Sequence Similarity Clusters for the Entities in PDB 4JI8

Entity #1 | Chains: A
16S rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 269 39
95 % 57 270 53
90 % 57 270 58
70 % 57 270 68
50 % 75 421 26
40 % 75 421 38
30 % 81 528 32
Entity #11 | Chains: K
RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 271 35
95 % 57 271 49
90 % 57 271 54
70 % 57 271 64
50 % 69 415 32
40 % 77 537 19
30 % 77 537 31
Entity #12 | Chains: L
RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 22790
95 % 57 278 39
90 % 57 278 44
70 % 69 422 19
50 % 69 432 24
40 % 69 432 35
30 % 69 432 55
Entity #13 | Chains: M
RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 272 33
95 % 57 272 46
90 % 57 272 51
70 % 57 272 62
50 % 69 419 31
40 % 69 419 43
30 % 75 527 36
Entity #14 | Chains: N
RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 270 36
95 % 57 270 54
90 % 57 270 59
70 % 57 279 54
50 % 57 279 90
40 % 57 279 113
30 % 57 279 123
Entity #15 | Chains: O
RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 274 30
95 % 59 279 38
90 % 59 279 43
70 % 59 279 53
50 % 74 428 25
40 % 74 433 34
30 % 74 433 54
Entity #16 | Chains: P
RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 266 41
95 % 57 271 51
90 % 57 271 56
70 % 57 271 66
50 % 57 278 91
40 % 57 278 114
30 % 69 413 63
Entity #17 | Chains: Q
RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 49 178 58
95 % 57 265 56
90 % 57 269 60
70 % 57 269 69
50 % 57 269 94
40 % 57 269 117
30 % 57 269 128
Entity #18 | Chains: R
RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 50 185 56
95 % 51 236 65
90 % 51 236 69
70 % 51 236 81
50 % 51 236 111
40 % 51 236 135
30 % 51 236 144
Entity #19 | Chains: S
RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 58 274 29
95 % 58 274 42
90 % 58 274 48
70 % 58 274 58
50 % 70 421 28
40 % 70 424 40
30 % 70 424 57
Entity #2 | Chains: B
RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 271 31
95 % 57 272 43
90 % 57 272 49
70 % 57 272 59
50 % 69 409 36
40 % 69 414 45
30 % 69 414 62
Entity #20 | Chains: T
RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 219 50
95 % 57 270 52
90 % 57 270 57
70 % 57 270 67
50 % 57 270 93
40 % 57 270 116
30 % 57 270 127
Entity #21 | Chains: U
RIBOSOMAL PROTEIN THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 261 43
95 % 57 261 59
90 % 57 261 63
70 % 57 261 74
50 % 57 261 98
40 % 57 261 121
30 % 57 261 133
Entity #3 | Chains: C
RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 51 235 48
95 % 51 235 66
90 % 51 235 70
70 % 51 235 82
50 % 53 309 84
40 % 53 309 103
30 % 53 309 116
Entity #4 | Chains: D
RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 264 42
95 % 57 272 44
90 % 57 272 50
70 % 57 272 60
50 % 69 416 29
40 % 69 421 41
30 % 69 421 58
Entity #5 | Chains: E
RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 271 34
95 % 57 271 48
90 % 57 271 53
70 % 57 271 63
50 % 70 417 30
40 % 70 417 42
30 % 70 419 60
Entity #6 | Chains: F
RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 58 276 27
95 % 64 282 37
90 % 64 282 42
70 % 64 282 51
50 % 64 282 88
40 % 64 282 110
30 % 76 355 95
Entity #7 | Chains: G
RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 58 275 28
95 % 58 276 41
90 % 58 276 46
70 % 58 276 56
50 % 69 356 66
40 % 69 361 84
30 % 69 361 96
Entity #8 | Chains: H
RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 58 271 32
95 % 58 271 45
90 % 58 275 47
70 % 58 275 57
50 % 72 421 27
40 % 73 427 37
30 % 80 542 30
Entity #9 | Chains: I
RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 53 180 69
95 % 57 271 50
90 % 57 271 55
70 % 57 271 65
50 % 69 411 35
40 % 69 411 48
30 % 75 526 34

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4Y4O 49 1r, 2r 30S ribosomal protein S18 274
2 5J8B 51 r 30S ribosomal protein S18 274
3 4W2F 18 AR, CR 30S Ribosomal Protein S18 274
4 4Y4P 49 1r, 2r 30S ribosomal protein S18 274
5 5J4B 49 1r, 2r 30S ribosomal protein S18 274
6 4W2G 18 AR, CR 30S Ribosomal Protein S18 274
7 5W4K 49 1r, 2r 30S ribosomal protein S18 274
8 4LFB 18 R ribosomal protein S18 274
9 1VY4 18 AR, CR 30S ribosomal protein S18 274
10 4W2I 18 AR, CR 30S Ribosomal Protein S18 274
11 1VY5 18 AR, CR 30S ribosomal protein S18 274
12 5HCQ 49 1r, 2r 30S ribosomal protein S18 274
13 4WQF 51 BR, DR 30S ribosomal protein S18 274
14 4W2H 18 AR, CR 30S Ribosomal Protein S18 274
15 4WPO 51 BR, DR 30S ribosomal protein S18 274
16 4V8I 18 AR, CR 30S Ribosomal Protein S18 274
17 4JI1 18 R RIBOSOMAL PROTEIN S18 274
18 4Z3S 49 1r, 2r 30S ribosomal protein S18 274
19 5DOY 49 1r, 2r 30S Ribosomal Protein S18 274
20 5HD1 49 1r, 2r 30S ribosomal protein S18 274
21 4DR6 18 R 30S ribosomal protein S18 274
22 4LF7 18 R ribosomal protein S18 274
23 4LF8 18 R ribosomal protein S18 274
24 4WSD 18 9A, 9I 30S ribosomal protein S18 274
25 4WQU 51 BR, DR 30S ribosomal protein S18 274
26 5E81 18 9A, 9I 30S ribosomal protein S18 274
27 4Z8C 49 1r, 2r 30S ribosomal protein S18 274
28 5HCR 49 1r, 2r 30S ribosomal protein S18 274
29 2UUB 18 R 30S RIBOSOMAL PROTEIN S18 274
30 4DV6 18 R ribosomal protein S18 274
31 5IBB 18 9A, 9I 30S ribosomal protein S18 274
32 4DR5 18 R 30S ribosomal protein S18 274
33 5J4C 49 1r, 2r 30S ribosomal protein S18 274
34 4DR2 18 R 30S ribosomal protein S18 274
35 4WRO 22 9I 30S ribosomal protein S18 274
36 4WQ1 18 9A, 9I 30S ribosomal protein S18 274
37 4LF9 18 R ribosomal protein S18 274
38 4WQY 51 BR, DR 30S ribosomal protein S18 274
39 4DUY 18 R ribosomal protein S18 274
40 4DV7 18 R ribosomal protein S18 274
41 4WRA 18 9A, 9I 30S ribosomal protein S18 274
42 5IB7 18 9A, 9I 30S ribosomal protein S18 274
43 5HCP 49 1r, 2r 30S ribosomal protein S18 274
44 4V8D 18 AU, CU 30S RIBOSOMAL PROTEIN S18 274
45 4DR3 18 R 30S ribosomal protein S18 274
46 4V90 18 AR 30S RIBOSOMAL PROTEIN S18 274
47 4JI3 18 R RIBOSOMAL PROTEIN S18 274
48 4WQR 18 9A, 9I 30S ribosomal protein S18 274
49 4JI6 18 R RIBOSOMAL PROTEIN S18 274
50 4JI8 18 R RIBOSOMAL PROTEIN S18 274
51 2UXC 18 R RIBOSOMAL PROTEIN S18 274
52 5IB8 18 9A, 9I 30S ribosomal protein S18 274
53 4V9R 18 AR, CR 30S Ribosomal Protein S18 274
54 5EL6 18 9A, 9I 30S ribosomal protein S18 274
55 5EL7 18 9A, 9I 30S ribosomal protein S18 274
56 5VP2 49 1r, 2r 30S ribosomal protein S18 274
