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Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Sequence Clustering and Redundancy Reduction Results
4JI8
Cluster # 64 Members. Sequence cutoff: 95% Cluster size: 194 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4Y4O 49 1r, 2r 30S ribosomal protein S18 300852  
2 4W2F 18 AR, CR 30S Ribosomal Protein S18 300852  
3 4Y4P 49 1r, 2r 30S ribosomal protein S18 300852  
4 4W2G 18 AR, CR 30S Ribosomal Protein S18 300852  
5 4LFB 18 R ribosomal protein S18 300852  
6 1VY4 18 AR, CR 30S ribosomal protein S18 300852  
7 4W2I 18 AR, CR 30S Ribosomal Protein S18 300852  
8 1VY5 18 AR, CR 30S ribosomal protein S18 300852  
9 4WQF 51 BR, DR 30S ribosomal protein S18 300852  
10 4W2H 18 AR, CR 30S Ribosomal Protein S18 300852  
11 4WPO 51 BR, DR 30S ribosomal protein S18 300852  
12 4V8I 18 AR, CR 30S Ribosomal Protein S18 274  
13 4JI1 18 R RIBOSOMAL PROTEIN S18 300852  
14 4Z3S 49 1r, 2r 30S ribosomal protein S18 300852  
15 4Z3Q 49 1r, 2r 30S Ribosomal Protein S18 300852  
16 4DR6 18 R 30S ribosomal protein S18 300852  
17 4LF7 18 R ribosomal protein S18 300852  
18 4LF8 18 R ribosomal protein S18 300852  
19 4WSD 18 9A, 9I 30S ribosomal protein S18 300852  
20 4WQU 51 BR, DR 30S ribosomal protein S18 300852  
21 2VQE 18 R 30S RIBOSOMAL PROTEIN S18 300852  
22 4Z8C 49 1r, 2r 30S ribosomal protein S18 300852  
23 2UUB 18 R 30S RIBOSOMAL PROTEIN S18 300852  
24 4DV6 18 R ribosomal protein S18 300852  
25 4DR5 18 R 30S ribosomal protein S18 300852  
26 4DR2 18 R 30S ribosomal protein S18 300852  
27 4WRO 22 9I 30S ribosomal protein S18 300852  
28 4WQ1 18 9A, 9I 30S ribosomal protein S18 300852  
29 4LF9 18 R ribosomal protein S18 300852  
30 4WQY 51 BR, DR 30S ribosomal protein S18 300852  
31 4DUY 18 R ribosomal protein S18 300852  
32 4DV7 18 R ribosomal protein S18 300852  
33 4WRA 18 9A, 9I 30S ribosomal protein S18 300852  
34 4V8D 18 AU, CU 30S RIBOSOMAL PROTEIN S18 300852  
35 4DR3 18 R 30S ribosomal protein S18 300852  
36 4V90 18 AR 30S RIBOSOMAL PROTEIN S18 300852  
37 4JI3 18 R RIBOSOMAL PROTEIN S18 300852  
38 4WQR 18 9A, 9I 30S ribosomal protein S18 300852  
39 4JI6 18 R RIBOSOMAL PROTEIN S18 300852  
40 4JI8 18 R RIBOSOMAL PROTEIN S18 300852  
41 2UXC 18 R RIBOSOMAL PROTEIN S18 300852  
42 4V9R 18 AR, CR 30S Ribosomal Protein S18 274  
43 4B3M 18 R 30S RIBOSOMAL PROTEIN S18 300852  
44 4LF4 18 R ribosomal protein S18 300852  
45 4LF6 18 R ribosomal protein S18 300852  
46 4JI7 18 R RIBOSOMAL PROTEIN S18 300852  
47 4WU1 18 9A, 9I 30S ribosomal protein S18 300852  
48 4B3T 18 R 30S RIBOSOMAL PROTEIN S18 300852  
49 4WR6 18 9A, 9I 30S ribosomal protein S18 300852  
50 4V8B 18 AU, CU 30S RIBOSOMAL PROTEIN S18 300852  
51 2VQF 18 R 30S RIBOSOMAL PROTEIN S18 300852  
52 2UUA 18 R 30S RIBOSOMAL PROTEIN S18 300852  
53 4V87 48 BU, CU 30S RIBOSOMAL PROTEIN S18 300852  
54 4V95 18 AR, CR 30S Ribosomal Protein S18 274  
55 1VY7 18 AR, CR 30S ribosomal protein S18 300852  
56 4B3R 18 R 30S RIBOSOMAL PROTEIN S18 300852  
57 4LNT 18 QR, XR 30S ribosomal protein S18 300852  
58 1G1X 5 C, H 30S RIBOSOMAL PROTEIN S18 274  
59 4DR1 18 R 30S ribosomal protein S18 300852  
60 4LFA 18 R ribosomal protein S18 300852  
61 4DV4 18 R ribosomal protein S18 300852  
