Sequence Similarity Clusters for the Entities in PDB 4JI8

Entity #1 | Chains: A
16S rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 252 35
95 % 56 253 47
90 % 56 253 52
70 % 56 253 62
50 % 68 348 28
40 % 68 348 38
30 % 73 418 37
Entity #11 | Chains: K
RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 254 33
95 % 56 254 43
90 % 56 254 48
70 % 56 254 57
50 % 62 342 36
40 % 69 419 22
30 % 69 420 35
Entity #12 | Chains: L
RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 20045
95 % 56 261 35
90 % 56 261 39
70 % 62 353 23
50 % 62 354 27
40 % 62 354 37
30 % 62 354 56
Entity #13 | Chains: M
RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 255 30
95 % 56 255 41
90 % 56 255 46
70 % 56 255 55
50 % 62 347 33
40 % 62 347 45
30 % 67 419 42
Entity #14 | Chains: N
RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 253 34
95 % 56 253 48
90 % 56 253 53
70 % 56 254 60
50 % 56 254 86
40 % 56 254 106
30 % 56 254 118
Entity #15 | Chains: O
RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 257 27
95 % 58 262 33
90 % 58 262 37
70 % 58 262 48
50 % 67 355 26
40 % 67 356 36
30 % 67 356 55
Entity #16 | Chains: P
RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 249 36
95 % 56 254 45
90 % 56 254 50
70 % 56 254 59
50 % 56 254 85
40 % 56 255 105
30 % 62 345 62
Entity #17 | Chains: Q
RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 48 161 56
95 % 56 248 50
90 % 56 252 54
70 % 56 252 63
50 % 56 252 88
40 % 56 252 108
30 % 56 252 120
Entity #18 | Chains: R
RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 49 168 55
95 % 50 219 62
90 % 50 219 66
70 % 50 219 77
50 % 50 219 107
40 % 50 219 128
30 % 50 219 142
Entity #19 | Chains: S
RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 257 26
95 % 57 257 37
90 % 57 257 43
70 % 57 257 52
50 % 63 345 31
40 % 63 345 42
30 % 63 345 59
Entity #2 | Chains: B
RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 254 28
95 % 56 255 38
90 % 56 255 44
70 % 56 255 53
50 % 62 341 35
40 % 62 342 46
30 % 62 342 61
Entity #20 | Chains: T
RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 202 47
95 % 56 253 46
90 % 56 253 51
70 % 56 253 61
50 % 56 253 87
40 % 56 253 107
30 % 56 253 119
Entity #21 | Chains: U
RIBOSOMAL PROTEIN THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 244 38
95 % 56 244 54
90 % 56 244 57
70 % 56 244 67
50 % 56 244 91
40 % 56 244 113
30 % 56 244 126
Entity #3 | Chains: C
RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 50 218 43
95 % 50 218 63
90 % 50 218 67
70 % 50 218 78
50 % 52 269 77
40 % 52 269 97
30 % 52 269 112
Entity #4 | Chains: D
RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 247 37
95 % 56 255 39
90 % 56 255 45
70 % 56 255 54
50 % 62 342 34
40 % 62 343 44
30 % 62 343 60
Entity #5 | Chains: E
RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 254 32
95 % 56 254 42
90 % 56 254 47
70 % 56 254 56
50 % 63 346 30
40 % 63 346 41
30 % 63 348 57
