Sequence Similarity Clusters for the Entities in PDB 4JI8

Entity #1 | Chains: A
16S rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 60 282 38
95 % 60 283 51 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.1
PDBFlex
90 % 60 283 56
70 % 60 283 67
50 % 78 446 27
40 % 78 446 40
30 % 84 560 34
Entity #11 | Chains: K
RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 60 284 35
95 % 60 284 47 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.7
PDBFlex
90 % 60 284 52
70 % 60 284 62
50 % 72 440 34
40 % 80 572 19
30 % 80 572 33
Entity #12 | Chains: L
RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 23656
95 % 60 291 37 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 60 291 43
70 % 72 444 18
50 % 72 457 24
40 % 72 457 37
30 % 72 457 57
Entity #13 | Chains: M
RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 60 285 32
95 % 60 285 44 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.7
PDBFlex
90 % 60 285 49
70 % 60 285 59
50 % 72 444 33
40 % 72 444 45
30 % 78 561 36
Entity #14 | Chains: N
RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 60 283 36
95 % 60 283 52 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 60 283 57
70 % 60 296 50
50 % 60 296 90
40 % 60 296 112
30 % 60 296 124
Entity #15 | Chains: O
RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 60 287 29
95 % 62 292 36 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 62 292 41
70 % 62 292 51
50 % 77 453 26
40 % 77 458 36
30 % 77 458 55
Entity #16 | Chains: P
RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 60 279 39
95 % 60 284 49
90 % 60 284 54
70 % 60 284 64
50 % 60 294 91
40 % 60 294 114
30 % 72 437 64
Entity #17 | Chains: Q
RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 52 187 58
95 % 60 278 53 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.6
PDBFlex
90 % 60 282 58
70 % 60 282 68
50 % 60 282 96
40 % 60 282 119
30 % 60 282 128
Entity #18 | Chains: R
RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 52 190 61
95 % 53 241 66 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 0.8
PDBFlex
90 % 53 241 69
70 % 53 241 84
50 % 53 241 114
40 % 53 241 139
30 % 53 241 146
Entity #19 | Chains: S
RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 61 287 28
95 % 61 287 39 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 0.9
PDBFlex
90 % 61 287 46
70 % 61 287 55
50 % 73 446 29
40 % 73 449 41
30 % 73 449 59
Entity #2 | Chains: B
RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 60 284 30
95 % 60 285 41 Flexibility: Low
Max RMSD: 9.2, Avg RMSD: 1.5
PDBFlex
90 % 60 285 47
70 % 60 285 56
50 % 72 433 36
40 % 72 438 46
30 % 72 438 62
Entity #20 | Chains: T
RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 59 231 50
95 % 60 283 50 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.7
PDBFlex
90 % 60 283 55
70 % 60 283 66
50 % 60 283 95
40 % 60 283 118
30 % 60 283 127
Entity #21 | Chains: U
RIBOSOMAL PROTEIN THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 59 272 43
95 % 59 272 58 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.5
PDBFlex
90 % 59 272 63
70 % 59 272 73
50 % 59 272 99
40 % 59 272 124
30 % 59 272 131
