Sequence Similarity Clusters for the Entities in PDB 4JI8

Entity #1 | Chains: A
16S rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 267 40
95 % 56 268 54
90 % 56 268 58
70 % 56 268 69
50 % 74 402 26
40 % 74 402 37
30 % 79 502 32
Entity #11 | Chains: K
RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 269 37
95 % 56 269 50
90 % 56 269 54
70 % 56 269 64
50 % 68 395 34
40 % 75 501 19
30 % 75 501 33
Entity #12 | Chains: L
RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 22014
95 % 56 276 40
90 % 56 276 44
70 % 68 406 22
50 % 68 412 25
40 % 68 412 35
30 % 68 412 55
Entity #13 | Chains: M
RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 270 35
95 % 56 270 47
90 % 56 270 52
70 % 56 270 62
50 % 68 400 33
40 % 68 400 45
30 % 73 502 36
Entity #14 | Chains: N
RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 268 38
95 % 56 268 55
90 % 56 268 59
70 % 56 271 61
50 % 56 271 90
40 % 56 271 111
30 % 56 271 124
Entity #15 | Chains: O
RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 272 30
95 % 58 277 39
90 % 58 277 43
70 % 58 277 55
50 % 73 408 27
40 % 73 411 36
30 % 73 411 56
Entity #16 | Chains: P
RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 264 41
95 % 56 269 52
90 % 56 269 56
70 % 56 269 66
50 % 56 272 89
40 % 56 272 110
30 % 68 396 64
Entity #17 | Chains: Q
RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 48 176 58
95 % 56 263 57
90 % 56 267 60
70 % 56 267 70
50 % 56 267 94
40 % 56 267 115
30 % 56 267 127
Entity #18 | Chains: R
RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 49 183 56
95 % 50 234 65
90 % 50 234 70
70 % 50 234 81
50 % 50 234 108
40 % 50 234 133
30 % 50 234 142
Entity #19 | Chains: S
RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 272 29
95 % 57 272 43
90 % 57 272 48
70 % 57 272 58
50 % 69 400 30
40 % 69 403 41
30 % 69 403 58
Entity #2 | Chains: B
RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 269 33
95 % 56 270 44
90 % 56 270 50
70 % 56 270 59
50 % 68 392 37
40 % 68 395 46
30 % 68 395 62
Entity #20 | Chains: T
RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 217 51
95 % 56 268 53
90 % 56 268 57
70 % 56 268 68
50 % 56 268 93
40 % 56 268 114
30 % 56 268 126
Entity #21 | Chains: U
RIBOSOMAL PROTEIN THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 259 43
95 % 56 259 59
90 % 56 259 63
70 % 56 259 75
50 % 56 259 98
40 % 56 259 120
30 % 56 259 131
Entity #3 | Chains: C
RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 50 233 48
95 % 50 233 66
90 % 50 233 71
70 % 50 233 82
50 % 52 306 83
40 % 52 306 102
30 % 52 306 114
Entity #4 | Chains: D
RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 262 42
95 % 56 270 45
90 % 56 270 51
70 % 56 270 60
50 % 68 396 32
40 % 68 399 43
30 % 68 399 61
Entity #5 | Chains: E
RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 269 36
95 % 56 269 49
90 % 56 269 53
70 % 56 269 63
50 % 69 400 31
40 % 69 400 44
30 % 69 402 59