Entity #6 | Chains: F
RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 259 24
95 % 63 265 21
90 % 63 265 24
70 % 63 265 32
50 % 63 265 79
40 % 63 265 100
30 % 69 304 78
Entity #7 | Chains: G
RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 258 25
95 % 57 259 36
90 % 57 259 41
70 % 57 259 50
50 % 62 304 51
40 % 62 305 63
30 % 62 305 86
Entity #8 | Chains: H
RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 254 29
95 % 57 254 40
90 % 57 258 42
70 % 57 258 51
50 % 65 348 29
40 % 66 350 39
30 % 72 423 33
Entity #9 | Chains: I
RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 52 163 72
95 % 56 254 44
90 % 56 254 49
70 % 56 254 58
50 % 62 342 37
40 % 62 342 47
30 % 67 414 44

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4Y4O 49 1r, 2r 30S ribosomal protein S18 274
2 5J8B 51 r 30S ribosomal protein S18 274
3 4W2F 18 AR, CR 30S Ribosomal Protein S18 274
4 4Y4P 49 1r, 2r 30S ribosomal protein S18 274
5 5J4B 49 1r, 2r 30S ribosomal protein S18 274
6 4W2G 18 AR, CR 30S Ribosomal Protein S18 274
7 4LFB 18 R ribosomal protein S18 274
8 1VY4 18 AR, CR 30S ribosomal protein S18 274
9 4W2I 18 AR, CR 30S Ribosomal Protein S18 274
10 1VY5 18 AR, CR 30S ribosomal protein S18 274
11 5HCQ 49 1r, 2r 30S ribosomal protein S18 274
12 4WQF 51 BR, DR 30S ribosomal protein S18 274
13 4W2H 18 AR, CR 30S Ribosomal Protein S18 274
14 4WPO 51 BR, DR 30S ribosomal protein S18 274
15 4V8I 18 AR, CR 30S Ribosomal Protein S18 274
16 4JI1 18 R RIBOSOMAL PROTEIN S18 274
17 4Z3S 49 1r, 2r 30S ribosomal protein S18 274
18 5DOY 49 1r, 2r 30S Ribosomal Protein S18 274
19 5HD1 49 1r, 2r 30S ribosomal protein S18 274
20 4DR6 18 R 30S ribosomal protein S18 274
21 4LF7 18 R ribosomal protein S18 274
22 4LF8 18 R ribosomal protein S18 274
23 4WSD 18 9A, 9I 30S ribosomal protein S18 274
24 4WQU 51 BR, DR 30S ribosomal protein S18 274
25 5E81 18 9A, 9I 30S ribosomal protein S18 274
26 4Z8C 49 1r, 2r 30S ribosomal protein S18 274
27 5HCR 49 1r, 2r 30S ribosomal protein S18 274
28 2UUB 18 R 30S RIBOSOMAL PROTEIN S18 274
29 4DV6 18 R ribosomal protein S18 274
30 5IBB 18 9A, 9I 30S ribosomal protein S18 274
31 4DR5 18 R 30S ribosomal protein S18 274
32 5J4C 49 1r, 2r 30S ribosomal protein S18 274
33 4DR2 18 R 30S ribosomal protein S18 274
34 4WRO 22 9I 30S ribosomal protein S18 274
35 4WQ1 18 9A, 9I 30S ribosomal protein S18 274
36 4LF9 18 R ribosomal protein S18 274
37 4WQY 51 BR, DR 30S ribosomal protein S18 274
38 4DUY 18 R ribosomal protein S18 274
39 4DV7 18 R ribosomal protein S18 274
40 4WRA 18 9A, 9I 30S ribosomal protein S18 274
41 5IB7 18 9A, 9I 30S ribosomal protein S18 274
42 5HCP 49 1r, 2r 30S ribosomal protein S18 274
43 4V8D 18 AU, CU 30S RIBOSOMAL PROTEIN S18 274
44 4DR3 18 R 30S ribosomal protein S18 274
45 4V90 18 AR 30S RIBOSOMAL PROTEIN S18 274
46 4JI3 18 R RIBOSOMAL PROTEIN S18 274
47 4WQR 18 9A, 9I 30S ribosomal protein S18 274
