Sequence Similarity Clusters for the Entities in PDB 4JI8

Entity #1 | Chains: A
16S rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 237 25
95 % 47 238 38
90 % 47 238 43
70 % 47 238 53
50 % 59 330 30
40 % 59 330 40
30 % 64 396 41
Entity #11 | Chains: K
RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 239 23
95 % 47 239 34
90 % 47 239 39
70 % 47 239 48
50 % 53 324 38
40 % 60 397 27
30 % 60 398 39
Entity #12 | Chains: L
RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 19424
95 % 47 246 22
90 % 47 246 27
70 % 53 335 23
50 % 53 336 29
40 % 53 336 39
30 % 53 336 56
Entity #13 | Chains: M
RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 240 20
95 % 47 240 32
90 % 47 240 37
70 % 47 240 46
50 % 53 329 35
40 % 53 329 46
30 % 58 397 46
Entity #14 | Chains: N
RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 238 24
95 % 47 238 39
90 % 47 238 44
70 % 47 239 51
50 % 47 239 82
40 % 47 239 107
30 % 47 239 123
Entity #15 | Chains: O
RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 242 16
95 % 49 247 21
90 % 49 247 26
70 % 49 247 37
50 % 58 337 27
40 % 58 338 38
30 % 58 338 54
Entity #16 | Chains: P
RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 234 26
95 % 47 239 36
90 % 47 239 41
70 % 47 239 50
50 % 47 239 81
40 % 47 240 106
30 % 53 327 64
Entity #17 | Chains: Q
RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 39 149 57
95 % 47 233 40
90 % 47 237 45
70 % 47 237 54
50 % 47 237 87
40 % 47 237 113
30 % 47 237 128
Entity #18 | Chains: R
RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 156 56
95 % 41 205 63
90 % 41 205 66
70 % 41 205 75
50 % 41 205 109
40 % 41 205 129
30 % 41 205 145
Entity #19 | Chains: S
RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 48 242 15
95 % 48 242 26
90 % 48 242 31
70 % 48 242 42
50 % 54 327 34
40 % 54 327 44
30 % 54 327 60
Entity #2 | Chains: B
RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 239 17
95 % 47 240 27
90 % 47 240 33
70 % 47 240 43
50 % 53 323 37
40 % 53 324 47
30 % 53 324 63
Entity #20 | Chains: T
RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 46 188 48
95 % 47 238 37
90 % 47 238 42
70 % 47 238 52
50 % 47 238 83
40 % 47 238 109
30 % 47 238 125
Entity #21 | Chains: U
RIBOSOMAL PROTEIN THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 229 39
95 % 47 229 54
90 % 47 229 58
70 % 47 229 69
50 % 47 229 96
40 % 47 229 118
30 % 47 229 132
Entity #3 | Chains: C
RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 204 43
95 % 41 204 64
90 % 41 204 67
70 % 41 204 76
50 % 43 252 68
40 % 43 252 93
30 % 43 252 110
Entity #4 | Chains: D
RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 232 27
95 % 47 240 28
90 % 47 240 34
70 % 47 240 44
50 % 53 324 36
40 % 53 325 45
30 % 53 325 62
Entity #5 | Chains: E
RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 239 22
95 % 47 239 33
90 % 47 239 38
70 % 47 239 47
50 % 54 328 33
40 % 54 328 43
30 % 54 330 59
Entity #6 | Chains: F
RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 48 244 13
95 % 54 250 20
90 % 54 250 25
70 % 54 250 35
50 % 54 250 70
40 % 54 250 94
30 % 60 289 80
Entity #7 | Chains: G
RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 48 243 14
95 % 48 244 25
90 % 48 244 29
70 % 48 244 40
50 % 53 289 50
40 % 53 290 62
30 % 53 290 83
Entity #8 | Chains: H
RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 48 239 19
95 % 48 239 31
90 % 48 243 30
70 % 48 243 41
50 % 56 330 31
40 % 57 332 41
30 % 63 401 37
Entity #9 | Chains: I
RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 43 149 70
95 % 47 239 35
90 % 47 239 40
70 % 47 239 49
50 % 53 324 39
40 % 53 324 49
30 % 58 392 47

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4Y4O 49 1r, 2r 30S ribosomal protein S18 274
2 4W2F 18 AR, CR 30S Ribosomal Protein S18 274
3 4Y4P 49 1r, 2r 30S ribosomal protein S18 274
4 4W2G 18 AR, CR 30S Ribosomal Protein S18 274
5 4LFB 18 R ribosomal protein S18 274
6 1VY4 18 AR, CR 30S ribosomal protein S18 274
7 4W2I 18 AR, CR 30S Ribosomal Protein S18 274
8 1VY5 18 AR, CR 30S ribosomal protein S18 274
9 4WQF 51 BR, DR 30S ribosomal protein S18 274
10 4W2H 18 AR, CR 30S Ribosomal Protein S18 274
11 4WPO 51 BR, DR 30S ribosomal protein S18 274
12 4V8I 18 AR, CR 30S Ribosomal Protein S18 274
13 4JI1 18 R RIBOSOMAL PROTEIN S18 274
14 4Z3S 49 1r, 2r 30S ribosomal protein S18 274
15 5DOY 49 1r, 2r 30S Ribosomal Protein S18 274
16 4DR6 18 R 30S ribosomal protein S18 274
17 4LF7 18 R ribosomal protein S18 274
18 4LF8 18 R ribosomal protein S18 274
19 4WSD 18 9A, 9I 30S ribosomal protein S18 274
20 4WQU 51 BR, DR 30S ribosomal protein S18 274
21 5E81 18 9A, 9I 30S ribosomal protein S18 274
22 2VQE 18 R 30S RIBOSOMAL PROTEIN S18 274
23 4Z8C 49 1r, 2r 30S ribosomal protein S18 274
24 2UUB 18 R 30S RIBOSOMAL PROTEIN S18 274
25 4DV6 18 R ribosomal protein S18 274
26 4DR5 18 R 30S ribosomal protein S18 274
27 4DR2 18 R 30S ribosomal protein S18 274
28 4WRO 22 9I 30S ribosomal protein S18 274
29 4WQ1 18 9A, 9I 30S ribosomal protein S18 274
30 4LF9 18 R ribosomal protein S18 274
31 4WQY 51 BR, DR 30S ribosomal protein S18 274
32 4DUY 18 R ribosomal protein S18 274
33 4DV7 18 R ribosomal protein S18 274
34 4WRA 18 9A, 9I 30S ribosomal protein S18 274
35 4V8D 18 AU, CU 30S RIBOSOMAL PROTEIN S18 274
36 4DR3 18 R 30S ribosomal protein S18 274
37 4V90 18 AR 30S RIBOSOMAL PROTEIN S18 274
38 4JI3 18 R RIBOSOMAL PROTEIN S18 274
39 4WQR 18 9A, 9I 30S ribosomal protein S18 274
40 4JI6 18 R RIBOSOMAL PROTEIN S18 274
41 4JI8 18 R RIBOSOMAL PROTEIN S18 274
42 2UXC 18 R RIBOSOMAL PROTEIN S18 274
43 4V9R 18 AR, CR 30S Ribosomal Protein S18 274
44 4B3M 18 R 30S RIBOSOMAL PROTEIN S18 274
45 5EL6 18 9A, 9I 30S ribosomal protein S18 274
46 5EL7 18 9A, 9I 30S ribosomal protein S18 274
47 4LF4 18 R ribosomal protein S18 274
48 4LF6 18 R ribosomal protein S18 274
49 4JI7 18 R RIBOSOMAL PROTEIN S18 274
50 4WU1 18 9A, 9I 30S ribosomal protein S18 274
51 5EL4 18 9A, 9I 30S ribosomal protein S18 274
52 4B3T 18 R 30S RIBOSOMAL PROTEIN S18 274
53 4WR6 18 9A, 9I 30S ribosomal protein S18 274
54 4V8B 18 AU, CU 30S RIBOSOMAL PROTEIN S18 274
55 2VQF 18 R 30S RIBOSOMAL PROTEIN S18 274
56 2UUA 18 R 30S RIBOSOMAL PROTEIN S18 274
57 4V87 48 BU, CU 30S RIBOSOMAL PROTEIN S18 274
58 4V95 18 AR, CR 30S Ribosomal Protein S18 274
59 1VY7 18 AR, CR 30S ribosomal protein S18 274
60 5E7K 18 9A, 9I 30S ribosomal protein S18 274
61 5EL5 18 9A, 9I 30S ribosomal protein S18 274
62 4B3R 18 R 30S RIBOSOMAL PROTEIN S18 274
63 4LNT 18 QR, XR 30S ribosomal protein S18 274
64 1G1X 5 C, H 30S RIBOSOMAL PROTEIN S18 274
65 4DR1 18 R 30S ribosomal protein S18 274
66 4LFA 18 R ribosomal protein S18 274