Entity #6 | Chains: F
RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 274 27
95 % 63 280 37
90 % 63 280 41
70 % 63 280 52
50 % 63 280 87
40 % 63 280 106
30 % 75 336 93
Entity #7 | Chains: G
RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 273 28
95 % 57 274 41
90 % 57 274 45
70 % 57 274 56
50 % 68 339 71
40 % 68 342 84
30 % 68 342 97
Entity #8 | Chains: H
RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 269 34
95 % 57 269 46
90 % 57 273 46
70 % 57 273 57
50 % 71 401 28
40 % 72 405 38
30 % 78 514 30
Entity #9 | Chains: I
RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 52 178 68
95 % 56 269 51
90 % 56 269 55
70 % 56 269 65
50 % 68 395 35
40 % 68 395 47
30 % 73 501 35

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4Y4O 49 1r, 2r 30S ribosomal protein S18 274
2 5J8B 51 r 30S ribosomal protein S18 274
3 4W2F 18 AR, CR 30S Ribosomal Protein S18 274
4 4Y4P 49 1r, 2r 30S ribosomal protein S18 274
5 5J4B 49 1r, 2r 30S ribosomal protein S18 274
6 4W2G 18 AR, CR 30S Ribosomal Protein S18 274
7 4LFB 18 R ribosomal protein S18 274
8 1VY4 18 AR, CR 30S ribosomal protein S18 274
9 4W2I 18 AR, CR 30S Ribosomal Protein S18 274
10 1VY5 18 AR, CR 30S ribosomal protein S18 274
11 5HCQ 49 1r, 2r 30S ribosomal protein S18 274
12 4WQF 51 BR, DR 30S ribosomal protein S18 274
13 4W2H 18 AR, CR 30S Ribosomal Protein S18 274
14 4WPO 51 BR, DR 30S ribosomal protein S18 274
15 4V8I 18 AR, CR 30S Ribosomal Protein S18 274
16 4JI1 18 R RIBOSOMAL PROTEIN S18 274
17 4Z3S 49 1r, 2r 30S ribosomal protein S18 274
18 5DOY 49 1r, 2r 30S Ribosomal Protein S18 274
19 5HD1 49 1r, 2r 30S ribosomal protein S18 274
20 4DR6 18 R 30S ribosomal protein S18 274
21 4LF7 18 R ribosomal protein S18 274
22 4LF8 18 R ribosomal protein S18 274
23 4WSD 18 9A, 9I 30S ribosomal protein S18 274
24 4WQU 51 BR, DR 30S ribosomal protein S18 274
25 5E81 18 9A, 9I 30S ribosomal protein S18 274
26 2VQE 18 R 30S RIBOSOMAL PROTEIN S18 274
27 4Z8C 49 1r, 2r 30S ribosomal protein S18 274
28 5HCR 49 1r, 2r 30S ribosomal protein S18 274
29 2UUB 18 R 30S RIBOSOMAL PROTEIN S18 274
30 4DV6 18 R ribosomal protein S18 274
31 5IBB 18 9A, 9I 30S ribosomal protein S18 274
32 4DR5 18 R 30S ribosomal protein S18 274
33 5J4C 49 1r, 2r 30S ribosomal protein S18 274
34 4DR2 18 R 30S ribosomal protein S18 274
35 4WRO 22 9I 30S ribosomal protein S18 274
36 4WQ1 18 9A, 9I 30S ribosomal protein S18 274
37 4LF9 18 R ribosomal protein S18 274
38 4WQY 51 BR, DR 30S ribosomal protein S18 274
39 4DUY 18 R ribosomal protein S18 274
40 4DV7 18 R ribosomal protein S18 274
41 4WRA 18 9A, 9I 30S ribosomal protein S18 274
42 5IB7 18 9A, 9I 30S ribosomal protein S18 274
43 5HCP 49 1r, 2r 30S ribosomal protein S18 274
44 4V8D 18 AU, CU 30S RIBOSOMAL PROTEIN S18 274
45 4DR3 18 R 30S ribosomal protein S18 274
46 4V90 18 AR 30S RIBOSOMAL PROTEIN S18 274
47 4JI3 18 R RIBOSOMAL PROTEIN S18 274
48 4WQR 18 9A, 9I 30S ribosomal protein S18 274
