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Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Sequence Clustering and Redundancy Reduction Results
4JI8
Cluster # 55 Members. Sequence cutoff: 95% Cluster size: 180 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4Y4O 49 1r, 2r 30S ribosomal protein S18 300852  
2 4W2F 18 AR, CR 30S Ribosomal Protein S18 300852  
3 4Y4P 49 1r, 2r 30S ribosomal protein S18 300852  
4 4W2G 18 AR, CR 30S Ribosomal Protein S18 300852  
5 4LFB 18 R ribosomal protein S18 300852  
6 1VY4 18 AR, CR 30S ribosomal protein S18 300852  
7 4W2I 18 AR, CR 30S Ribosomal Protein S18 300852  
8 1VY5 18 AR, CR 30S ribosomal protein S18 300852  
9 4WQF 51 BR, DR 30S ribosomal protein S18 300852  
10 4W2H 18 AR, CR 30S Ribosomal Protein S18 300852  
11 4WPO 51 BR, DR 30S ribosomal protein S18 300852  
12 4V8I 18 AR, CR 30S Ribosomal Protein S18 274  
13 4JI1 18 R RIBOSOMAL PROTEIN S18 300852  
14 4DR6 18 R 30S ribosomal protein S18 300852  
15 4LF7 18 R ribosomal protein S18 300852  
16 4LF8 18 R ribosomal protein S18 300852  
17 4WQU 51 BR, DR 30S ribosomal protein S18 300852  
18 2VQE 18 R 30S RIBOSOMAL PROTEIN S18 300852  
19 4Z8C 49 1r, 2r 30S ribosomal protein S18 300852  
20 2UUB 18 R 30S RIBOSOMAL PROTEIN S18 300852  
21 4DV6 18 R ribosomal protein S18 300852  
22 4DR5 18 R 30S ribosomal protein S18 300852  
23 4DR2 18 R 30S ribosomal protein S18 300852  
24 4LF9 18 R ribosomal protein S18 300852  
25 4WQY 51 BR, DR 30S ribosomal protein S18 300852  
26 4DUY 18 R ribosomal protein S18 300852  
27 4DV7 18 R ribosomal protein S18 300852  
28 4V8D 18 AU, CU 30S RIBOSOMAL PROTEIN S18 300852  
29 4DR3 18 R 30S ribosomal protein S18 300852  
30 4V90 18 AR 30S RIBOSOMAL PROTEIN S18 300852  
31 4JI3 18 R RIBOSOMAL PROTEIN S18 300852  
32 4JI6 18 R RIBOSOMAL PROTEIN S18 300852  
33 4JI8 18 R RIBOSOMAL PROTEIN S18 300852  
34 2UXC 18 R RIBOSOMAL PROTEIN S18 300852  
35 4V9R 18 AR, CR 30S Ribosomal Protein S18 274  
36 4B3M 18 R 30S RIBOSOMAL PROTEIN S18 300852  
37 4LF4 18 R ribosomal protein S18 300852  
38 4LF6 18 R ribosomal protein S18 300852  
39 4JI7 18 R RIBOSOMAL PROTEIN S18 300852  
40 4B3T 18 R 30S RIBOSOMAL PROTEIN S18 300852  
41 4V8B 18 AU, CU 30S RIBOSOMAL PROTEIN S18 300852  
42 2VQF 18 R 30S RIBOSOMAL PROTEIN S18 300852  
43 2UUA 18 R 30S RIBOSOMAL PROTEIN S18 300852  
44 4V87 48 BU, CU 30S RIBOSOMAL PROTEIN S18 300852  
45 4V95 18 AR, CR 30S Ribosomal Protein S18 274  
46 1VY7 18 AR, CR 30S ribosomal protein S18 300852  
47 4B3R 18 R 30S RIBOSOMAL PROTEIN S18 300852  
48 4LNT 18 QR, XR 30S ribosomal protein S18 300852  
49 1G1X 5 C, H 30S RIBOSOMAL PROTEIN S18 274  
50 4DR1 18 R 30S ribosomal protein S18 300852  
51 4LFA 18 R ribosomal protein S18 300852  
52 4DV4 18 R ribosomal protein S18 300852  
53 4JI0 18 R ribosomal protein S18 300852  
54 4V9S 18 AR, CR 30S Ribosomal Protein S18 274  
55 4JI2 18 R RIBOSOMAL PROTEIN S18 300852  
56 4DR7 18 R 30S ribosomal protein S18 300852  
57 1J5E 18 R 30S RIBOSOMAL PROTEIN S18 274  
58 4DUZ 18 R ribosomal protein S18 300852  