67 4DV4 18 R ribosomal protein S18 274
68 4YZV 18 QR, XR 30S ribosomal protein S18 274
69 4JI0 18 R ribosomal protein S18 274
70 4V9S 18 AR, CR 30S Ribosomal Protein S18 274
71 4JI2 18 R RIBOSOMAL PROTEIN S18 274
72 4DR7 18 R 30S ribosomal protein S18 274
73 1J5E 18 R 30S RIBOSOMAL PROTEIN S18 274
74 4DUZ 18 R ribosomal protein S18 274
75 4V8G 18 AR, CR 30S Ribosomal Protein S18 274
76 4DV3 18 R ribosomal protein S18 274
77 4DV5 18 R ribosomal protein S18 274
78 2UUC 18 R 30S RIBOSOMAL PROTEIN S18 274
79 4LFC 18 R ribosomal protein S18 274
80 1FJG 19 R 30S RIBOSOMAL PROTEIN S18 274
81 3T1Y 18 R 30S ribosomal protein S18 274
82 4WZO 18 9A, 9I 30S ribosomal protein S18 274
83 4JI4 18 R RIBOSOMAL PROTEIN S18 274
84 1VY6 18 AR, CR 30S ribosomal protein S18 274
85 1XMQ 20 R 30S Ribosomal Protein S18 274
86 4DV0 18 R ribosomal protein S18 274
87 4V9B 18 AU, CU 30S RIBOSOMAL PROTEIN S18 274
88 4V6F 48 BU, CU 30S ribosomal protein S18 274
89 4V8F 48 BU, CU 30S RIBOSOMAL PROTEIN S18 274
90 4B3S 18 R 30S RIBOSOMAL PROTEIN S18 274
91 4DV2 18 R ribosomal protein S18 274
92 4DV1 18 R ribosomal protein S18 274
93 1N32 20 R 30S RIBOSOMAL PROTEIN S18 274
94 1I94 18 R 30S RIBOSOMAL PROTEIN S18 274
95 4V8H 18 AR, CR 30S Ribosomal Protein S18 274
96 4JI5 18 R RIBOSOMAL PROTEIN S18 274
97 4W2E 51 r 30S ribosomal protein S18 274
98 4V8C 48 CU, DU 30S RIBOSOMAL PROTEIN S18 274
99 5BR8 18 R 30S ribosomal protein S18 274
100 4LF5 18 R ribosomal protein S18 274
101 4V9A 18 AU, CU 30S RIBOSOMAL PROTEIN S18 274
102 4V5J 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
103 4V7Y 18 AR, CR 30S ribosomal protein S18 274
104 4V8E 48 BU, DU 30S RIBOSOMAL PROTEIN S18 274
105 4DR4 18 R 30S ribosomal protein S18 274
106 4WZD 18 9A, 9I 30S ribosomal protein S18 274
107 3OTO 18 R 30S RIBOSOMAL PROTEIN S18 274
108 2UU9 18 R 30S RIBOSOMAL PROTEIN S18 274
109 4V8Q 52 BR 30S RIBOSOMAL PROTEIN S18 274
110 1HR0 19 R 30S RIBOSOMAL PROTEIN S18 274
111 4AQY 18 R 30S RIBOSOMAL PROTEIN S18 274
112 4W4G 18 QR, XR 30S ribosomal protein S18 274
113 4NXM 18 R ribosomal protein S18 274
114 4V5L 18 AR 30S RIBOSOMAL PROTEIN S18 274
115 4YPB 18 QR, XR 30S ribosomal protein S18 274
116 4V7X 18 AR, CR 30S ribosomal protein S18 274
117 1IBL 21 R 30S RIBOSOMAL PROTEIN S18 274
118 4V7W 18 AR, CR 30S ribosomal protein S18 274
119 4WT1 18 9A, 9I 30S ribosomal protein S18 274
120 5DOX 49 1r, 2r 30S ribosomal protein S18 274
121 4NXN 18 R ribosomal protein S18 274
122 1XNR 20 R 16S Ribosomal protein S18 274
123 4LT8 18 QR, XR 30S ribosomal protein S18 274
124 4V51 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
125 4V7L 18 AR, CR 30S ribosomal protein S18 274
126 4V5R 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
127 1HNZ 19 R 30S RIBOSOMAL PROTEIN S18 274
128 1XNQ 20 R Ribosomal protein S18 274
129 4V8A 48 CR, DR 30S ribosomal protein S18 274
130 4V5K 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
131 4V5Q 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
132 4V7J 17 Ar, Br 30S ribosomal protein S18 274
133 4V5C 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
134 4V5E 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
135 4L47 18 QR, XR 30S ribosomal protein S18 274
136 4V5P 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
