 49 BV, CV 30S ribosomal protein S19 300852  
77 4V8F 49 BV, CV 30S RIBOSOMAL PROTEIN S19 300852  
78 4B3S 19 S 30S RIBOSOMAL PROTEIN S19 300852  
79 4DV2 19 S ribosomal protein S19 300852  
80 4DV1 19 S ribosomal protein S19 300852  
81 1N32 21 S 30S RIBOSOMAL PROTEIN S19 274  
82 1I94 19 S 30S RIBOSOMAL PROTEIN S19 274  
83 4V8H 19 AS, CS 30S Ribosomal Protein S19 300852  
84 4JI5 19 S RIBOSOMAL PROTEIN S19 300852  
85 4K0K 19 S 30S ribosomal protein S19 300852  
86 4W2E 52 s 30S ribosomal protein S19 300852  
87 4V8C 49 CV, DV 30S RIBOSOMAL PROTEIN S19 300852  
88 4LF5 19 S ribosomal protein S19 300852  
89 4V9A 19 AV, CV 30S RIBOSOMAL PROTEIN S19 300852  
90 4V5J 19 AS, CS 30S RIBOSOMAL PROTEIN S19 300852  
91 4V7Y 19 AS, CS 30S ribosomal protein S19 300852  
92 4V8E 49 BV, DV 30S RIBOSOMAL PROTEIN S19 300852  
93 4DR4 19 S 30S ribosomal protein S19 300852  
94 3OTO 19 S 30S RIBOSOMAL PROTEIN S19 300852  
95 2UU9 19 S 30S RIBOSOMAL PROTEIN S19 300852  
96 4V8Q 53 BS 30S RIBOSOMAL PROTEIN S19 300852  
97 1HR0 20 S 30S RIBOSOMAL PROTEIN S19 274  
98 4AQY 19 S 30S RIBOSOMAL PROTEIN S19 274  
99 4NXM 19 S ribosomal protein S19 300852  
100 4V5L 19 AS 30S RIBOSOMAL PROTEIN S19 300852  
101 4V7X 19 AS, CS 30S ribosomal protein S19 300852  
102 1IBL 22 S 30S RIBOSOMAL PROTEIN S19 274  
103 4V7W 19 AS, CS 30S ribosomal protein S19 300852  
104 4WUS 20 T 30S ribosomal protein S19 300852  
105 4WT8 19 T 30S ribosomal protein S19 300852  
106 4NXN 19 S ribosomal protein S19 300852  
107 1XNR 21 S 16S Ribosomal protein S19 274  
108 4LT8 19 QS, XS 30S ribosomal protein S19 300852  
109 4V51 19 AS, CS 30S RIBOSOMAL PROTEIN S19 300852  
110 4V7L 19 AS, CS 30S ribosomal protein S19 300852  
111 4V5R 19 AS, CS 30S RIBOSOMAL PROTEIN S19 300852  
112 1HNZ 20 S 30S RIBOSOMAL PROTEIN S19 274  
113 1XNQ 21 S Ribosomal protein S19 274  
114 4V8A 49 CS, DS 30S ribosomal protein S19 300852  
115 4V5K 19 AS, CS 30S RIBOSOMAL PROTEIN S19 300852  
116 4V5Q 19 AS, CS 30S RIBOSOMAL PROTEIN S19 300852  
117 4V7J 18 As, Bs 30S ribosomal protein S19 300852  
118 4V5C 19 AS, CS 30S RIBOSOMAL PROTEIN S19 300852  
119 4V5E 19 AS, CS 30S RIBOSOMAL PROTEIN S19 300852  
120 4L47 19 QS, XS 30S ribosomal protein S19 300852  
121 4V5P 19 AS, CS 30S RIBOSOMAL PROTEIN S19 300852  
122 4V5D 19 AS, CS 30S RIBOSOMAL PROTEIN S19 300852  
123 4V7Z 19 AS, CS 30S ribosomal protein S19 300852  
124 4V8X 19 AS, CS 30S RIBOSOMAL PROTEIN S19 300852  
125 4V5S 19 AS, CS 30S RIBOSOMAL PROTEIN S19 300852  
126 4V9I 19 AS, CS 30S Ribosomal protein S19 300852  
127 1XMO 21 S 30S ribosomal protein S19 274  
128 3T1H 19 S 30S ribosomal protein S19 300852  
129 2UXD 19 S RIBOSOMAL PROTEIN S19 300852  
130 1N33 21 S 30S RIBOSOMAL PROTEIN S19 274  
131 1IBK 20 S 30S RIBOSOMAL PROTEIN S19 274  
132 4V6G 19 AV, CV 30S RIBOSOMAL PROTEIN S19 300852  
133 4V8N 19 AS, CS 30S RIBOSOMAL PROTEIN S19 300852  
134 4V97 19 AS, CS 30S ribosomal protein S19 300852  
135 1HNW 20 S 30S RIBOSOMAL PROTEIN S19 274  
136 4V7M 19 AS, CS 30S ribosomal protein S19 300852  
137 1IBM 22 S 30S RIBOSOMAL PROTEIN S19 274  
138 4V6A 19 AS, CS 30S ribosomal protein S19 300852  
