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Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Sequence Clustering and Redundancy Reduction Results
4JI8
Cluster # 71 Members. Sequence cutoff: 95% Cluster size: 174 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4Y4O 49 1r, 2r 30S ribosomal protein S18 300852  
2 4W2F 18 AR, CR 30S Ribosomal Protein S18 300852  
3 4Y4P 49 1r, 2r 30S ribosomal protein S18 300852  
4 4W2G 18 AR, CR 30S Ribosomal Protein S18 300852  
5 4LFB 18 R ribosomal protein S18 300852  
6 1VY4 18 AR, CR 30S ribosomal protein S18 300852  
7 4W2I 18 AR, CR 30S Ribosomal Protein S18 300852  
8 1VY5 18 AR, CR 30S ribosomal protein S18 300852  
9 4WQF 51 BR, DR 30S ribosomal protein S18 300852  
10 4W2H 18 AR, CR 30S Ribosomal Protein S18 300852  
11 4WPO 51 BR, DR 30S ribosomal protein S18 300852  
12 4V8I 18 AR, CR 30S Ribosomal Protein S18 274  
13 4JI1 18 R RIBOSOMAL PROTEIN S18 300852  
14 4DR6 18 R 30S ribosomal protein S18 300852  
15 4LF7 18 R ribosomal protein S18 300852  
16 4LF8 18 R ribosomal protein S18 300852  
17 4WQU 51 BR, DR 30S ribosomal protein S18 300852  
18 2VQE 18 R 30S RIBOSOMAL PROTEIN S18 300852  
19 2UUB 18 R 30S RIBOSOMAL PROTEIN S18 300852  
20 4DV6 18 R ribosomal protein S18 300852  
21 4DR5 18 R 30S ribosomal protein S18 300852  
22 4DR2 18 R 30S ribosomal protein S18 300852  
23 4LF9 18 R ribosomal protein S18 300852  
24 4WQY 51 BR, DR 30S ribosomal protein S18 300852  
25 4DUY 18 R ribosomal protein S18 300852  
26 4DV7 18 R ribosomal protein S18 300852  
27 4V8D 18 AU, CU 30S RIBOSOMAL PROTEIN S18 300852  
28 4DR3 18 R 30S ribosomal protein S18 300852  
29 4V90 18 AR 30S RIBOSOMAL PROTEIN S18 300852  
30 4JI3 18 R RIBOSOMAL PROTEIN S18 300852  
31 4JI6 18 R RIBOSOMAL PROTEIN S18 300852  
32 4JI8 18 R RIBOSOMAL PROTEIN S18 300852  
33 2UXC 18 R RIBOSOMAL PROTEIN S18 300852  
34 4V9R 18 AR, CR 30S Ribosomal Protein S18 274  
35 4B3M 18 R 30S RIBOSOMAL PROTEIN S18 300852  
36 4LF4 18 R ribosomal protein S18 300852  
37 4LF6 18 R ribosomal protein S18 300852  
38 4JI7 18 R RIBOSOMAL PROTEIN S18 300852  
39 4B3T 18 R 30S RIBOSOMAL PROTEIN S18 300852  
40 4V8B 18 AU, CU 30S RIBOSOMAL PROTEIN S18 300852  
41 2VQF 18 R 30S RIBOSOMAL PROTEIN S18 300852  
42 2UUA 18 R 30S RIBOSOMAL PROTEIN S18 300852  
43 4V87 48 BU, CU 30S RIBOSOMAL PROTEIN S18 300852  
44 4V95 18 AR, CR 30S Ribosomal Protein S18 274  
45 1VY7 18 AR, CR 30S ribosomal protein S18 300852  
46 4B3R 18 R 30S RIBOSOMAL PROTEIN S18 300852  
47 4LNT 18 QR, XR 30S ribosomal protein S18 300852  
48 1G1X 5 C, H 30S RIBOSOMAL PROTEIN S18 274  
49 4DR1 18 R 30S ribosomal protein S18 300852  
50 4LFA 18 R ribosomal protein S18 300852  
51 4DV4 18 R ribosomal protein S18 300852  
52 4JI0 18 R ribosomal protein S18 300852  
53 4V9S 18 AR, CR 30S Ribosomal Protein S18 274  
54 4JI2 18 R RIBOSOMAL PROTEIN S18 300852  
55 4DR7 18 R 30S ribosomal protein S18 300852  
56 1J5E 18 R 30S RIBOSOMAL PROTEIN S18 274  
57 4DUZ 18 R ribosomal protein S18 300852  
