Sequence Similarity Clusters for the Entities in PDB 4JI8

Entity #1 | Chains: A
16S rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 253 36
95 % 56 254 49
90 % 56 254 54
70 % 56 254 64
50 % 74 361 28
40 % 74 361 38
30 % 79 434 36
Entity #11 | Chains: K
RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 255 34
95 % 56 255 45
90 % 56 255 50
70 % 56 255 59
50 % 68 355 35
40 % 75 436 20
30 % 75 437 34
Entity #12 | Chains: L
RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 20500
95 % 56 262 36
90 % 56 262 41
70 % 68 366 21
50 % 68 367 27
40 % 68 367 37
30 % 68 367 57
Entity #13 | Chains: M
RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 256 32
95 % 56 256 43
90 % 56 256 48
70 % 56 256 57
50 % 68 360 32
40 % 68 360 44
30 % 73 435 39
Entity #14 | Chains: N
RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 254 35
95 % 56 254 50
90 % 56 254 55
70 % 56 255 62
50 % 56 255 87
40 % 56 255 108
30 % 56 255 120
Entity #15 | Chains: O
RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 258 29
95 % 58 263 35
90 % 58 263 40
70 % 58 263 50
50 % 73 368 26
40 % 73 369 36
30 % 73 369 56
Entity #16 | Chains: P
RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 250 37
95 % 56 255 47
90 % 56 255 52
70 % 56 255 61
50 % 56 255 86
40 % 56 256 107
30 % 68 358 62
Entity #17 | Chains: Q
RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 48 162 59
95 % 56 249 52
90 % 56 253 56
70 % 56 253 65
50 % 56 253 89
40 % 56 253 111
30 % 56 253 124
Entity #18 | Chains: R
RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 49 169 57
95 % 50 220 64
90 % 50 220 69
70 % 50 220 79
50 % 50 220 110
40 % 50 220 132
30 % 50 220 142
Entity #19 | Chains: S
RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 258 28
95 % 57 258 38
90 % 57 258 44
70 % 57 258 53
50 % 69 358 31
40 % 69 358 41
30 % 69 358 59
Entity #2 | Chains: B
RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 255 30
95 % 56 256 40
90 % 56 256 46
70 % 56 256 55
50 % 68 354 34
40 % 68 355 45
30 % 68 355 61
Entity #20 | Chains: T
RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 203 48
95 % 56 254 48
90 % 56 254 53
70 % 56 254 63
50 % 56 254 88
40 % 56 254 109
30 % 56 254 121
Entity #21 | Chains: U
RIBOSOMAL PROTEIN THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 245 39
95 % 56 245 55
90 % 56 245 60
70 % 56 245 70
50 % 56 245 94
40 % 56 245 118
30 % 56 245 131
Entity #3 | Chains: C
RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 50 219 45
95 % 50 219 65
90 % 50 219 70
70 % 50 219 80
50 % 52 275 80
40 % 52 275 100
30 % 52 275 112
Entity #4 | Chains: D
RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 248 38
95 % 56 256 41
90 % 56 256 47
70 % 56 256 56
50 % 68 355 33
40 % 68 356 43
30 % 68 356 60
Entity #5 | Chains: E
RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 255 33
95 % 56 255 44
90 % 56 255 49
70 % 56 255 58
50 % 69 359 30
40 % 69 359 40
30 % 69 361 58
Entity #6 | Chains: F
RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 260 25
95 % 63 266 34
90 % 63 266 37
70 % 63 266 46
50 % 63 266 84
40 % 63 266 103
30 % 75 312 79
Entity #7 | Chains: G
RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 259 27
95 % 57 260 37
90 % 57 260 42
70 % 57 260 51
50 % 68 312 54
40 % 68 313 68
30 % 68 313 88
Entity #8 | Chains: H
RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 255 31
95 % 57 255 42
90 % 57 259 43
70 % 57 259 52
50 % 71 361 29
40 % 72 363 39
30 % 78 440 33
Entity #9 | Chains: I
RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 52 164 73
95 % 56 255 46
90 % 56 255 51
70 % 56 255 60
50 % 68 355 36
40 % 68 355 46
30 % 73 431 40

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4Y4O 49 1r, 2r 30S ribosomal protein S18 274
2 5J8B 51 r 30S ribosomal protein S18 274
3 4W2F 18 AR, CR 30S Ribosomal Protein S18 274
4 4Y4P 49 1r, 2r 30S ribosomal protein S18 274
5 5J4B 49 1r, 2r 30S ribosomal protein S18 274
6 4W2G 18 AR, CR 30S Ribosomal Protein S18 274
7 4LFB 18 R ribosomal protein S18 274
8 1VY4 18 AR, CR 30S ribosomal protein S18 274
9 4W2I 18 AR, CR 30S Ribosomal Protein S18 274
10 1VY5 18 AR, CR 30S ribosomal protein S18 274
11 5HCQ 49 1r, 2r 30S ribosomal protein S18 274
12 4WQF 51 BR, DR 30S ribosomal protein S18 274
13 4W2H 18 AR, CR 30S Ribosomal Protein S18 274
14 4WPO 51 BR, DR 30S ribosomal protein S18 274
15 4V8I 18 AR, CR 30S Ribosomal Protein S18 274
16 4JI1 18 R RIBOSOMAL PROTEIN S18 274
17 4Z3S 49 1r, 2r 30S ribosomal protein S18 274
18 5DOY 49 1r, 2r 30S Ribosomal Protein S18 274
19 5HD1 49 1r, 2r 30S ribosomal protein S18 274
20 4DR6 18 R 30S ribosomal protein S18 274
21 4LF7 18 R ribosomal protein S18 274
22 4LF8 18 R ribosomal protein S18 274
23 4WSD 18 9A, 9I 30S ribosomal protein S18 274
24 4WQU 51 BR, DR 30S ribosomal protein S18 274
25 5E81 18 9A, 9I 30S ribosomal protein S18 274
26 2VQE 18 R 30S RIBOSOMAL PROTEIN S18 274
27 4Z8C 49 1r, 2r 30S ribosomal protein S18 274
28 5HCR 49 1r, 2r 30S ribosomal protein S18 274
29 2UUB 18 R 30S RIBOSOMAL PROTEIN S18 274
30 4DV6 18 R ribosomal protein S18 274
31 5IBB 18 9A, 9I 30S ribosomal protein S18 274
32 4DR5 18 R 30S ribosomal protein S18 274
33 5J4C 49 1r, 2r 30S ribosomal protein S18 274
34 4DR2 18 R 30S ribosomal protein S18 274
35 4WRO 22 9I 30S ribosomal protein S18 274
36 4WQ1 18 9A, 9I 30S ribosomal protein S18 274
37 4LF9 18 R ribosomal protein S18 274
38 4WQY 51 BR, DR 30S ribosomal protein S18 274
39 4DUY 18 R ribosomal protein S18 274
40 4DV7 18 R ribosomal protein S18 274
41 4WRA 18 9A, 9I 30S ribosomal protein S18 274
42 5IB7 18 9A, 9I 30S ribosomal protein S18 274