139 4V84 19 AS, CS 30S ribosomal protein S19 262724  
140 4V7K 18 As, Bs 30S ribosomal protein S19 300852  
141 1HNX 20 S 30S RIBOSOMAL PROTEIN S19 274  
142 4V9Q 49 BS, DS 30S ribosomal protein S19 262724  
143 4YHH 19 S 30S ribosomal protein S19 262724  
144 4V9N 22 AS, CS 30S ribosomal protein S19 262724  
145 4P70 19 QS, XS 30S ribosomal protein S19 300852  
146 4V8U 19 AS, CS 30S RIBOSOMAL PROTEIN S19 300852  
147 4LSK 19 QS, XS 30S ribosomal protein S19 300852  
148 4P6F 19 QS, XS 30S ribosomal protein S19 300852  
149 4V67 21 AS, CS 30S ribosomal protein S19 274  
150 4V83 19 AS, CS 30S ribosomal protein S19 262724  
151 4V5F 19 AS, CS 30S RIBOSOMAL PROTEIN S19 300852  
152 1VVJ 19 QS, XS 30S ribosomal protein S19 300852  
153 4LFZ 19 QS, XS 30S ribosomal protein S19 300852  
154 2E5L 20 S 30S ribosomal protein S19 274  
155 2HHH 19 S 30S ribosomal protein S19 300852  
156 4OX9 19 S 30S ribosomal protein S19 300852  
157 2UXB 19 S RIBOSOMAL PROTEIN S19 300852  
158 1I96 19 S 30S RIBOSOMAL PROTEIN S19 274  
159 4V9K 18 AS, CS 30S ribosomal protein S19 262724  
160 1N34 20 S 30S RIBOSOMAL PROTEIN S19 274  
161 4V5A 19 AS, CS 30S RIBOSOMAL PROTEIN S19 300852  
162 4V63 21 AS, CS 30S ribosomal protein S19 262724  
163 4L71 19 QS, XS 30S ribosomal protein S19 300852  
164 4KVB 18 S 30S ribosomal protein S19 262724  
165 4XEJ 46 AS19, BS19 30S ribosomal protein S19 262724  
166 4V7P 19 AS, DS 30S ribosomal protein S19 262724  
167 4V8J 19 AS, CS 30S ribosomal protein S19 300852  
168 1N36 19 S 30S RIBOSOMAL PROTEIN S19 274  
169 2ZM6 19 S 30S ribosomal protein S19 274  
170 4LEL 19 QS, XS 30S ribosomal protein S19 300852  
171 2F4V 20 S 30S ribosomal protein S19 274  
172 4V9L 18 AS, CS 30S ribosomal protein S19 262724  
173 1FKA 19 S 30S RIBOSOMAL PROTEIN S19 274  
174 4V5G 19 AS, CS 30S RIBOSOMAL PROTEIN S19 300852  
175 1I97 19 S 30S RIBOSOMAL PROTEIN S19 274  
176 4V9J 18 AS, CS 30S ribosomal protein S19 262724  
177 1I95 19 S 30S RIBOSOMAL PROTEIN S19 274  
178 4V8O 19 AS 30S RIBOSOMAL PROTEIN S19 300852  
179 4V9M 18 AS, CS 30S ribosomal protein S19 262724  
180 4W29 18 AS, CS 30S ribosomal protein S19 262724  
181 4V4Y 21 AV 30S ribosomal protein S19 300852  
182 4V4J 52 t 30S ribosomal protein S19 262724  
183 4V4X 21 AV 30S ribosomal protein S19 300852  
184 4V4Z 22 AV 30S ribosomal protein S19 300852  
185 4V4I 52 t 30S ribosomal protein S19 262724  
186 4V4P 54 BV 30S ribosomal protein S19 300852  
187 4V4R 22 AS 30S ribosomal protein S19 300852  
188 4V4S 22 AS 30S ribosomal protein S19 300852  
189 4V4T 22 AS 30S ribosomal protein S19 300852  
190 4V49 21 AS 30S ribosomal protein S19 562  
191 4V4A 19 AS 30S ribosomal protein S19 562  
192 4V4G 19 AS, CS, ES, GS, IS 30S ribosomal protein S19 562  
193 4V5N 19 AS 30S RIBOSOMAL PROTEIN S19 300852  
194 4V5M 19 AS 30S RIBOSOMAL PROTEIN S19 300852  
195 4V68 20 AS 30S ribosomal protein S19 274  
196 1ML5 24 V 30S RIBOSOMAL PROTEIN S19 562  
197 1JGO 22 V 30S RIBOSOMAL PROTEIN S19 274  
198 1JGP 22 V 30S RIBOSOMAL PROTEIN S19 274  
199 1JGQ 22 V 30S RIBOSOMAL PROTEIN S19 274  
200 4V42 22 AV 30S RIBOSOMAL PROTEIN S19 274  