58 4V8G 18 AR, CR 30S Ribosomal Protein S18 300852  
59 4DV3 18 R ribosomal protein S18 300852  
60 4DV5 18 R ribosomal protein S18 300852  
61 2UUC 18 R 30S RIBOSOMAL PROTEIN S18 300852  
62 4LFC 18 R ribosomal protein S18 300852  
63 1FJG 19 R 30S RIBOSOMAL PROTEIN S18 274  
64 3T1Y 18 R 30S ribosomal protein S18 274  
65 4JI4 18 R RIBOSOMAL PROTEIN S18 300852  
66 1VY6 18 AR, CR 30S ribosomal protein S18 300852  
67 1XMQ 20 R 30S Ribosomal Protein S18 274  
68 4DV0 18 R ribosomal protein S18 300852  
69 4V9B 18 AU, CU 30S RIBOSOMAL PROTEIN S18 300852  
70 4V6F 48 BU, CU 30S ribosomal protein S18 300852  
71 4V8F 48 BU, CU 30S RIBOSOMAL PROTEIN S18 300852  
72 4B3S 18 R 30S RIBOSOMAL PROTEIN S18 300852  
73 4DV2 18 R ribosomal protein S18 300852  
74 4DV1 18 R ribosomal protein S18 300852  
75 1N32 20 R 30S RIBOSOMAL PROTEIN S18 274  
76 1I94 18 R 30S RIBOSOMAL PROTEIN S18 274  
77 4V8H 18 AR, CR 30S Ribosomal Protein S18 300852  
78 4JI5 18 R RIBOSOMAL PROTEIN S18 300852  
79 4W2E 51 r 30S ribosomal protein S18 300852  
80 4V8C 48 CU, DU 30S RIBOSOMAL PROTEIN S18 300852  
81 4LF5 18 R ribosomal protein S18 300852  
82 4V9A 18 AU, CU 30S RIBOSOMAL PROTEIN S18 300852  
83 4V5J 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
84 4V7Y 18 AR, CR 30S ribosomal protein S18 300852  
85 4V8E 48 BU, DU 30S RIBOSOMAL PROTEIN S18 300852  
86 4DR4 18 R 30S ribosomal protein S18 300852  
87 3OTO 18 R 30S RIBOSOMAL PROTEIN S18 300852  
88 2UU9 18 R 30S RIBOSOMAL PROTEIN S18 300852  
89 4V8Q 52 BR 30S RIBOSOMAL PROTEIN S18 300852  
90 1HR0 19 R 30S RIBOSOMAL PROTEIN S18 274  
91 4AQY 18 R 30S RIBOSOMAL PROTEIN S18 274  
92 4NXM 18 R ribosomal protein S18 300852  
93 4V5L 18 AR 30S RIBOSOMAL PROTEIN S18 300852  
94 4V7X 18 AR, CR 30S ribosomal protein S18 300852  
95 1IBL 21 R 30S RIBOSOMAL PROTEIN S18 274  
96 4V7W 18 AR, CR 30S ribosomal protein S18 300852  
97 4NXN 18 R ribosomal protein S18 300852  
98 1XNR 20 R 16S Ribosomal protein S18 274  
99 4LT8 18 QR, XR 30S ribosomal protein S18 300852  
100 4V51 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
101 4V7L 18 AR, CR 30S ribosomal protein S18 300852  
102 4V5R 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
103 1HNZ 19 R 30S RIBOSOMAL PROTEIN S18 274  
104 1XNQ 20 R Ribosomal protein S18 274  
105 4V8A 48 CR, DR 30S ribosomal protein S18 300852  
106 4V5K 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
107 4V5Q 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
108 4V7J 17 Ar, Br 30S ribosomal protein S18 300852  
109 4V5C 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
110 4V5E 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
111 4L47 18 QR, XR 30S ribosomal protein S18 300852  
112 4V5P 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
113 4V5D 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
114 4V7Z 18 AR, CR 30S ribosomal protein S18 300852  
115 4V8X 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
116 4V5S 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