62 4JI0 18 R ribosomal protein S18 300852  
63 4V9S 18 AR, CR 30S Ribosomal Protein S18 274  
64 4JI2 18 R RIBOSOMAL PROTEIN S18 300852  
65 4DR7 18 R 30S ribosomal protein S18 300852  
66 1J5E 18 R 30S RIBOSOMAL PROTEIN S18 274  
67 4DUZ 18 R ribosomal protein S18 300852  
68 4V8G 18 AR, CR 30S Ribosomal Protein S18 300852  
69 4DV3 18 R ribosomal protein S18 300852  
70 4DV5 18 R ribosomal protein S18 300852  
71 2UUC 18 R 30S RIBOSOMAL PROTEIN S18 300852  
72 4LFC 18 R ribosomal protein S18 300852  
73 1FJG 19 R 30S RIBOSOMAL PROTEIN S18 274  
74 3T1Y 18 R 30S ribosomal protein S18 274  
75 4WZO 18 9A, 9I 30S ribosomal protein S18 300852  
76 4JI4 18 R RIBOSOMAL PROTEIN S18 300852  
77 1VY6 18 AR, CR 30S ribosomal protein S18 300852  
78 1XMQ 20 R 30S Ribosomal Protein S18 274  
79 4DV0 18 R ribosomal protein S18 300852  
80 4V9B 18 AU, CU 30S RIBOSOMAL PROTEIN S18 300852  
81 4V6F 48 BU, CU 30S ribosomal protein S18 300852  
82 4V8F 48 BU, CU 30S RIBOSOMAL PROTEIN S18 300852  
83 4B3S 18 R 30S RIBOSOMAL PROTEIN S18 300852  
84 4DV2 18 R ribosomal protein S18 300852  
85 4DV1 18 R ribosomal protein S18 300852  
86 1N32 20 R 30S RIBOSOMAL PROTEIN S18 274  
87 1I94 18 R 30S RIBOSOMAL PROTEIN S18 274  
88 4V8H 18 AR, CR 30S Ribosomal Protein S18 300852  
89 4JI5 18 R RIBOSOMAL PROTEIN S18 300852  
90 4W2E 51 r 30S ribosomal protein S18 300852  
91 4V8C 48 CU, DU 30S RIBOSOMAL PROTEIN S18 300852  
92 4LF5 18 R ribosomal protein S18 300852  
93 4V9A 18 AU, CU 30S RIBOSOMAL PROTEIN S18 300852  
94 4V5J 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
95 4V7Y 18 AR, CR 30S ribosomal protein S18 300852  
96 4V8E 48 BU, DU 30S RIBOSOMAL PROTEIN S18 300852  
97 4DR4 18 R 30S ribosomal protein S18 300852  
98 4WZD 18 9A, 9I 30S ribosomal protein S18 300852  
99 3OTO 18 R 30S RIBOSOMAL PROTEIN S18 300852  
100 2UU9 18 R 30S RIBOSOMAL PROTEIN S18 300852  
101 4V8Q 52 BR 30S RIBOSOMAL PROTEIN S18 300852  
102 1HR0 19 R 30S RIBOSOMAL PROTEIN S18 274  
103 4AQY 18 R 30S RIBOSOMAL PROTEIN S18 274  
104 4NXM 18 R ribosomal protein S18 300852  
105 4V5L 18 AR 30S RIBOSOMAL PROTEIN S18 300852  
106 4V7X 18 AR, CR 30S ribosomal protein S18 300852  
107 1IBL 21 R 30S RIBOSOMAL PROTEIN S18 274  
108 4V7W 18 AR, CR 30S ribosomal protein S18 300852  
109 4WT1 18 9A, 9I 30S ribosomal protein S18 300852  
110 4Z3R 49 1r, 2r 30S ribosomal protein S18 300852  
111 4NXN 18 R ribosomal protein S18 300852  
112 1XNR 20 R 16S Ribosomal protein S18 274  
113 4LT8 18 QR, XR 30S ribosomal protein S18 300852  
114 4V51 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
115 4V7L 18 AR, CR 30S ribosomal protein S18 300852  
116 4V5R 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
117 1HNZ 19 R 30S RIBOSOMAL PROTEIN S18 274  
118 1XNQ 20 R Ribosomal protein S18 274  
119 4V8A 48 CR, DR 30S ribosomal protein S18 300852  
120 4V5K 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
121 4V5Q 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
122 4V7J 17 Ar, Br 30S ribosomal protein S18 300852  
123 4V5C 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
124 4V5E 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
125 4L47 18 QR, XR 30S ribosomal protein S18 300852  
126 4V5P 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