Entity #3 | Chains: C
RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 53 240 46
95 % 53 240 67 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 53 240 70
70 % 53 240 85
50 % 55 315 86
40 % 55 315 104
30 % 55 315 118
Entity #4 | Chains: D
RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 60 277 40
95 % 60 285 42 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.5
PDBFlex
90 % 60 285 48
70 % 60 285 57
50 % 72 441 30
40 % 72 446 42
30 % 72 446 60
Entity #5 | Chains: E
RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 60 284 34
95 % 60 284 46 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 0.6
PDBFlex
90 % 60 284 51
70 % 60 284 61
50 % 73 441 32
40 % 73 441 44
30 % 73 443 61
Entity #6 | Chains: F
RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 61 289 26
95 % 67 295 35 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 0.8
PDBFlex
90 % 67 295 39
70 % 67 295 48
50 % 67 295 88
40 % 67 295 110
30 % 79 378 86
Entity #7 | Chains: G
RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 61 288 27
95 % 61 289 38 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 0.8
PDBFlex
90 % 61 289 44
70 % 61 289 53
50 % 72 380 64
40 % 72 385 75
30 % 72 385 90
Entity #8 | Chains: H
RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 61 284 31
95 % 61 284 43 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.4
PDBFlex
90 % 61 288 45
70 % 61 288 54
50 % 75 446 28
40 % 76 452 39
30 % 83 577 32
Entity #9 | Chains: I
RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 56 191 64
95 % 60 284 48 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.8
PDBFlex
90 % 60 284 53
70 % 60 284 63
50 % 72 435 35
40 % 72 435 47
30 % 78 561 35

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4Y4O 49 1r, 2r 30S ribosomal protein S18 274
2 5J8B 51 r 30S ribosomal protein S18 274
3 4W2F 18 AR, CR 30S Ribosomal Protein S18 274
4 4Y4P 49 1r, 2r 30S ribosomal protein S18 274
5 5J4B 49 1r, 2r 30S ribosomal protein S18 274
6 4W2G 18 AR, CR 30S Ribosomal Protein S18 274
7 5W4K 49 1r, 2r 30S ribosomal protein S18 274
8 4LFB 18 R ribosomal protein S18 274
9 1VY4 18 AR, CR 30S ribosomal protein S18 274
10 4W2I 18 AR, CR 30S Ribosomal Protein S18 274
11 1VY5 18 AR, CR 30S ribosomal protein S18 274
12 5HCQ 49 1r, 2r 30S ribosomal protein S18 274
13 4WQF 51 BR, DR 30S ribosomal protein S18 274
14 4W2H 18 AR, CR 30S Ribosomal Protein S18 274
15 4WPO 51 BR, DR 30S ribosomal protein S18 274
16 4V8I 18 AR, CR 30S Ribosomal Protein S18 274
17 4JI1 18 R RIBOSOMAL PROTEIN S18 274
18 4Z3S 49 1r, 2r 30S ribosomal protein S18 274
19 5DOY 49 1r, 2r 30S Ribosomal Protein S18 274
20 5HD1 49 1r, 2r 30S ribosomal protein S18 274
21 4DR6 18 R 30S ribosomal protein S18 274
22 4LF7 18 R ribosomal protein S18 274
23 4LF8 18 R ribosomal protein S18 274
24 5WIS 49 1r, 2r 30S ribosomal protein S18 274
25 4WSD 18 9A, 9I 30S ribosomal protein S18 274
26 4WQU 51 BR, DR 30S ribosomal protein S18 274
27 5WIT 49 1r, 2r 30S ribosomal protein S18 274
28 5E81 18 9A, 9I 30S ribosomal protein S18 274
29 4Z8C 49 1r, 2r 30S ribosomal protein S18 274
30 5HCR 49 1r, 2r 30S ribosomal protein S18 274
31 2UUB 18 R 30S RIBOSOMAL PROTEIN S18 274