117 1XMO 20 R 30S ribosomal protein S18 274  
118 3T1H 18 R 30S ribosomal protein S18 274  
119 2UXD 18 R RIBOSOMAL PROTEIN S18 300852  
120 1N33 20 R 30S RIBOSOMAL PROTEIN S18 274  
121 1IBK 19 R 30S RIBOSOMAL PROTEIN S18 274  
122 4V6G 18 AU, CU 30S RIBOSOMAL PROTEIN S18 300852  
123 4V8N 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
124 4V97 18 AR, CR 30S ribosomal protein S18 300852  
125 1HNW 19 R 30S RIBOSOMAL PROTEIN S18 274  
126 4V7M 18 AR, CR 30S ribosomal protein S18 300852  
127 1IBM 21 R 30S RIBOSOMAL PROTEIN S18 274  
128 4V6A 18 AR, CR 30S ribosomal protein S18 300852  
129 4V7K 17 Ar, Br 30S ribosomal protein S18 300852  
130 1HNX 19 R 30S RIBOSOMAL PROTEIN S18 274  
131 4P70 18 QR, XR 30S ribosomal protein S18 300852  
132 4V8U 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
133 4LSK 18 QR, XR 30S ribosomal protein S18 300852  
134 4P6F 18 QR, XR 30S ribosomal protein S18 300852  
135 4V67 20 AR, CR 30S ribosomal protein S18 274  
136 4V5F 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
137 1VVJ 18 QR, XR 30S ribosomal protein S18 300852  
138 4LFZ 18 QR, XR 30S ribosomal protein S18 300852  
139 2E5L 19 R 30S ribosomal protein S18 274  
140 2HHH 18 R 30S ribosomal protein S18 300852  
141 4OX9 18 R 30S ribosomal protein S18 300852  
142 2UXB 18 R RIBOSOMAL PROTEIN S18 300852  
143 1I96 18 R 30S RIBOSOMAL PROTEIN S18 274  
144 1N34 19 R 30S RIBOSOMAL PROTEIN S18 274  
145 4V5A 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
146 4V63 20 AR, CR 30S ribosomal protein S18 262724  
147 4L71 18 QR, XR 30S ribosomal protein S18 300852  
148 4KVB 17 R 30S ribosomal protein S18 262724  
149 4V8J 18 AR, CR 30S ribosomal protein S18 300852  
150 1N36 18 R 30S RIBOSOMAL PROTEIN S18 274  
151 2ZM6 18 R 30S ribosomal protein S18 274  
152 4LEL 18 QR, XR 30S ribosomal protein S18 300852  
153 2F4V 19 R 30S ribosomal protein S18 274  
154 1FKA 18 R 30S RIBOSOMAL PROTEIN S18 274  
155 4V5G 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
156 1I97 18 R 30S RIBOSOMAL PROTEIN S18 274  
157 1I95 18 R 30S RIBOSOMAL PROTEIN S18 274  
158 4V8O 18 AR 30S RIBOSOMAL PROTEIN S18 300852  
159 4V4Y 20 AU 30S ribosomal protein S18 300852  
160 4V4J 51 s 30S ribosomal protein S18 262724  
161 4V4X 20 AU 30S ribosomal protein S18 300852  
162 4V4Z 21 AU 30S ribosomal protein S18 300852  
163 4V4I 51 s 30S ribosomal protein S18 262724  
164 4V4P 53 BU 30S ribosomal protein S18 300852  
165 4V4R 21 AR 30S ribosomal protein S18 300852  
166 4V4S 21 AR 30S ribosomal protein S18 300852  
167 4V4T 21 AR 30S ribosomal protein S18 300852  
168 4V5N 18 AR 30S RIBOSOMAL PROTEIN S18 300852  
169 4V5M 18 AR 30S RIBOSOMAL PROTEIN S18 300852  
170 1ML5 23 U 30S RIBOSOMAL PROTEIN S18 562  
171 1JGO 21 U 30S RIBOSOMAL PROTEIN S18 274  
172 1JGP 21 U 30S RIBOSOMAL PROTEIN S18 274  
173 1JGQ 21 U 30S RIBOSOMAL PROTEIN S18 274  
174 4V42 21 AU 30S RIBOSOMAL PROTEIN S18 274  
 
Sequence Clusters for the Sequence Entities in PDB 4JI8