137 4V5D 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
138 4V7Z 18 AR, CR 30S ribosomal protein S18 274
139 4V8X 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
140 4V5S 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
141 1XMO 20 R 30S ribosomal protein S18 274
142 3T1H 18 R 30S ribosomal protein S18 274
143 2UXD 18 R RIBOSOMAL PROTEIN S18 274
144 1N33 20 R 30S RIBOSOMAL PROTEIN S18 274
145 1IBK 19 R 30S RIBOSOMAL PROTEIN S18 274
146 4V6G 18 AU, CU 30S RIBOSOMAL PROTEIN S18 274
147 4V8N 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
148 4V97 18 AR, CR 30S ribosomal protein S18 274
149 1HNW 19 R 30S RIBOSOMAL PROTEIN S18 274
150 4V7M 18 AR, CR 30S ribosomal protein S18 274
151 4WSM 18 9A, 9I 30S ribosomal protein S18 274
152 4TUD 18 QR, XR 30S ribosomal protein S18 274
153 1IBM 21 R 30S RIBOSOMAL PROTEIN S18 274
154 4V6A 18 AR, CR 30S ribosomal protein S18 274
155 4TUE 18 QR, XR 30S ribosomal protein S18 274
156 4TUA 18 QR, XR 30S ribosomal protein S18 274
157 4V7K 17 Ar, Br 30S ribosomal protein S18 274
158 1HNX 19 R 30S RIBOSOMAL PROTEIN S18 274
159 4TUC 18 QR, XR 30S ribosomal protein S18 274
160 4TUB 18 QR, XR 30S ribosomal protein S18 274
161 4P70 18 QR, XR 30S ribosomal protein S18 274
162 4V8U 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
163 4LSK 18 QR, XR 30S ribosomal protein S18 274
164 4P6F 18 QR, XR 30S ribosomal protein S18 274
165 4V67 20 AR, CR 30S ribosomal protein S18 274
166 4V5F 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
167 1VVJ 18 QR, XR 30S ribosomal protein S18 274
168 4LFZ 18 QR, XR 30S ribosomal protein S18 274
169 2E5L 19 R 30S ribosomal protein S18 274
170 2HHH 18 R 30S ribosomal protein S18 274
171 4OX9 18 R 30S ribosomal protein S18 274
172 2UXB 18 R RIBOSOMAL PROTEIN S18 274
173 1I96 18 R 30S RIBOSOMAL PROTEIN S18 274
174 1N34 19 R 30S RIBOSOMAL PROTEIN S18 274
175 4V5A 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
176 4V63 20 AR, CR 30S ribosomal protein S18 274
177 4L71 18 QR, XR 30S ribosomal protein S18 274
178 4KVB 17 R 30S ribosomal protein S18 274
179 4V8J 18 AR, CR 30S ribosomal protein S18 274
180 1N36 18 R 30S RIBOSOMAL PROTEIN S18 274
181 2ZM6 18 R 30S ribosomal protein S18 274
182 5D8B 45 OC, SA 30S ribosomal protein S18 274
183 4LEL 18 QR, XR 30S ribosomal protein S18 274
184 2F4V 19 R 30S ribosomal protein S18 274
185 1FKA 18 R 30S RIBOSOMAL PROTEIN S18 274
186 4V5G 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
187 1I97 18 R 30S RIBOSOMAL PROTEIN S18 274
188 1I95 18 R 30S RIBOSOMAL PROTEIN S18 274
189 4V8O 18 AR 30S RIBOSOMAL PROTEIN S18 274
190 4V4Y 20 AU 30S ribosomal protein S18 274
191 4V4J 51 s 30S ribosomal protein S18 274
192 4V4X 20 AU 30S ribosomal protein S18 274
193 4V4Z 21 AU 30S ribosomal protein S18 274
194 4V4I 51 s 30S ribosomal protein S18 274
195 4V4P 53 BU 30S ribosomal protein S18 274
196 4V4R 21 AR 30S ribosomal protein S18 274
197 4V4S 21 AR 30S ribosomal protein S18 274
198 4V4T 21 AR 30S ribosomal protein S18 274
199 4V5N 18 AR 30S RIBOSOMAL PROTEIN S18 274
200 4V5M 18 AR 30S RIBOSOMAL PROTEIN S18 274
201 1ML5 23 U 30S RIBOSOMAL PROTEIN S18 562
202 1JGO 21 U 30S RIBOSOMAL PROTEIN S18 274
203 1JGP 21 U 30S RIBOSOMAL PROTEIN S18 274
204 1JGQ 21 U 30S RIBOSOMAL PROTEIN S18 274
205 4V42 21 AU 30S RIBOSOMAL PROTEIN S18 274