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Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Sequence Clustering and Redundancy Reduction Results
4JI8
Cluster # 70 Members. Sequence cutoff: 95% Cluster size: 172 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4W2F 18 AR, CR 30S Ribosomal Protein S18 300852  
2 4W2G 18 AR, CR 30S Ribosomal Protein S18 300852  
3 4LFB 18 R ribosomal protein S18 300852  
4 1VY4 18 AR, CR 30S ribosomal protein S18 300852  
5 4W2I 18 AR, CR 30S Ribosomal Protein S18 300852  
6 1VY5 18 AR, CR 30S ribosomal protein S18 300852  
7 4WQF 51 BR, DR 30S ribosomal protein S18 300852  
8 4W2H 18 AR, CR 30S Ribosomal Protein S18 300852  
9 4WPO 51 BR, DR 30S ribosomal protein S18 300852  
10 4V8I 18 AR, CR 30S Ribosomal Protein S18 274  
11 4JI1 18 R RIBOSOMAL PROTEIN S18 300852  
12 4DR6 18 R 30S ribosomal protein S18 300852  
13 4LF7 18 R ribosomal protein S18 300852  
14 4LF8 18 R ribosomal protein S18 300852  
15 4WQU 51 BR, DR 30S ribosomal protein S18 300852  
16 2VQE 18 R 30S RIBOSOMAL PROTEIN S18 300852  
17 2UUB 18 R 30S RIBOSOMAL PROTEIN S18 300852  
18 4DV6 18 R ribosomal protein S18 300852  
19 4DR5 18 R 30S ribosomal protein S18 300852  
20 4DR2 18 R 30S ribosomal protein S18 300852  
21 4LF9 18 R ribosomal protein S18 300852  
22 4WQY 51 BR, DR 30S ribosomal protein S18 300852  
23 4DUY 18 R ribosomal protein S18 300852  
24 4DV7 18 R ribosomal protein S18 300852  
25 4V8D 18 AU, CU 30S RIBOSOMAL PROTEIN S18 300852  
26 4DR3 18 R 30S ribosomal protein S18 300852  
27 4V90 18 AR 30S RIBOSOMAL PROTEIN S18 300852  
28 4JI3 18 R RIBOSOMAL PROTEIN S18 300852  
29 4JI6 18 R RIBOSOMAL PROTEIN S18 300852  
30 4JI8 18 R RIBOSOMAL PROTEIN S18 300852  
31 2UXC 18 R RIBOSOMAL PROTEIN S18 300852  
32 4V9R 18 AR, CR 30S Ribosomal Protein S18 274  
33 4B3M 18 R 30S RIBOSOMAL PROTEIN S18 300852  
34 4LF4 18 R ribosomal protein S18 300852  
35 4LF6 18 R ribosomal protein S18 300852  
36 4JI7 18 R RIBOSOMAL PROTEIN S18 300852  
37 4B3T 18 R 30S RIBOSOMAL PROTEIN S18 300852  
38 4V8B 18 AU, CU 30S RIBOSOMAL PROTEIN S18 300852  
39 2VQF 18 R 30S RIBOSOMAL PROTEIN S18 300852  
40 2UUA 18 R 30S RIBOSOMAL PROTEIN S18 300852  
41 4V87 48 BU, CU 30S RIBOSOMAL PROTEIN S18 300852  
42 4V95 18 AR, CR 30S Ribosomal Protein S18 274  
43 1VY7 18 AR, CR 30S ribosomal protein S18 300852  
44 4B3R 18 R 30S RIBOSOMAL PROTEIN S18 300852  
45 4LNT 18 QR, XR 30S ribosomal protein S18 300852  
46 1G1X 5 C, H 30S RIBOSOMAL PROTEIN S18 274  
47 4DR1 18 R 30S ribosomal protein S18 300852  
48 4LFA 18 R ribosomal protein S18 300852  
49 4DV4 18 R ribosomal protein S18 300852  
50 4JI0 18 R ribosomal protein S18 300852  
51 4V9S 18 AR, CR 30S Ribosomal Protein S18 274  
52 4JI2 18 R RIBOSOMAL PROTEIN S18 300852  
53 4DR7 18 R 30S ribosomal protein S18 300852  
54 1J5E 18 R 30S RIBOSOMAL PROTEIN S18 274  
55 4DUZ 18 R ribosomal protein S18 300852  
56 4V8G 18 AR, CR 30S Ribosomal Protein S18 300852  