201 1QKH 1 A 30S RIBOSOMAL PROTEIN S19 274  
202 1QKF 1 A 30S RIBOSOMAL PROTEIN S19 274  
 
Sequence Clusters for the Sequence Entities in PDB 4JI8
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 197 29
95% 35 198 45
90% 35 198 47
70% 35 198 59
50% 46 282 35
40% 46 282 45
30% 51 333 45
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 199 25
95% 35 199 40
90% 35 199 42
70% 35 199 54
50% 40 276 42
40% 47 332 35
30% 47 332 46
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 17961
95% 35 206 31
90% 35 206 33
70% 40 288 24
50% 40 288 34
40% 40 288 44
30% 40 288 69
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 200 22
95% 35 200 38
90% 35 200 40
70% 35 200 51
50% 40 281 39
40% 40 281 50
30% 45 333 49
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 198 26
95% 35 198 46
90% 35 198 48
70% 35 198 60
50% 35 198 92
40% 35 198 114
30% 35 198 137
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 202 20
95% 37 207 30
90% 37 207 32
70% 37 207 43
50% 45 289 33
40% 45 289 43
30% 45 289 67
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 194 30
95% 35 199 42
90% 35 199 44
70% 35 199 56
50% 35 199 89
40% 35 199 112
30% 40 279 76
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 113 66
95% 35 193 50
90% 35 197 49
70% 35 197 61
50% 35 197 93
40% 35 197 116
30% 35 197 138
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 125 59
95% 32 174 71
90% 32 174 75
70% 32 174 88
50% 32 174 128
40% 32 174 146
30% 32 174 164
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 202 19
95% 36 202 33
90% 36 202 36
70% 36 202 47
50% 41 279 38
40% 41 279 49
30% 41 279 73
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 199 23
95% 35 200 35
90% 35 200 38
70% 35 200 48
50% 35 200 88
40% 40 276 53
30% 40 276 75
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 149 54
95% 35 198 44
90% 35 198 46
70% 35 198 58
50% 35 198 91
40% 35 198 113
30% 35 198 136
Entity #21: Chains: U - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 189 32
95% 35 189 52
90% 35 189 55
70% 35 189 67
50% 35 189 111
40% 35 189 134
30% 35 189 153
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 173 48
95% 32 173 72
90% 32 173 76
70% 32 173 90
50% 33 214 76
40% 33 214 102
30% 33 214 122
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 192 31
95% 35 200 36
90% 35 200 39
70% 35 200 49
50% 40 276 40
40% 40 277 51
30% 40 277 74
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 199 24
95% 35 199 39
90% 35 199 41
70% 35 199 52
50% 41 280 37
40% 41 280 48
30% 41 282 72
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 204 17
95% 42 210 29
90% 42 210 31
70% 42 210 42
50% 42 210 82
40% 42 210 107
30% 48 248 87
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 203 18
95% 36 204 32
90% 36 204 34
70% 36 204 44
50% 41 246 53
40% 41 247 70
30% 41 247 94
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 199 21
95% 36 199 37
90% 36 203 35
70% 36 203 45
50% 43 282 36
40% 44 284 46
30% 50 337 44
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 109 86
95% 35 199 41
90% 35 199 43
70% 35 199 55
50% 40 276 41
40% 40 276 54
30% 45 328 50
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.