43 5HCP 49 1r, 2r 30S ribosomal protein S18 274
44 4V8D 18 AU, CU 30S RIBOSOMAL PROTEIN S18 274
45 4DR3 18 R 30S ribosomal protein S18 274
46 4V90 18 AR 30S RIBOSOMAL PROTEIN S18 274
47 4JI3 18 R RIBOSOMAL PROTEIN S18 274
48 4WQR 18 9A, 9I 30S ribosomal protein S18 274
49 4JI6 18 R RIBOSOMAL PROTEIN S18 274
50 4JI8 18 R RIBOSOMAL PROTEIN S18 274
51 2UXC 18 R RIBOSOMAL PROTEIN S18 274
52 5IB8 18 9A, 9I 30S ribosomal protein S18 274
53 4V9R 18 AR, CR 30S Ribosomal Protein S18 274
54 4B3M 18 R 30S RIBOSOMAL PROTEIN S18 274
55 5EL6 18 9A, 9I 30S ribosomal protein S18 274
56 5EL7 18 9A, 9I 30S ribosomal protein S18 274
57 4LF4 18 R ribosomal protein S18 274
58 4LF6 18 R ribosomal protein S18 274
59 4JI7 18 R RIBOSOMAL PROTEIN S18 274
60 4WU1 18 9A, 9I 30S ribosomal protein S18 274
61 5EL4 18 9A, 9I 30S ribosomal protein S18 274
62 4B3T 18 R 30S RIBOSOMAL PROTEIN S18 274
63 4WR6 18 9A, 9I 30S ribosomal protein S18 274
64 4V8B 18 AU, CU 30S RIBOSOMAL PROTEIN S18 274
65 5HAU 51 1r, 2r 30S ribosomal protein S18 274
66 2VQF 18 R 30S RIBOSOMAL PROTEIN S18 274
67 2UUA 18 R 30S RIBOSOMAL PROTEIN S18 274
68 4V87 48 BU, CU 30S RIBOSOMAL PROTEIN S18 274
69 4V95 18 AR, CR 30S Ribosomal Protein S18 274
70 1VY7 18 AR, CR 30S ribosomal protein S18 274
71 5E7K 18 9A, 9I 30S ribosomal protein S18 274
72 5EL5 18 9A, 9I 30S ribosomal protein S18 274
73 4B3R 18 R 30S RIBOSOMAL PROTEIN S18 274
74 4LNT 18 QR, XR 30S ribosomal protein S18 274
75 1G1X 5 C, H 30S RIBOSOMAL PROTEIN S18 274
76 4DR1 18 R 30S ribosomal protein S18 274
77 4LFA 18 R ribosomal protein S18 274
78 4DV4 18 R ribosomal protein S18 274
79 4YZV 18 QR, XR 30S ribosomal protein S18 274
80 4JI0 18 R ribosomal protein S18 274
81 4V9S 18 AR, CR 30S Ribosomal Protein S18 274
82 4JI2 18 R RIBOSOMAL PROTEIN S18 274
83 4DR7 18 R 30S ribosomal protein S18 274
84 1J5E 18 R 30S RIBOSOMAL PROTEIN S18 274
85 4DUZ 18 R ribosomal protein S18 274
86 4V8G 18 AR, CR 30S Ribosomal Protein S18 274
87 4DV3 18 R ribosomal protein S18 274
88 4DV5 18 R ribosomal protein S18 274
89 2UUC 18 R 30S RIBOSOMAL PROTEIN S18 274
90 4LFC 18 R ribosomal protein S18 274
91 1FJG 19 R 30S RIBOSOMAL PROTEIN S18 274
92 3T1Y 18 R 30S ribosomal protein S18 274
93 4WZO 18 9A, 9I 30S ribosomal protein S18 274
94 4JI4 18 R RIBOSOMAL PROTEIN S18 274
95 1VY6 18 AR, CR 30S ribosomal protein S18 274
96 1XMQ 20 R 30S Ribosomal Protein S18 274
97 4DV0 18 R ribosomal protein S18 274
98 4V9B 18 AU, CU 30S RIBOSOMAL PROTEIN S18 274
99 4V6F 48 BU, CU 30S ribosomal protein S18 274
100 4V8F 48 BU, CU 30S RIBOSOMAL PROTEIN S18 274
101 4B3S 18 R 30S RIBOSOMAL PROTEIN S18 274
102 4DV2 18 R ribosomal protein S18 274
103 4DV1 18 R ribosomal protein S18 274
104 1N32 20 R 30S RIBOSOMAL PROTEIN S18 274
105 1I94 18 R 30S RIBOSOMAL PROTEIN S18 274