49 4JI6 18 R RIBOSOMAL PROTEIN S18 274
50 4JI8 18 R RIBOSOMAL PROTEIN S18 274
51 2UXC 18 R RIBOSOMAL PROTEIN S18 274
52 5IB8 18 9A, 9I 30S ribosomal protein S18 274
53 4V9R 18 AR, CR 30S Ribosomal Protein S18 274
54 4B3M 18 R 30S RIBOSOMAL PROTEIN S18 274
55 5EL6 18 9A, 9I 30S ribosomal protein S18 274
56 5EL7 18 9A, 9I 30S ribosomal protein S18 274
57 4LF4 18 R ribosomal protein S18 274
58 5DFE 52 QR, XR 30S ribosomal protein S18 274
59 4LF6 18 R ribosomal protein S18 274
60 4JI7 18 R RIBOSOMAL PROTEIN S18 274
61 4WU1 18 9A, 9I 30S ribosomal protein S18 274
62 5EL4 18 9A, 9I 30S ribosomal protein S18 274
63 4B3T 18 R 30S RIBOSOMAL PROTEIN S18 274
64 4WR6 18 9A, 9I 30S ribosomal protein S18 274
65 4V8B 18 AU, CU 30S RIBOSOMAL PROTEIN S18 274
66 5HAU 51 1r, 2r 30S ribosomal protein S18 274
67 2VQF 18 R 30S RIBOSOMAL PROTEIN S18 274
68 2UUA 18 R 30S RIBOSOMAL PROTEIN S18 274
69 4V87 48 BU, CU 30S RIBOSOMAL PROTEIN S18 274
70 4V95 18 AR, CR 30S Ribosomal Protein S18 274
71 1VY7 18 AR, CR 30S ribosomal protein S18 274
72 5E7K 18 9A, 9I 30S ribosomal protein S18 274
73 5EL5 18 9A, 9I 30S ribosomal protein S18 274
74 4B3R 18 R 30S RIBOSOMAL PROTEIN S18 274
75 4LNT 18 QR, XR 30S ribosomal protein S18 274
76 1G1X 5 C, H 30S RIBOSOMAL PROTEIN S18 274
77 4DR1 18 R 30S ribosomal protein S18 274
78 4LFA 18 R ribosomal protein S18 274
79 4DV4 18 R ribosomal protein S18 274
80 4YZV 18 QR, XR 30S ribosomal protein S18 274
81 4JI0 18 R ribosomal protein S18 274
82 4V9S 18 AR, CR 30S Ribosomal Protein S18 274
83 4JI2 18 R RIBOSOMAL PROTEIN S18 274
84 4DR7 18 R 30S ribosomal protein S18 274
85 1J5E 18 R 30S RIBOSOMAL PROTEIN S18 274
86 4DUZ 18 R ribosomal protein S18 274
87 4V8G 18 AR, CR 30S Ribosomal Protein S18 274
88 4DV3 18 R ribosomal protein S18 274
89 4DV5 18 R ribosomal protein S18 274
90 2UUC 18 R 30S RIBOSOMAL PROTEIN S18 274
91 4LFC 18 R ribosomal protein S18 274
92 1FJG 19 R 30S RIBOSOMAL PROTEIN S18 274
93 3T1Y 18 R 30S ribosomal protein S18 274
94 4WZO 18 9A, 9I 30S ribosomal protein S18 274
95 4JI4 18 R RIBOSOMAL PROTEIN S18 274
96 1VY6 18 AR, CR 30S ribosomal protein S18 274
97 1XMQ 20 R 30S Ribosomal Protein S18 274
98 4DV0 18 R ribosomal protein S18 274
99 4V9B 18 AU, CU 30S RIBOSOMAL PROTEIN S18 274
100 4V6F 48 BU, CU 30S ribosomal protein S18 274
101 4V8F 48 BU, CU 30S RIBOSOMAL PROTEIN S18 274
102 4B3S 18 R 30S RIBOSOMAL PROTEIN S18 274
103 4DV2 18 R ribosomal protein S18 274
104 4DV1 18 R ribosomal protein S18 274
105 1N32 20 R 30S RIBOSOMAL PROTEIN S18 274
106 1I94 18 R 30S RIBOSOMAL PROTEIN S18 274
107 4V8H 18 AR, CR 30S Ribosomal Protein S18 274
108 4JI5 18 R RIBOSOMAL PROTEIN S18 274
109 4W2E 51 r 30S ribosomal protein S18 274
110 4V8C 48 CU, DU 30S RIBOSOMAL PROTEIN S18 274
111 5BR8 18 R 30S ribosomal protein S18 274
112 4LF5 18 R ribosomal protein S18 274
113 5J4D 52 AB, FD 30S ribosomal protein S18 274
114 4V9A 18 AU, CU 30S RIBOSOMAL PROTEIN S18 274