57 4DV3 18 R ribosomal protein S18 300852  
58 4DV5 18 R ribosomal protein S18 300852  
59 2UUC 18 R 30S RIBOSOMAL PROTEIN S18 300852  
60 4LFC 18 R ribosomal protein S18 300852  
61 1FJG 19 R 30S RIBOSOMAL PROTEIN S18 274  
62 3T1Y 18 R 30S ribosomal protein S18 274  
63 4JI4 18 R RIBOSOMAL PROTEIN S18 300852  
64 1VY6 18 AR, CR 30S ribosomal protein S18 300852  
65 1XMQ 20 R 30S Ribosomal Protein S18 274  
66 4DV0 18 R ribosomal protein S18 300852  
67 4V9B 18 AU, CU 30S RIBOSOMAL PROTEIN S18 300852  
68 4V6F 48 BU, CU 30S ribosomal protein S18 300852  
69 4V8F 48 BU, CU 30S RIBOSOMAL PROTEIN S18 300852  
70 4B3S 18 R 30S RIBOSOMAL PROTEIN S18 300852  
71 4DV2 18 R ribosomal protein S18 300852  
72 4DV1 18 R ribosomal protein S18 300852  
73 1N32 20 R 30S RIBOSOMAL PROTEIN S18 274  
74 1I94 18 R 30S RIBOSOMAL PROTEIN S18 274  
75 4V8H 18 AR, CR 30S Ribosomal Protein S18 300852  
76 4JI5 18 R RIBOSOMAL PROTEIN S18 300852  
77 4W2E 51 r 30S ribosomal protein S18 300852  
78 4V8C 48 CU, DU 30S RIBOSOMAL PROTEIN S18 300852  
79 4LF5 18 R ribosomal protein S18 300852  
80 4V9A 18 AU, CU 30S RIBOSOMAL PROTEIN S18 300852  
81 4V5J 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
82 4V7Y 18 AR, CR 30S ribosomal protein S18 300852  
83 4V8E 48 BU, DU 30S RIBOSOMAL PROTEIN S18 300852  
84 4DR4 18 R 30S ribosomal protein S18 300852  
85 3OTO 18 R 30S RIBOSOMAL PROTEIN S18 300852  
86 2UU9 18 R 30S RIBOSOMAL PROTEIN S18 300852  
87 4V8Q 52 BR 30S RIBOSOMAL PROTEIN S18 300852  
88 1HR0 19 R 30S RIBOSOMAL PROTEIN S18 274  
89 4AQY 18 R 30S RIBOSOMAL PROTEIN S18 274  
90 4NXM 18 R ribosomal protein S18 300852  
91 4V5L 18 AR 30S RIBOSOMAL PROTEIN S18 300852  
92 4V7X 18 AR, CR 30S ribosomal protein S18 300852  
93 1IBL 21 R 30S RIBOSOMAL PROTEIN S18 274  
94 4V7W 18 AR, CR 30S ribosomal protein S18 300852  
95 4NXN 18 R ribosomal protein S18 300852  
96 1XNR 20 R 16S Ribosomal protein S18 274  
97 4LT8 18 QR, XR 30S ribosomal protein S18 300852  
98 4V51 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
99 4V7L 18 AR, CR 30S ribosomal protein S18 300852  
100 4V5R 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
101 1HNZ 19 R 30S RIBOSOMAL PROTEIN S18 274  
102 1XNQ 20 R Ribosomal protein S18 274  
103 4V8A 48 CR, DR 30S ribosomal protein S18 300852  
104 4V5K 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
105 4V5Q 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
106 4V7J 17 Ar, Br 30S ribosomal protein S18 300852  
107 4V5C 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
108 4V5E 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
109 4L47 18 QR, XR 30S ribosomal protein S18 300852  
110 4V5P 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
111 4V5D 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
112 4V7Z 18 AR, CR 30S ribosomal protein S18 300852  
113 4V8X 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
114 4V5S 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
115 1XMO 20 R 30S ribosomal protein S18 274  