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 197 29
95% 35 198 45
90% 35 198 47
70% 35 198 60
50% 46 283 35
40% 46 283 45
30% 51 334 46
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 199 26
95% 35 199 40
90% 35 199 42
70% 35 199 54
50% 40 277 41
40% 47 335 35
30% 47 336 45
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 18004
95% 35 206 31
90% 35 206 33
70% 40 288 24
50% 40 289 34
40% 40 289 44
30% 40 289 69
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 200 23
95% 35 200 38
90% 35 200 40
70% 35 200 51
50% 40 282 39
40% 40 282 50
30% 45 335 49
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 198 27
95% 35 198 46
90% 35 198 48
70% 35 199 57
50% 35 199 90
40% 35 199 113
30% 35 199 137
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 202 21
95% 37 207 30
90% 37 207 32
70% 37 207 43
50% 45 290 33
40% 45 291 43
30% 45 291 67
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 194 30
95% 35 199 42
90% 35 199 44
70% 35 199 56
50% 35 199 89
40% 35 200 112
30% 40 280 76
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 113 66
95% 35 193 50
90% 35 197 49
70% 35 197 61
50% 35 197 93
40% 35 197 116
30% 35 197 139
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 125 59
95% 32 174 71
90% 32 174 75
70% 32 174 89
50% 32 174 130
40% 32 174 148
30% 32 174 164
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 202 20
95% 36 202 33
90% 36 202 36
70% 36 202 47
50% 41 280 38
40% 41 280 49
30% 41 280 73
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 199 24
95% 35 200 35
90% 35 200 38
70% 35 200 48
50% 40 276 43
40% 40 277 52
30% 40 277 75
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 149 54
95% 35 198 44
90% 35 198 46
70% 35 198 59
50% 35 198 92
40% 35 198 114
30% 35 198 138
Entity #21: Chains: U - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 189 32
95% 35 189 52
90% 35 189 55
70% 35 189 67
50% 35 189 112
40% 35 189 135
30% 35 189 153
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 173 48
95% 32 173 72
90% 32 173 76
70% 32 173 91
50% 33 214 77
40% 33 214 102
30% 33 214 123
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 192 31
95% 35 200 36
90% 35 200 39
70% 35 200 49
50% 40 277 40
40% 40 278 51
30% 40 278 74
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 199 25
95% 35 199 39
90% 35 199 41
70% 35 199 52
50% 41 281 37
40% 41 281 48
30% 41 283 72
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 204 18
95% 42 210 29
90% 42 210 31
70% 42 210 42
50% 42 210 83
40% 42 210 107
30% 48 249 87
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 203 19
95% 36 204 32
90% 36 204 34
70% 36 204 44
50% 41 247 55
40% 41 248 70
30% 41 248 94
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 199 22
95% 36 199 37
90% 36 203 35
70% 36 203 45
50% 43 283 36
40% 44 285 46
30% 50 339 44
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 109 86
95% 35 199 41
90% 35 199 43
70% 35 199 55
50% 40 277 42
40% 40 277 54
30% 45 330 50
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.