115 4V5J 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
116 4V7Y 18 AR, CR 30S ribosomal protein S18 274
117 4V8E 48 BU, DU 30S RIBOSOMAL PROTEIN S18 274
118 5J30 49 QR, XR 30S ribosomal protein S18 274
119 4DR4 18 R 30S ribosomal protein S18 274
120 4WZD 18 9A, 9I 30S ribosomal protein S18 274
121 3OTO 18 R 30S RIBOSOMAL PROTEIN S18 274
122 2UU9 18 R 30S RIBOSOMAL PROTEIN S18 274
123 4V8Q 52 BR 30S RIBOSOMAL PROTEIN S18 274
124 1HR0 19 R 30S RIBOSOMAL PROTEIN S18 274
125 4AQY 18 R 30S RIBOSOMAL PROTEIN S18 274
126 4W4G 18 QR, XR 30S ribosomal protein S18 274
127 4NXM 18 R ribosomal protein S18 274
128 4V5L 18 AR 30S RIBOSOMAL PROTEIN S18 274
129 4YPB 18 QR, XR 30S ribosomal protein S18 274
130 4V7X 18 AR, CR 30S ribosomal protein S18 274
131 1IBL 21 R 30S RIBOSOMAL PROTEIN S18 274
132 4V7W 18 AR, CR 30S ribosomal protein S18 274
133 4WT1 18 9A, 9I 30S ribosomal protein S18 274
134 5DOX 49 1r, 2r 30S ribosomal protein S18 274
135 4NXN 18 R ribosomal protein S18 274
136 1XNR 20 R 16S Ribosomal protein S18 274
137 4LT8 18 QR, XR 30S ribosomal protein S18 274
138 4V51 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
139 4V7L 18 AR, CR 30S ribosomal protein S18 274
140 4V5R 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
141 1HNZ 19 R 30S RIBOSOMAL PROTEIN S18 274
142 1XNQ 20 R Ribosomal protein S18 274
143 4V8A 48 CR, DR 30S ribosomal protein S18 274
144 4V5K 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
145 4V5Q 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
146 4V7J 17 Ar, Br 30S ribosomal protein S18 274
147 5J3C 49 QR, XR 30S ribosomal protein S18 274
148 4V5C 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
149 4V5E 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
150 4L47 18 QR, XR 30S ribosomal protein S18 274
151 4V5P 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
152 4ZSN 18 QR, XR 30S ribosomal protein S18 274
153 4V5D 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
154 4V7Z 18 AR, CR 30S ribosomal protein S18 274
155 4V8X 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
156 4V5S 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
157 1XMO 20 R 30S ribosomal protein S18 274
158 3T1H 18 R 30S ribosomal protein S18 274
159 2UXD 18 R RIBOSOMAL PROTEIN S18 274
160 1N33 20 R 30S RIBOSOMAL PROTEIN S18 274
161 1IBK 19 R 30S RIBOSOMAL PROTEIN S18 274
162 4V6G 18 AU, CU 30S RIBOSOMAL PROTEIN S18 274
163 4V8N 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
164 4V97 18 AR, CR 30S ribosomal protein S18 274
165 1HNW 19 R 30S RIBOSOMAL PROTEIN S18 274
166 4V7M 18 AR, CR 30S ribosomal protein S18 274
167 4WSM 18 9A, 9I 30S ribosomal protein S18 274
168 4TUD 18 QR, XR 30S ribosomal protein S18 274
169 1IBM 21 R 30S RIBOSOMAL PROTEIN S18 274
170 4V6A 18 AR, CR 30S ribosomal protein S18 274
171 4TUE 18 QR, XR 30S ribosomal protein S18 274
172 4TUA 18 QR, XR 30S ribosomal protein S18 274