106 4V8H 18 AR, CR 30S Ribosomal Protein S18 274
107 4JI5 18 R RIBOSOMAL PROTEIN S18 274
108 4W2E 51 r 30S ribosomal protein S18 274
109 4V8C 48 CU, DU 30S RIBOSOMAL PROTEIN S18 274
110 5BR8 18 R 30S ribosomal protein S18 274
111 4LF5 18 R ribosomal protein S18 274
112 5J4D 52 AB, FD 30S ribosomal protein S18 274
113 4V9A 18 AU, CU 30S RIBOSOMAL PROTEIN S18 274
114 4V5J 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
115 4V7Y 18 AR, CR 30S ribosomal protein S18 274
116 4V8E 48 BU, DU 30S RIBOSOMAL PROTEIN S18 274
117 4DR4 18 R 30S ribosomal protein S18 274
118 4WZD 18 9A, 9I 30S ribosomal protein S18 274
119 3OTO 18 R 30S RIBOSOMAL PROTEIN S18 274
120 2UU9 18 R 30S RIBOSOMAL PROTEIN S18 274
121 4V8Q 52 BR 30S RIBOSOMAL PROTEIN S18 274
122 1HR0 19 R 30S RIBOSOMAL PROTEIN S18 274
123 4AQY 18 R 30S RIBOSOMAL PROTEIN S18 274
124 4W4G 18 QR, XR 30S ribosomal protein S18 274
125 4NXM 18 R ribosomal protein S18 274
126 4V5L 18 AR 30S RIBOSOMAL PROTEIN S18 274
127 4YPB 18 QR, XR 30S ribosomal protein S18 274
128 4V7X 18 AR, CR 30S ribosomal protein S18 274
129 1IBL 21 R 30S RIBOSOMAL PROTEIN S18 274
130 4V7W 18 AR, CR 30S ribosomal protein S18 274
131 4WT1 18 9A, 9I 30S ribosomal protein S18 274
132 5DOX 49 1r, 2r 30S ribosomal protein S18 274
133 4NXN 18 R ribosomal protein S18 274
134 1XNR 20 R 16S Ribosomal protein S18 274
135 4LT8 18 QR, XR 30S ribosomal protein S18 274
136 4V51 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
137 4V7L 18 AR, CR 30S ribosomal protein S18 274
138 4V5R 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
139 1HNZ 19 R 30S RIBOSOMAL PROTEIN S18 274
140 1XNQ 20 R Ribosomal protein S18 274
141 4V8A 48 CR, DR 30S ribosomal protein S18 274
142 4V5K 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
143 4V5Q 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
144 4V7J 17 Ar, Br 30S ribosomal protein S18 274
145 4V5C 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
146 4V5E 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
147 4L47 18 QR, XR 30S ribosomal protein S18 274
148 4V5P 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
149 4V5D 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
150 4V7Z 18 AR, CR 30S ribosomal protein S18 274
151 4V8X 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
152 4V5S 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
153 1XMO 20 R 30S ribosomal protein S18 274
154 3T1H 18 R 30S ribosomal protein S18 274
155 2UXD 18 R RIBOSOMAL PROTEIN S18 274
156 1N33 20 R 30S RIBOSOMAL PROTEIN S18 274
157 1IBK 19 R 30S RIBOSOMAL PROTEIN S18 274
158 4V6G 18 AU, CU 30S RIBOSOMAL PROTEIN S18 274
159 4V8N 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
160 4V97 18 AR, CR 30S ribosomal protein S18 274
161 1HNW 19 R 30S RIBOSOMAL PROTEIN S18 274