127 4V5D 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
128 4V7Z 18 AR, CR 30S ribosomal protein S18 300852  
129 4V8X 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
130 4V5S 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
131 1XMO 20 R 30S ribosomal protein S18 274  
132 3T1H 18 R 30S ribosomal protein S18 274  
133 2UXD 18 R RIBOSOMAL PROTEIN S18 300852  
134 1N33 20 R 30S RIBOSOMAL PROTEIN S18 274  
135 1IBK 19 R 30S RIBOSOMAL PROTEIN S18 274  
136 4V6G 18 AU, CU 30S RIBOSOMAL PROTEIN S18 300852  
137 4V8N 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
138 4V97 18 AR, CR 30S ribosomal protein S18 300852  
139 1HNW 19 R 30S RIBOSOMAL PROTEIN S18 274  
140 4V7M 18 AR, CR 30S ribosomal protein S18 300852  
141 4WSM 18 9A, 9I 30S ribosomal protein S18 300852  
142 4TUD 18 QR, XR 30S ribosomal protein S18 300852  
143 1IBM 21 R 30S RIBOSOMAL PROTEIN S18 274  
144 4V6A 18 AR, CR 30S ribosomal protein S18 300852  
145 4TUE 18 QR, XR 30S ribosomal protein S18 300852  
146 4TUA 18 QR, XR 30S ribosomal protein S18 300852  
147 4V7K 17 Ar, Br 30S ribosomal protein S18 300852  
148 1HNX 19 R 30S RIBOSOMAL PROTEIN S18 274  
149 4TUC 18 QR, XR 30S ribosomal protein S18 300852  
150 4TUB 18 QR, XR 30S ribosomal protein S18 300852  
151 4P70 18 QR, XR 30S ribosomal protein S18 300852  
152 4V8U 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
153 4LSK 18 QR, XR 30S ribosomal protein S18 300852  
154 4P6F 18 QR, XR 30S ribosomal protein S18 300852  
155 4V67 20 AR, CR 30S ribosomal protein S18 274  
156 4V5F 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
157 1VVJ 18 QR, XR 30S ribosomal protein S18 300852  
158 4LFZ 18 QR, XR 30S ribosomal protein S18 300852  
159 2E5L 19 R 30S ribosomal protein S18 274  
160 2HHH 18 R 30S ribosomal protein S18 300852  
161 4OX9 18 R 30S ribosomal protein S18 300852  
162 2UXB 18 R RIBOSOMAL PROTEIN S18 300852  
163 1I96 18 R 30S RIBOSOMAL PROTEIN S18 274  
164 1N34 19 R 30S RIBOSOMAL PROTEIN S18 274  
165 4V5A 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
166 4V63 20 AR, CR 30S ribosomal protein S18 262724  
167 4L71 18 QR, XR 30S ribosomal protein S18 300852  
168 4KVB 17 R 30S ribosomal protein S18 262724  
169 4V8J 18 AR, CR 30S ribosomal protein S18 300852  
170 1N36 18 R 30S RIBOSOMAL PROTEIN S18 274  
171 2ZM6 18 R 30S ribosomal protein S18 274  
172 4LEL 18 QR, XR 30S ribosomal protein S18 300852  
173 2F4V 19 R 30S ribosomal protein S18 274  
174 1FKA 18 R 30S RIBOSOMAL PROTEIN S18 274  
175 4V5G 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
176 1I97 18 R 30S RIBOSOMAL PROTEIN S18 274  
177 1I95 18 R 30S RIBOSOMAL PROTEIN S18 274  
178 4V8O 18 AR 30S RIBOSOMAL PROTEIN S18 300852  
179 4V4Y 20 AU 30S ribosomal protein S18 300852  
180 4V4J 51 s 30S ribosomal protein S18 262724  
181 4V4X 20 AU 30S ribosomal protein S18 300852  
182 4V4Z 21 AU 30S ribosomal protein S18 300852  
183 4V4I 51 s 30S ribosomal protein S18 262724  
184 4V4P 53 BU 30S ribosomal protein S18 300852  
185 4V4R 21 AR 30S ribosomal protein S18 300852  
186 4V4S 21 AR 30S ribosomal protein S18 300852  
187 4V4T 21 AR 30S ribosomal protein S18 300852  
188 4V5N 18 AR 30S RIBOSOMAL PROTEIN S18 300852  
189 4V5M 18 AR 30S RIBOSOMAL PROTEIN S18 300852  
190 1ML5 23 U 30S RIBOSOMAL PROTEIN S18 562  