173 4V7K 17 Ar, Br 30S ribosomal protein S18 274
174 4YY3 18 R 30S ribosomal protein S18 274
175 1HNX 19 R 30S RIBOSOMAL PROTEIN S18 274
176 4TUC 18 QR, XR 30S ribosomal protein S18 274
177 4TUB 18 QR, XR 30S ribosomal protein S18 274
178 4P70 18 QR, XR 30S ribosomal protein S18 274
179 4V8U 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
180 4LSK 18 QR, XR 30S ribosomal protein S18 274
181 4P6F 18 QR, XR 30S ribosomal protein S18 274
182 4V67 20 AR, CR 30S ribosomal protein S18 274
183 4V5F 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
184 1VVJ 18 QR, XR 30S ribosomal protein S18 274
185 4LFZ 18 QR, XR 30S ribosomal protein S18 274
186 2E5L 19 R 30S ribosomal protein S18 274
187 5CZP 49 QR, XR 30S ribosomal protein S18 274
188 2HHH 18 R 30S ribosomal protein S18 274
189 4OX9 18 R 30S ribosomal protein S18 274
190 2UXB 18 R RIBOSOMAL PROTEIN S18 274
191 1I96 18 R 30S RIBOSOMAL PROTEIN S18 274
192 1N34 19 R 30S RIBOSOMAL PROTEIN S18 274
193 4V5A 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
194 4V63 20 AR, CR 30S ribosomal protein S18 274
195 4L71 18 QR, XR 30S ribosomal protein S18 274
196 4KVB 17 R 30S ribosomal protein S18 274
197 4V8J 18 AR, CR 30S ribosomal protein S18 274
198 1N36 18 R 30S RIBOSOMAL PROTEIN S18 274
199 2ZM6 18 R 30S ribosomal protein S18 274
200 5D8B 45 OC, SA 30S ribosomal protein S18 274
201 4LEL 18 QR, XR 30S ribosomal protein S18 274
202 2F4V 19 R 30S ribosomal protein S18 274
203 1FKA 18 R 30S RIBOSOMAL PROTEIN S18 274
204 4V5G 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
205 1I97 18 R 30S RIBOSOMAL PROTEIN S18 274
206 1I95 18 R 30S RIBOSOMAL PROTEIN S18 274
207 4V8O 18 AR 30S RIBOSOMAL PROTEIN S18 274
208 4V4Y 20 AU 30S ribosomal protein S18 274
209 4V4J 51 s 30S ribosomal protein S18 274
210 4V4X 20 AU 30S ribosomal protein S18 274
211 4V4Z 21 AU 30S ribosomal protein S18 274
212 4V4I 51 s 30S ribosomal protein S18 274
213 4V4P 53 BU 30S ribosomal protein S18 274
214 4V4R 21 AR 30S ribosomal protein S18 274
215 4V4S 21 AR 30S ribosomal protein S18 274
216 4V4T 21 AR 30S ribosomal protein S18 274
217 5LMN 18 R 30S ribosomal protein S18 Q5SLQ0 274
218 5LMO 18 R 30S ribosomal protein S18 274
219 5LMP 18 R 30S ribosomal protein S18 274
220 5LMQ 18 R 30S ribosomal protein S18 274
221 5LMR 18 R 30S ribosomal protein S18 274
222 5LMS 18 R 30S ribosomal protein S18 274
223 5LMT 18 R 30S ribosomal protein S18 274
224 5LMU 18 R 30S ribosomal protein S18 274
225 5LMV 18 R 30S ribosomal protein S18 274
226 5IMQ 25 V 30S ribosomal protein S18 274
227 5IMR 18 V 30S ribosomal protein S18 274
228 4V5N 18 AR 30S RIBOSOMAL PROTEIN S18 274
229 4V5M 18 AR 30S RIBOSOMAL PROTEIN S18 274
230 1ML5 23 U 30S RIBOSOMAL PROTEIN S18 562
231 1JGO 21 U 30S RIBOSOMAL PROTEIN S18 274
232 1JGP 21 U 30S RIBOSOMAL PROTEIN S18 274
233 1JGQ 21 U 30S RIBOSOMAL PROTEIN S18 274
234 4V42 21 AU 30S RIBOSOMAL PROTEIN S18 274