59 4V8G 18 AR, CR 30S Ribosomal Protein S18 300852  
60 4DV3 18 R ribosomal protein S18 300852  
61 4DV5 18 R ribosomal protein S18 300852  
62 2UUC 18 R 30S RIBOSOMAL PROTEIN S18 300852  
63 4LFC 18 R ribosomal protein S18 300852  
64 1FJG 19 R 30S RIBOSOMAL PROTEIN S18 274  
65 3T1Y 18 R 30S ribosomal protein S18 274  
66 4JI4 18 R RIBOSOMAL PROTEIN S18 300852  
67 1VY6 18 AR, CR 30S ribosomal protein S18 300852  
68 1XMQ 20 R 30S Ribosomal Protein S18 274  
69 4DV0 18 R ribosomal protein S18 300852  
70 4V9B 18 AU, CU 30S RIBOSOMAL PROTEIN S18 300852  
71 4V6F 48 BU, CU 30S ribosomal protein S18 300852  
72 4V8F 48 BU, CU 30S RIBOSOMAL PROTEIN S18 300852  
73 4B3S 18 R 30S RIBOSOMAL PROTEIN S18 300852  
74 4DV2 18 R ribosomal protein S18 300852  
75 4DV1 18 R ribosomal protein S18 300852  
76 1N32 20 R 30S RIBOSOMAL PROTEIN S18 274  
77 1I94 18 R 30S RIBOSOMAL PROTEIN S18 274  
78 4V8H 18 AR, CR 30S Ribosomal Protein S18 300852  
79 4JI5 18 R RIBOSOMAL PROTEIN S18 300852  
80 4W2E 51 r 30S ribosomal protein S18 300852  
81 4V8C 48 CU, DU 30S RIBOSOMAL PROTEIN S18 300852  
82 4LF5 18 R ribosomal protein S18 300852  
83 4V9A 18 AU, CU 30S RIBOSOMAL PROTEIN S18 300852  
84 4V5J 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
85 4V7Y 18 AR, CR 30S ribosomal protein S18 300852  
86 4V8E 48 BU, DU 30S RIBOSOMAL PROTEIN S18 300852  
87 4DR4 18 R 30S ribosomal protein S18 300852  
88 3OTO 18 R 30S RIBOSOMAL PROTEIN S18 300852  
89 2UU9 18 R 30S RIBOSOMAL PROTEIN S18 300852  
90 4V8Q 52 BR 30S RIBOSOMAL PROTEIN S18 300852  
91 1HR0 19 R 30S RIBOSOMAL PROTEIN S18 274  
92 4AQY 18 R 30S RIBOSOMAL PROTEIN S18 274  
93 4NXM 18 R ribosomal protein S18 300852  
94 4V5L 18 AR 30S RIBOSOMAL PROTEIN S18 300852  
95 4V7X 18 AR, CR 30S ribosomal protein S18 300852  
96 1IBL 21 R 30S RIBOSOMAL PROTEIN S18 274  
97 4V7W 18 AR, CR 30S ribosomal protein S18 300852  
98 4NXN 18 R ribosomal protein S18 300852  
99 1XNR 20 R 16S Ribosomal protein S18 274  
100 4LT8 18 QR, XR 30S ribosomal protein S18 300852  
101 4V51 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
102 4V7L 18 AR, CR 30S ribosomal protein S18 300852  
103 4V5R 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
104 1HNZ 19 R 30S RIBOSOMAL PROTEIN S18 274  
105 1XNQ 20 R Ribosomal protein S18 274  
106 4V8A 48 CR, DR 30S ribosomal protein S18 300852  
107 4V5K 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
108 4V5Q 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
109 4V7J 17 Ar, Br 30S ribosomal protein S18 300852  
110 4V5C 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
111 4V5E 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
112 4L47 18 QR, XR 30S ribosomal protein S18 300852  
113 4V5P 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
114 4V5D 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
115 4V7Z 18 AR, CR 30S ribosomal protein S18 300852  
116 4V8X 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
117 4V5S 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
118 1XMO 20 R 30S ribosomal protein S18 274  
119 3T1H 18 R 30S ribosomal protein S18 274  