162 4V7M 18 AR, CR 30S ribosomal protein S18 274
163 4WSM 18 9A, 9I 30S ribosomal protein S18 274
164 4TUD 18 QR, XR 30S ribosomal protein S18 274
165 1IBM 21 R 30S RIBOSOMAL PROTEIN S18 274
166 4V6A 18 AR, CR 30S ribosomal protein S18 274
167 4TUE 18 QR, XR 30S ribosomal protein S18 274
168 4TUA 18 QR, XR 30S ribosomal protein S18 274
169 4V7K 17 Ar, Br 30S ribosomal protein S18 274
170 4YY3 18 R 30S ribosomal protein S18 274
171 1HNX 19 R 30S RIBOSOMAL PROTEIN S18 274
172 4TUC 18 QR, XR 30S ribosomal protein S18 274
173 4TUB 18 QR, XR 30S ribosomal protein S18 274
174 4P70 18 QR, XR 30S ribosomal protein S18 274
175 4V8U 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
176 4LSK 18 QR, XR 30S ribosomal protein S18 274
177 4P6F 18 QR, XR 30S ribosomal protein S18 274
178 4V67 20 AR, CR 30S ribosomal protein S18 274
179 4V5F 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
180 1VVJ 18 QR, XR 30S ribosomal protein S18 274
181 4LFZ 18 QR, XR 30S ribosomal protein S18 274
182 2E5L 19 R 30S ribosomal protein S18 274
183 2HHH 18 R 30S ribosomal protein S18 274
184 4OX9 18 R 30S ribosomal protein S18 274
185 2UXB 18 R RIBOSOMAL PROTEIN S18 274
186 1I96 18 R 30S RIBOSOMAL PROTEIN S18 274
187 1N34 19 R 30S RIBOSOMAL PROTEIN S18 274
188 4V5A 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
189 4V63 20 AR, CR 30S ribosomal protein S18 274
190 4L71 18 QR, XR 30S ribosomal protein S18 274
191 4KVB 17 R 30S ribosomal protein S18 274
192 4V8J 18 AR, CR 30S ribosomal protein S18 274
193 1N36 18 R 30S RIBOSOMAL PROTEIN S18 274
194 2ZM6 18 R 30S ribosomal protein S18 274
195 5D8B 45 OC, SA 30S ribosomal protein S18 274
196 4LEL 18 QR, XR 30S ribosomal protein S18 274
197 2F4V 19 R 30S ribosomal protein S18 274
198 1FKA 18 R 30S RIBOSOMAL PROTEIN S18 274
199 4V5G 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
200 1I97 18 R 30S RIBOSOMAL PROTEIN S18 274
201 1I95 18 R 30S RIBOSOMAL PROTEIN S18 274
202 4V8O 18 AR 30S RIBOSOMAL PROTEIN S18 274
203 4V4Y 20 AU 30S ribosomal protein S18 274
204 4V4J 51 s 30S ribosomal protein S18 274
205 4V4X 20 AU 30S ribosomal protein S18 274
206 4V4Z 21 AU 30S ribosomal protein S18 274
207 4V4I 51 s 30S ribosomal protein S18 274
208 4V4P 53 BU 30S ribosomal protein S18 274
209 4V4R 21 AR 30S ribosomal protein S18 274
210 4V4S 21 AR 30S ribosomal protein S18 274
211 4V4T 21 AR 30S ribosomal protein S18 274
212 5IMQ 25 V 30S ribosomal protein S18 274
213 5IMR 18 V 30S ribosomal protein S18 274
214 4V5N 18 AR 30S RIBOSOMAL PROTEIN S18 274
215 4V5M 18 AR 30S RIBOSOMAL PROTEIN S18 274
216 1ML5 23 U 30S RIBOSOMAL PROTEIN S18 562
217 1JGO 21 U 30S RIBOSOMAL PROTEIN S18 274
218 1JGP 21 U 30S RIBOSOMAL PROTEIN S18 274
219 1JGQ 21 U 30S RIBOSOMAL PROTEIN S18 274
220 4V42 21 AU 30S RIBOSOMAL PROTEIN S18 274