57 4LF4 18 R ribosomal protein S18 274
58 5DFE 52 QR, XR 30S ribosomal protein S18 274
59 4LF6 18 R ribosomal protein S18 274
60 4JI7 18 R RIBOSOMAL PROTEIN S18 274
61 4WU1 18 9A, 9I 30S ribosomal protein S18 274
62 5EL4 18 9A, 9I 30S ribosomal protein S18 274
63 4WR6 18 9A, 9I 30S ribosomal protein S18 274
64 4V8B 18 AU, CU 30S RIBOSOMAL PROTEIN S18 274
65 5HAU 51 1r, 2r 30S ribosomal protein S18 274
66 2UUA 18 R 30S RIBOSOMAL PROTEIN S18 274
67 4V87 48 BU, CU 30S RIBOSOMAL PROTEIN S18 274
68 4V95 18 AR, CR 30S Ribosomal Protein S18 274
69 1VY7 18 AR, CR 30S ribosomal protein S18 274
70 5E7K 18 9A, 9I 30S ribosomal protein S18 274
71 5EL5 18 9A, 9I 30S ribosomal protein S18 274
72 4LNT 18 QR, XR 30S ribosomal protein S18 274
73 4DR1 18 R 30S ribosomal protein S18 274
74 4LFA 18 R ribosomal protein S18 274
75 4DV4 18 R ribosomal protein S18 274
76 4YZV 18 QR, XR 30S ribosomal protein S18 274
77 4JI0 18 R ribosomal protein S18 274
78 4V9S 18 AR, CR 30S Ribosomal Protein S18 274
79 4JI2 18 R RIBOSOMAL PROTEIN S18 274
80 4DR7 18 R 30S ribosomal protein S18 274
81 4DUZ 18 R ribosomal protein S18 274
82 4V8G 18 AR, CR 30S Ribosomal Protein S18 274
83 4DV3 18 R ribosomal protein S18 274
84 4DV5 18 R ribosomal protein S18 274
85 2UUC 18 R 30S RIBOSOMAL PROTEIN S18 274
86 4LFC 18 R ribosomal protein S18 274
87 4WZO 18 9A, 9I 30S ribosomal protein S18 274
88 4JI4 18 R RIBOSOMAL PROTEIN S18 274
89 1VY6 18 AR, CR 30S ribosomal protein S18 274
90 4DV0 18 R ribosomal protein S18 274
91 4V9B 18 AU, CU 30S RIBOSOMAL PROTEIN S18 274
92 4V6F 48 BU, CU 30S ribosomal protein S18 274
93 4V8F 48 BU, CU 30S RIBOSOMAL PROTEIN S18 274
94 4DV2 18 R ribosomal protein S18 274
95 4DV1 18 R ribosomal protein S18 274
96 4V8H 18 AR, CR 30S Ribosomal Protein S18 274
97 4JI5 18 R RIBOSOMAL PROTEIN S18 274
98 4W2E 51 r 30S ribosomal protein S18 274
99 4V8C 48 CU, DU 30S RIBOSOMAL PROTEIN S18 274
100 5BR8 18 R 30S ribosomal protein S18 274
101 4LF5 18 R ribosomal protein S18 274
102 5J4D 52 AB, FD 30S ribosomal protein S18 274
103 4V9A 18 AU, CU 30S RIBOSOMAL PROTEIN S18 274
104 4V5J 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
105 4V7Y 18 AR, CR 30S ribosomal protein S18 274
106 4V8E 48 BU, DU 30S RIBOSOMAL PROTEIN S18 274
107 5J30 49 QR, XR 30S ribosomal protein S18 274
108 4DR4 18 R 30S ribosomal protein S18 274
109 4WZD 18 9A, 9I 30S ribosomal protein S18 274
110 2UU9 18 R 30S RIBOSOMAL PROTEIN S18 274
111 4V8Q 52 BR 30S RIBOSOMAL PROTEIN S18 274
112 4W4G 18 QR, XR 30S ribosomal protein S18 274
113 4NXM 18 R ribosomal protein S18 274
114 4V5L 18 AR 30S RIBOSOMAL PROTEIN S18 274
115 4YPB 18 QR, XR 30S ribosomal protein S18 274
116 4V7X 18 AR, CR 30S ribosomal protein S18 274
117 4V7W 18 AR, CR 30S ribosomal protein S18 274
118 4WT1 18 9A, 9I 30S ribosomal protein S18 274
119 5DOX 49 1r, 2r 30S ribosomal protein S18 274
120 4NXN 18 R ribosomal protein S18 274
121 4LT8 18 QR, XR 30S ribosomal protein S18 274
122 4V51 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
123 4V7L 18 AR, CR 30S ribosomal protein S18 274
124 4V5R 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