120 2UXD 18 R RIBOSOMAL PROTEIN S18 300852  
121 1N33 20 R 30S RIBOSOMAL PROTEIN S18 274  
122 1IBK 19 R 30S RIBOSOMAL PROTEIN S18 274  
123 4V6G 18 AU, CU 30S RIBOSOMAL PROTEIN S18 300852  
124 4V8N 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
125 4V97 18 AR, CR 30S ribosomal protein S18 300852  
126 1HNW 19 R 30S RIBOSOMAL PROTEIN S18 274  
127 4V7M 18 AR, CR 30S ribosomal protein S18 300852  
128 4TUD 18 QR, XR 30S ribosomal protein S18 300852  
129 1IBM 21 R 30S RIBOSOMAL PROTEIN S18 274  
130 4V6A 18 AR, CR 30S ribosomal protein S18 300852  
131 4TUE 18 QR, XR 30S ribosomal protein S18 300852  
132 4TUA 18 QR, XR 30S ribosomal protein S18 300852  
133 4V7K 17 Ar, Br 30S ribosomal protein S18 300852  
134 1HNX 19 R 30S RIBOSOMAL PROTEIN S18 274  
135 4TUC 18 QR, XR 30S ribosomal protein S18 300852  
136 4TUB 18 QR, XR 30S ribosomal protein S18 300852  
137 4P70 18 QR, XR 30S ribosomal protein S18 300852  
138 4V8U 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
139 4LSK 18 QR, XR 30S ribosomal protein S18 300852  
140 4P6F 18 QR, XR 30S ribosomal protein S18 300852  
141 4V67 20 AR, CR 30S ribosomal protein S18 274  
142 4V5F 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
143 1VVJ 18 QR, XR 30S ribosomal protein S18 300852  
144 4LFZ 18 QR, XR 30S ribosomal protein S18 300852  
145 2E5L 19 R 30S ribosomal protein S18 274  
146 2HHH 18 R 30S ribosomal protein S18 300852  
147 4OX9 18 R 30S ribosomal protein S18 300852  
148 2UXB 18 R RIBOSOMAL PROTEIN S18 300852  
149 1I96 18 R 30S RIBOSOMAL PROTEIN S18 274  
150 1N34 19 R 30S RIBOSOMAL PROTEIN S18 274  
151 4V5A 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
152 4V63 20 AR, CR 30S ribosomal protein S18 262724  
153 4L71 18 QR, XR 30S ribosomal protein S18 300852  
154 4KVB 17 R 30S ribosomal protein S18 262724  
155 4V8J 18 AR, CR 30S ribosomal protein S18 300852  
156 1N36 18 R 30S RIBOSOMAL PROTEIN S18 274  
157 2ZM6 18 R 30S ribosomal protein S18 274  
158 4LEL 18 QR, XR 30S ribosomal protein S18 300852  
159 2F4V 19 R 30S ribosomal protein S18 274  
160 1FKA 18 R 30S RIBOSOMAL PROTEIN S18 274  
161 4V5G 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
162 1I97 18 R 30S RIBOSOMAL PROTEIN S18 274  
163 1I95 18 R 30S RIBOSOMAL PROTEIN S18 274  
164 4V8O 18 AR 30S RIBOSOMAL PROTEIN S18 300852  
165 4V4Y 20 AU 30S ribosomal protein S18 300852  
166 4V4J 51 s 30S ribosomal protein S18 262724  
167 4V4X 20 AU 30S ribosomal protein S18 300852  
168 4V4Z 21 AU 30S ribosomal protein S18 300852  
169 4V4I 51 s 30S ribosomal protein S18 262724  
170 4V4P 53 BU 30S ribosomal protein S18 300852  
171 4V4R 21 AR 30S ribosomal protein S18 300852  
172 4V4S 21 AR 30S ribosomal protein S18 300852  
173 4V4T 21 AR 30S ribosomal protein S18 300852  
174 4V5N 18 AR 30S RIBOSOMAL PROTEIN S18 300852  
175 4V5M 18 AR 30S RIBOSOMAL PROTEIN S18 300852  
176 1ML5 23 U 30S RIBOSOMAL PROTEIN S18 562  
177 1JGO 21 U 30S RIBOSOMAL PROTEIN S18 274  
178 1JGP 21 U 30S RIBOSOMAL PROTEIN S18 274  
179 1JGQ 21 U 30S RIBOSOMAL PROTEIN S18 274  