32 4DV6 18 R ribosomal protein S18 274
33 5IBB 18 9A, 9I 30S ribosomal protein S18 274
34 4DR5 18 R 30S ribosomal protein S18 274
35 5J4C 49 1r, 2r 30S ribosomal protein S18 274
36 4DR2 18 R 30S ribosomal protein S18 274
37 4WRO 22 9I 30S ribosomal protein S18 274
38 4WQ1 18 9A, 9I 30S ribosomal protein S18 274
39 4LF9 18 R ribosomal protein S18 274
40 4WQY 51 BR, DR 30S ribosomal protein S18 274
41 4DUY 18 R ribosomal protein S18 274
42 4DV7 18 R ribosomal protein S18 274
43 4WRA 18 9A, 9I 30S ribosomal protein S18 274
44 5IB7 18 9A, 9I 30S ribosomal protein S18 274
45 5HCP 49 1r, 2r 30S ribosomal protein S18 274
46 4V8D 18 AU, CU 30S RIBOSOMAL PROTEIN S18 274
47 4DR3 18 R 30S ribosomal protein S18 274
48 4V90 18 AR 30S RIBOSOMAL PROTEIN S18 274
49 4JI3 18 R RIBOSOMAL PROTEIN S18 274
50 4WQR 18 9A, 9I 30S ribosomal protein S18 274
51 4JI6 18 R RIBOSOMAL PROTEIN S18 274
52 4JI8 18 R RIBOSOMAL PROTEIN S18 274
53 2UXC 18 R RIBOSOMAL PROTEIN S18 274
54 5IB8 18 9A, 9I 30S ribosomal protein S18 274
55 4V9R 18 AR, CR 30S Ribosomal Protein S18 274
56 5EL6 18 9A, 9I 30S ribosomal protein S18 274
57 5EL7 18 9A, 9I 30S ribosomal protein S18 274
58 5VP2 49 1r, 2r 30S ribosomal protein S18 274
59 4LF4 18 R ribosomal protein S18 274
60 5DFE 52 QR, XR 30S ribosomal protein S18 274
61 5NDK 19 9A, 9I 30S ribosomal protein S18 274
62 4LF6 18 R ribosomal protein S18 274
63 4JI7 18 R RIBOSOMAL PROTEIN S18 274
64 4WU1 18 9A, 9I 30S ribosomal protein S18 274
65 5EL4 18 9A, 9I 30S ribosomal protein S18 274
66 4WR6 18 9A, 9I 30S ribosomal protein S18 274
67 4V8B 18 AU, CU 30S RIBOSOMAL PROTEIN S18 274
68 5HAU 51 1r, 2r 30S ribosomal protein S18 274
69 2UUA 18 R 30S RIBOSOMAL PROTEIN S18 274
70 4V87 48 BU, CU 30S RIBOSOMAL PROTEIN S18 274
71 4V95 18 AR, CR 30S Ribosomal Protein S18 274
72 1VY7 18 AR, CR 30S ribosomal protein S18 274
73 5E7K 18 9A, 9I 30S ribosomal protein S18 274
74 5EL5 18 9A, 9I 30S ribosomal protein S18 274
75 4LNT 18 QR, XR 30S ribosomal protein S18 274
76 4DR1 18 R 30S ribosomal protein S18 274
77 4LFA 18 R ribosomal protein S18 274
78 4DV4 18 R ribosomal protein S18 274
79 4YZV 18 QR, XR 30S ribosomal protein S18 274
80 4JI0 18 R ribosomal protein S18 274
81 4V9S 18 AR, CR 30S Ribosomal Protein S18 274
82 4JI2 18 R RIBOSOMAL PROTEIN S18 274
83 4DR7 18 R 30S ribosomal protein S18 274
84 4DUZ 18 R ribosomal protein S18 274
85 4V8G 18 AR, CR 30S Ribosomal Protein S18 274
86 4DV3 18 R ribosomal protein S18 274
87 4DV5 18 R ribosomal protein S18 274
88 2UUC 18 R 30S RIBOSOMAL PROTEIN S18 274
89 4LFC 18 R ribosomal protein S18 274
90 4WZO 18 9A, 9I 30S ribosomal protein S18 274
91 4JI4 18 R RIBOSOMAL PROTEIN S18 274
92 1VY6 18 AR, CR 30S ribosomal protein S18 274
93 4DV0 18 R ribosomal protein S18 274
94 4V9B 18 AU, CU 30S RIBOSOMAL PROTEIN S18 274
95 4V6F 48 BU, CU 30S ribosomal protein S18 274
96 4V8F 48 BU, CU 30S RIBOSOMAL PROTEIN S18 274
97 4DV2 18 R ribosomal protein S18 274
98 4DV1 18 R ribosomal protein S18 274
99 4V8H 18 AR, CR 30S Ribosomal Protein S18 274
100 4JI5 18 R RIBOSOMAL PROTEIN S18 274
101 4W2E 51 r 30S ribosomal protein S18 274