48 4JI6 18 R RIBOSOMAL PROTEIN S18 274
49 4JI8 18 R RIBOSOMAL PROTEIN S18 274
50 2UXC 18 R RIBOSOMAL PROTEIN S18 274
51 5IB8 18 9A, 9I 30S ribosomal protein S18 274
52 4V9R 18 AR, CR 30S Ribosomal Protein S18 274
53 5EL6 18 9A, 9I 30S ribosomal protein S18 274
54 5EL7 18 9A, 9I 30S ribosomal protein S18 274
55 4LF4 18 R ribosomal protein S18 274
56 4LF6 18 R ribosomal protein S18 274
57 4JI7 18 R RIBOSOMAL PROTEIN S18 274
58 4WU1 18 9A, 9I 30S ribosomal protein S18 274
59 5EL4 18 9A, 9I 30S ribosomal protein S18 274
60 4WR6 18 9A, 9I 30S ribosomal protein S18 274
61 4V8B 18 AU, CU 30S RIBOSOMAL PROTEIN S18 274
62 5HAU 51 1r, 2r 30S ribosomal protein S18 274
63 2UUA 18 R 30S RIBOSOMAL PROTEIN S18 274
64 4V87 48 BU, CU 30S RIBOSOMAL PROTEIN S18 274
65 4V95 18 AR, CR 30S Ribosomal Protein S18 274
66 1VY7 18 AR, CR 30S ribosomal protein S18 274
67 5E7K 18 9A, 9I 30S ribosomal protein S18 274
68 5EL5 18 9A, 9I 30S ribosomal protein S18 274
69 4LNT 18 QR, XR 30S ribosomal protein S18 274
70 4DR1 18 R 30S ribosomal protein S18 274
71 4LFA 18 R ribosomal protein S18 274
72 4DV4 18 R ribosomal protein S18 274
73 4YZV 18 QR, XR 30S ribosomal protein S18 274
74 4JI0 18 R ribosomal protein S18 274
75 4V9S 18 AR, CR 30S Ribosomal Protein S18 274
76 4JI2 18 R RIBOSOMAL PROTEIN S18 274
77 4DR7 18 R 30S ribosomal protein S18 274
78 4DUZ 18 R ribosomal protein S18 274
79 4V8G 18 AR, CR 30S Ribosomal Protein S18 274
80 4DV3 18 R ribosomal protein S18 274
81 4DV5 18 R ribosomal protein S18 274
82 2UUC 18 R 30S RIBOSOMAL PROTEIN S18 274
83 4LFC 18 R ribosomal protein S18 274
84 4WZO 18 9A, 9I 30S ribosomal protein S18 274
85 4JI4 18 R RIBOSOMAL PROTEIN S18 274
86 1VY6 18 AR, CR 30S ribosomal protein S18 274
87 4DV0 18 R ribosomal protein S18 274
88 4V9B 18 AU, CU 30S RIBOSOMAL PROTEIN S18 274
89 4V6F 48 BU, CU 30S ribosomal protein S18 274
90 4V8F 48 BU, CU 30S RIBOSOMAL PROTEIN S18 274
91 4DV2 18 R ribosomal protein S18 274
92 4DV1 18 R ribosomal protein S18 274
93 4V8H 18 AR, CR 30S Ribosomal Protein S18 274
94 4JI5 18 R RIBOSOMAL PROTEIN S18 274
95 4W2E 51 r 30S ribosomal protein S18 274
96 4V8C 48 CU, DU 30S RIBOSOMAL PROTEIN S18 274
97 5BR8 18 R 30S ribosomal protein S18 274
98 4LF5 18 R ribosomal protein S18 274
99 5J4D 52 AB, FD 30S ribosomal protein S18 274
100 4V9A 18 AU, CU 30S RIBOSOMAL PROTEIN S18 274
101 4V5J 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
102 4V7Y 18 AR, CR 30S ribosomal protein S18 274
103 4V8E 48 BU, DU 30S RIBOSOMAL PROTEIN S18 274
104 4DR4 18 R 30S ribosomal protein S18 274
105 4WZD 18 9A, 9I 30S ribosomal protein S18 274
106 2UU9 18 R 30S RIBOSOMAL PROTEIN S18 274
107 4V8Q 52 BR 30S RIBOSOMAL PROTEIN S18 274
108 4W4G 18 QR, XR 30S ribosomal protein S18 274
109 4NXM 18 R ribosomal protein S18 274
110 4V5L 18 AR 30S RIBOSOMAL PROTEIN S18 274
111 4YPB 18 QR, XR 30S ribosomal protein S18 274
112 4V7X 18 AR, CR 30S ribosomal protein S18 274