191 1JGO 21 U 30S RIBOSOMAL PROTEIN S18 274  
192 1JGP 21 U 30S RIBOSOMAL PROTEIN S18 274  
193 1JGQ 21 U 30S RIBOSOMAL PROTEIN S18 274  
194 4V42 21 AU 30S RIBOSOMAL PROTEIN S18 274  
 
Sequence Clusters for the Sequence Entities in PDB 4JI8
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 217 36
95% 43 218 51
90% 43 218 55
70% 43 218 66
50% 55 306 31
40% 55 306 42
30% 60 368 40
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 219 34
95% 43 219 47
90% 43 219 51
70% 43 219 61
50% 49 300 42
40% 56 369 30
30% 56 370 38
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 18680
95% 43 226 39
90% 43 226 43
70% 49 311 22
50% 49 312 30
40% 49 312 41
30% 49 312 57
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 220 32
95% 43 220 45
90% 43 220 49
70% 43 220 59
50% 49 305 39
40% 49 305 50
30% 54 369 44
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 218 35
95% 43 218 52
90% 43 218 56
70% 43 219 64
50% 43 219 92
40% 43 219 114
30% 43 219 128
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 222 29
95% 45 227 36
90% 45 227 40
70% 45 227 52
50% 54 313 29
40% 54 314 39
30% 54 314 54
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 214 37
95% 43 219 49
90% 43 219 53
70% 43 219 63
50% 43 219 91
40% 43 220 113
30% 49 303 70
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 133 59
95% 43 213 56
90% 43 217 58
70% 43 217 69
50% 43 217 94
40% 43 217 116
30% 43 217 130
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 39 145 55
95% 40 194 64
90% 40 194 67
70% 40 194 79
50% 40 194 113
40% 40 194 131
30% 40 194 150
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 44 222 28
95% 44 222 41
90% 44 222 46
70% 44 222 56
50% 50 303 38
40% 50 303 48
30% 50 303 67
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 219 30
95% 43 220 42
90% 43 220 47
70% 43 220 57
50% 49 299 41
40% 49 300 51
30% 49 300 69
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 42 169 49
95% 43 218 50
90% 43 218 54
70% 43 218 65
50% 43 218 93
40% 43 218 115
30% 43 218 129
Entity #21: Chains: U - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 209 40
95% 43 209 59
90% 43 209 62
70% 43 209 73
50% 43 209 100
40% 43 209 123
30% 43 209 135
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 193 45
95% 40 193 65
90% 40 193 68
70% 40 193 80
50% 42 237 77
40% 42 237 102
30% 42 237 121
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 212 38
95% 43 220 43
90% 43 220 48
70% 43 220 58
50% 49 300 40
40% 49 301 49
30% 49 301 68
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 219 33
95% 43 219 46
90% 43 219 50
70% 43 219 60
50% 50 304 37
40% 50 304 47
30% 50 306 63
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 44 224 25
95% 50 230 24
90% 50 230 29
70% 50 230 41
50% 50 230 83
40% 50 230 108
30% 56 269 80
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 44 223 27
95% 44 224 40
90% 44 224 44
70% 44 224 54
50% 49 267 51
40% 49 268 64
30% 49 268 83
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 44 219 31
95% 44 219 44
90% 44 223 45
70% 44 223 55
50% 52 306 35
40% 53 308 43
30% 59 373 37
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 39 130 75
95% 43 219 48
90% 43 219 52
70% 43 219 62
50% 49 300 43
40% 49 300 52
30% 54 364 46
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.