116 3T1H 18 R 30S ribosomal protein S18 274  
117 2UXD 18 R RIBOSOMAL PROTEIN S18 300852  
118 1N33 20 R 30S RIBOSOMAL PROTEIN S18 274  
119 1IBK 19 R 30S RIBOSOMAL PROTEIN S18 274  
120 4V6G 18 AU, CU 30S RIBOSOMAL PROTEIN S18 300852  
121 4V8N 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
122 4V97 18 AR, CR 30S ribosomal protein S18 300852  
123 1HNW 19 R 30S RIBOSOMAL PROTEIN S18 274  
124 4V7M 18 AR, CR 30S ribosomal protein S18 300852  
125 1IBM 21 R 30S RIBOSOMAL PROTEIN S18 274  
126 4V6A 18 AR, CR 30S ribosomal protein S18 300852  
127 4V7K 17 Ar, Br 30S ribosomal protein S18 300852  
128 1HNX 19 R 30S RIBOSOMAL PROTEIN S18 274  
129 4P70 18 QR, XR 30S ribosomal protein S18 300852  
130 4V8U 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
131 4LSK 18 QR, XR 30S ribosomal protein S18 300852  
132 4P6F 18 QR, XR 30S ribosomal protein S18 300852  
133 4V67 20 AR, CR 30S ribosomal protein S18 274  
134 4V5F 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
135 1VVJ 18 QR, XR 30S ribosomal protein S18 300852  
136 4LFZ 18 QR, XR 30S ribosomal protein S18 300852  
137 2E5L 19 R 30S ribosomal protein S18 274  
138 2HHH 18 R 30S ribosomal protein S18 300852  
139 4OX9 18 R 30S ribosomal protein S18 300852  
140 2UXB 18 R RIBOSOMAL PROTEIN S18 300852  
141 1I96 18 R 30S RIBOSOMAL PROTEIN S18 274  
142 1N34 19 R 30S RIBOSOMAL PROTEIN S18 274  
143 4V5A 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
144 4V63 20 AR, CR 30S ribosomal protein S18 262724  
145 4L71 18 QR, XR 30S ribosomal protein S18 300852  
146 4KVB 17 R 30S ribosomal protein S18 262724  
147 4V8J 18 AR, CR 30S ribosomal protein S18 300852  
148 1N36 18 R 30S RIBOSOMAL PROTEIN S18 274  
149 2ZM6 18 R 30S ribosomal protein S18 274  
150 4LEL 18 QR, XR 30S ribosomal protein S18 300852  
151 2F4V 19 R 30S ribosomal protein S18 274  
152 1FKA 18 R 30S RIBOSOMAL PROTEIN S18 274  
153 4V5G 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
154 1I97 18 R 30S RIBOSOMAL PROTEIN S18 274  
155 1I95 18 R 30S RIBOSOMAL PROTEIN S18 274  
156 4V8O 18 AR 30S RIBOSOMAL PROTEIN S18 300852  
157 4V4Y 20 AU 30S ribosomal protein S18 300852  
158 4V4J 51 s 30S ribosomal protein S18 262724  
159 4V4X 20 AU 30S ribosomal protein S18 300852  
160 4V4Z 21 AU 30S ribosomal protein S18 300852  
161 4V4I 51 s 30S ribosomal protein S18 262724  
162 4V4P 53 BU 30S ribosomal protein S18 300852  
163 4V4R 21 AR 30S ribosomal protein S18 300852  
164 4V4S 21 AR 30S ribosomal protein S18 300852  
165 4V4T 21 AR 30S ribosomal protein S18 300852  
166 4V5N 18 AR 30S RIBOSOMAL PROTEIN S18 300852  
167 4V5M 18 AR 30S RIBOSOMAL PROTEIN S18 300852  
168 1ML5 23 U 30S RIBOSOMAL PROTEIN S18 562  
169 1JGO 21 U 30S RIBOSOMAL PROTEIN S18 274  
170 1JGP 21 U 30S RIBOSOMAL PROTEIN S18 274  
171 1JGQ 21 U 30S RIBOSOMAL PROTEIN S18 274  
172 4V42 21 AU 30S RIBOSOMAL PROTEIN S18 274  
 
Sequence Clusters for the Sequence Entities in PDB 4JI8