113 4V7W 18 AR, CR 30S ribosomal protein S18 274
114 4WT1 18 9A, 9I 30S ribosomal protein S18 274
115 5DOX 49 1r, 2r 30S ribosomal protein S18 274
116 4NXN 18 R ribosomal protein S18 274
117 4LT8 18 QR, XR 30S ribosomal protein S18 274
118 4V51 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
119 4V7L 18 AR, CR 30S ribosomal protein S18 274
120 4V5R 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
121 4V8A 48 CR, DR 30S ribosomal protein S18 274
122 4V5K 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
123 4V5Q 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
124 4V7J 17 Ar, Br 30S ribosomal protein S18 274
125 4V5C 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
126 4V5E 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
127 4L47 18 QR, XR 30S ribosomal protein S18 274
128 4V5P 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
129 4V5D 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
130 4V7Z 18 AR, CR 30S ribosomal protein S18 274
131 4V8X 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
132 4V5S 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
133 2UXD 18 R RIBOSOMAL PROTEIN S18 274
134 4V6G 18 AU, CU 30S RIBOSOMAL PROTEIN S18 274
135 4V8N 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
136 4V97 18 AR, CR 30S ribosomal protein S18 274
137 4V7M 18 AR, CR 30S ribosomal protein S18 274
138 4WSM 18 9A, 9I 30S ribosomal protein S18 274
139 4TUD 18 QR, XR 30S ribosomal protein S18 274
140 4V6A 18 AR, CR 30S ribosomal protein S18 274
141 4TUE 18 QR, XR 30S ribosomal protein S18 274
142 4TUA 18 QR, XR 30S ribosomal protein S18 274
143 4V7K 17 Ar, Br 30S ribosomal protein S18 274
144 4TUC 18 QR, XR 30S ribosomal protein S18 274
145 4TUB 18 QR, XR 30S ribosomal protein S18 274
146 4P70 18 QR, XR 30S ribosomal protein S18 274
147 4V8U 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
148 4LSK 18 QR, XR 30S ribosomal protein S18 274
149 4P6F 18 QR, XR 30S ribosomal protein S18 274
150 4V67 20 AR, CR 30S ribosomal protein S18 274
151 4V5F 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
152 1VVJ 18 QR, XR 30S ribosomal protein S18 274
153 4LFZ 18 QR, XR 30S ribosomal protein S18 274
154 4OX9 18 R 30S ribosomal protein S18 274
155 2UXB 18 R RIBOSOMAL PROTEIN S18 274
156 4V5A 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
157 4V63 20 AR, CR 30S ribosomal protein S18 274
158 4L71 18 QR, XR 30S ribosomal protein S18 274
159 4KVB 17 R 30S ribosomal protein S18 274
160 4V8J 18 AR, CR 30S ribosomal protein S18 274
161 5D8B 45 OC, SA 30S ribosomal protein S18 274
162 4LEL 18 QR, XR 30S ribosomal protein S18 274
163 4V5G 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
164 4V8O 18 AR 30S RIBOSOMAL PROTEIN S18 274
165 4V4J 51 s 30S ribosomal protein S18 274
166 4V4I 51 s 30S ribosomal protein S18 274
167 4V5N 18 AR 30S RIBOSOMAL PROTEIN S18 274
168 4V5M 18 AR 30S RIBOSOMAL PROTEIN S18 274