180 4V42 21 AU 30S RIBOSOMAL PROTEIN S18 274  
 
Sequence Clusters for the Sequence Entities in PDB 4JI8
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 204 25
95% 36 205 45
90% 36 205 47
70% 36 205 57
50% 47 290 35
40% 47 290 45
30% 52 342 46
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 206 23
95% 36 206 41
90% 36 206 43
70% 36 206 52
50% 41 284 41
40% 48 343 34
30% 48 344 45
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 18091
95% 36 213 31
90% 36 213 34
70% 41 295 24
50% 41 296 34
40% 41 296 44
30% 41 296 67
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 207 20
95% 36 207 39
90% 36 207 41
70% 36 207 50
50% 41 289 39
40% 41 289 49
30% 46 343 48
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 205 24
95% 36 205 46
90% 36 205 48
70% 36 206 55
50% 36 206 85
40% 36 206 110
30% 36 206 129
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 209 18
95% 38 214 29
90% 38 214 32
70% 38 214 42
50% 46 297 33
40% 46 298 43
30% 46 298 65
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 201 29
95% 36 206 43
90% 36 206 45
70% 36 206 54
50% 36 206 84
40% 36 207 109
30% 41 287 74
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 120 62
95% 36 200 47
90% 36 204 49
70% 36 204 58
50% 36 204 87
40% 36 204 112
30% 36 204 131
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 131 56
95% 33 180 55
90% 33 180 57
70% 33 180 72
50% 33 180 119
40% 33 180 143
30% 33 180 159
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 209 17
95% 37 209 33
90% 37 209 37
70% 37 209 46
50% 42 287 38
40% 42 287 48
30% 42 287 71
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 206 21
95% 36 207 35
90% 36 207 38
70% 36 207 47
50% 41 283 43
40% 41 284 51
30% 41 284 73
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 156 52
95% 36 205 44
90% 36 205 46
70% 36 205 56
50% 36 205 86
40% 36 205 111
30% 36 205 130
Entity #21: Chains: U - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 196 32
95% 36 196 51
90% 36 196 53
70% 36 196 64
50% 36 196 97
40% 36 196 120
30% 36 196 143
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 179 36
95% 33 179 56
90% 33 179 59
70% 33 179 73
50% 34 220 77
40% 34 220 100
30% 34 220 120
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 199 30
95% 36 207 37
90% 36 207 40
70% 36 207 49
50% 41 284 40
40% 41 285 50
30% 41 285 72
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 206 22
95% 36 206 40
90% 36 206 42
70% 36 206 51
50% 42 288 37
40% 42 288 47
30% 42 290 69
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 211 15
95% 43 217 28
90% 43 217 31
70% 43 217 41
50% 43 217 78
40% 43 217 102
30% 49 256 85
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 210 16
95% 37 211 32
90% 37 211 35
70% 37 211 44
50% 42 254 51
40% 42 255 67
30% 42 255 88
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 206 19
95% 37 206 38
90% 37 210 36
70% 37 210 45
50% 44 290 36
40% 45 292 46
30% 51 347 44
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 116 81
95% 36 206 42
90% 36 206 44
70% 36 206 53
50% 41 284 42
40% 41 284 52
30% 46 338 49
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.