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 194 28
95% 33 195 46
90% 33 195 48
70% 33 195 59
50% 43 276 35
40% 43 276 45
30% 48 326 46
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 196 26
95% 33 196 42
90% 33 196 44
70% 33 196 55
50% 37 270 42
40% 44 325 36
30% 44 325 47
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 17765
95% 33 203 31
90% 33 203 33
70% 37 282 24
50% 37 282 34
40% 37 282 44
30% 37 282 69
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 197 23
95% 33 197 38
90% 33 197 40
70% 33 197 52
50% 37 275 39
40% 37 275 51
30% 42 326 49
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 195 27
95% 33 195 47
90% 33 195 49
70% 33 195 60
50% 33 195 92
40% 33 195 116
30% 33 195 139
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 199 19
95% 35 204 30
90% 35 204 32
70% 35 204 44
50% 42 283 33
40% 42 283 43
30% 42 283 68
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 191 29
95% 33 196 44
90% 33 196 46
70% 33 196 57
50% 33 196 89
40% 33 196 114
30% 37 273 77
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 110 66
95% 33 190 49
90% 33 194 50
70% 33 194 61
50% 33 194 93
40% 33 194 117
30% 33 194 141
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 123 59
95% 30 172 70
90% 30 172 74
70% 30 172 88
50% 30 172 125
40% 30 172 146
30% 30 172 165
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 174 47
95% 31 174 69
90% 31 174 73
70% 31 174 87
50% 38 273 38
40% 38 273 49
30% 38 273 73
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 196 24
95% 33 197 35
90% 33 197 38
70% 33 197 50
50% 33 197 88
40% 37 270 53
30% 37 270 76
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 146 54
95% 33 195 45
90% 33 195 47
70% 33 195 58
50% 33 195 91
40% 33 195 115
30% 33 195 138
Entity #21: Chains: U - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 186 32
95% 33 186 51
90% 33 186 54
70% 33 186 66
50% 33 186 110
40% 33 186 133
30% 33 186 151
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 171 48
95% 30 171 72
90% 30 171 76
70% 30 171 90
50% 31 210 76
40% 31 210 101
30% 31 210 121
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 189 30
95% 33 197 36
90% 33 197 39
70% 33 197 51
50% 37 270 40
40% 37 271 52
30% 37 271 75
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 196 25
95% 33 196 40
90% 33 196 42
70% 33 196 54
50% 38 274 37
40% 38 274 48
30% 38 276 71
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 201 17
95% 40 207 29
90% 40 207 31
70% 40 207 42
50% 40 207 81
40% 40 207 108
30% 45 244 90
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 200 18
95% 34 201 33
90% 34 201 35
70% 34 201 46
50% 38 242 55
40% 38 243 71
30% 38 243 95
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 196 22
95% 34 196 37
90% 34 200 36
70% 34 200 47
50% 40 276 36
40% 41 278 46
30% 47 330 45
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 106 86
95% 33 196 43
90% 33 196 45
70% 33 196 56
50% 37 270 41
40% 37 270 54
30% 42 321 50
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.