125 4V8A 48 CR, DR 30S ribosomal protein S18 274
126 4V5K 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
127 4V5Q 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
128 4V7J 17 Ar, Br 30S ribosomal protein S18 274
129 5J3C 49 QR, XR 30S ribosomal protein S18 274
130 4V5C 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
131 4V5E 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
132 4L47 18 QR, XR 30S ribosomal protein S18 274
133 4V5P 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
134 4ZSN 18 QR, XR 30S ribosomal protein S18 274
135 4V5D 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
136 4V7Z 18 AR, CR 30S ribosomal protein S18 274
137 4V8X 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
138 4V5S 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
139 2UXD 18 R RIBOSOMAL PROTEIN S18 274
140 4V6G 18 AU, CU 30S RIBOSOMAL PROTEIN S18 274
141 4V8N 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
142 4V97 18 AR, CR 30S ribosomal protein S18 274
143 4V7M 18 AR, CR 30S ribosomal protein S18 274
144 4WSM 18 9A, 9I 30S ribosomal protein S18 274
145 4TUD 18 QR, XR 30S ribosomal protein S18 274
146 4V6A 18 AR, CR 30S ribosomal protein S18 274
147 4TUE 18 QR, XR 30S ribosomal protein S18 274
148 4TUA 18 QR, XR 30S ribosomal protein S18 274
149 4V7K 17 Ar, Br 30S ribosomal protein S18 274
150 4YY3 18 R 30S ribosomal protein S18 274
151 4TUC 18 QR, XR 30S ribosomal protein S18 274
152 4TUB 18 QR, XR 30S ribosomal protein S18 274
153 4P70 18 QR, XR 30S ribosomal protein S18 274
154 4V8U 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
155 4LSK 18 QR, XR 30S ribosomal protein S18 274
156 4P6F 18 QR, XR 30S ribosomal protein S18 274
157 4V67 20 AR, CR 30S ribosomal protein S18 274
158 4V5F 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
159 1VVJ 18 QR, XR 30S ribosomal protein S18 274
160 4LFZ 18 QR, XR 30S ribosomal protein S18 274
161 5CZP 49 QR, XR 30S ribosomal protein S18 274
162 4OX9 18 R 30S ribosomal protein S18 274
163 2UXB 18 R RIBOSOMAL PROTEIN S18 274
164 4V5A 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
165 4V63 20 AR, CR 30S ribosomal protein S18 274
166 4L71 18 QR, XR 30S ribosomal protein S18 274
167 4KVB 17 R 30S ribosomal protein S18 274
168 4V8J 18 AR, CR 30S ribosomal protein S18 274
169 5D8B 45 OC, SA 30S ribosomal protein S18 274
170 4LEL 18 QR, XR 30S ribosomal protein S18 274
171 4V5G 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
172 4V8O 18 AR 30S RIBOSOMAL PROTEIN S18 274
173 4V4J 51 s 30S ribosomal protein S18 274
174 4V4I 51 s 30S ribosomal protein S18 274
175 5LMN 18 R 30S ribosomal protein S18 Q5SLQ0 274
176 5LMO 18 R 30S ribosomal protein S18 274
177 5LMP 18 R 30S ribosomal protein S18 274
178 5LMQ 18 R 30S ribosomal protein S18 274
179 5LMR 18 R 30S ribosomal protein S18 274
180 5LMS 18 R 30S ribosomal protein S18 274
181 5LMT 18 R 30S ribosomal protein S18 274
182 5LMU 18 R 30S ribosomal protein S18 274
183 5LMV 18 R 30S ribosomal protein S18 274
184 4V5N 18 AR 30S RIBOSOMAL PROTEIN S18 274
185 4V5M 18 AR 30S RIBOSOMAL PROTEIN S18 274