102 4V8C 48 CU, DU 30S RIBOSOMAL PROTEIN S18 274
103 5BR8 18 R 30S ribosomal protein S18 274
104 4LF5 18 R ribosomal protein S18 274
105 5J4D 52 AB, FD 30S ribosomal protein S18 274
106 4V9A 18 AU, CU 30S RIBOSOMAL PROTEIN S18 274
107 4V5J 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
108 4V7Y 18 AR, CR 30S ribosomal protein S18 274
109 4V8E 48 BU, DU 30S RIBOSOMAL PROTEIN S18 274
110 5J30 49 QR, XR 30S ribosomal protein S18 274
111 4DR4 18 R 30S ribosomal protein S18 274
112 4WZD 18 9A, 9I 30S ribosomal protein S18 274
113 2UU9 18 R 30S RIBOSOMAL PROTEIN S18 274
114 4V8Q 52 BR 30S RIBOSOMAL PROTEIN S18 274
115 4W4G 18 QR, XR 30S ribosomal protein S18 274
116 4NXM 18 R ribosomal protein S18 274
117 4V5L 18 AR 30S RIBOSOMAL PROTEIN S18 274
118 4YPB 18 QR, XR 30S ribosomal protein S18 274
119 4V7X 18 AR, CR 30S ribosomal protein S18 274
120 4V7W 18 AR, CR 30S ribosomal protein S18 274
121 4WT1 18 9A, 9I 30S ribosomal protein S18 274
122 6C5L 18 AR, CR 30S ribosomal protein S18 274
123 5DOX 49 1r, 2r 30S ribosomal protein S18 274
124 4NXN 18 R ribosomal protein S18 274
125 4LT8 18 QR, XR 30S ribosomal protein S18 274
126 4V51 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
127 4V7L 18 AR, CR 30S ribosomal protein S18 274
128 4V5R 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
129 4V8A 48 CR, DR 30S ribosomal protein S18 274
130 4V5K 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
131 4V5Q 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
132 4V7J 17 Ar, Br 30S ribosomal protein S18 274
133 5J3C 49 QR, XR 30S ribosomal protein S18 274
134 4V5C 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
135 4V5E 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
136 4L47 18 QR, XR 30S ribosomal protein S18 274
137 4V5P 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
138 4ZSN 18 QR, XR 30S ribosomal protein S18 274
139 4V5D 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
140 4V7Z 18 AR, CR 30S ribosomal protein S18 274
141 4V8X 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
142 4V5S 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
143 2UXD 18 R RIBOSOMAL PROTEIN S18 274
144 4V6G 18 AU, CU 30S RIBOSOMAL PROTEIN S18 274
145 4V8N 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
146 4V97 18 AR, CR 30S ribosomal protein S18 274
147 4V7M 18 AR, CR 30S ribosomal protein S18 274
148 4WSM 18 9A, 9I 30S ribosomal protein S18 274
149 4TUD 18 QR, XR 30S ribosomal protein S18 274
150 4V6A 18 AR, CR 30S ribosomal protein S18 274
151 4TUE 18 QR, XR 30S ribosomal protein S18 274
152 4TUA 18 QR, XR 30S ribosomal protein S18 274
153 4V7K 17 Ar, Br 30S ribosomal protein S18 274
154 4YY3 18 R 30S ribosomal protein S18 274
155 4TUC 18 QR, XR 30S ribosomal protein S18 274
156 4TUB 18 QR, XR 30S ribosomal protein S18 274
157 4P70 18 QR, XR 30S ribosomal protein S18 274
158 4V8U 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
159 4LSK 18 QR, XR 30S ribosomal protein S18 274
160 4P6F 18 QR, XR 30S ribosomal protein S18 274
161 4V67 20 AR, CR 30S ribosomal protein S18 274
162 4V5F 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
163 1VVJ 18 QR, XR 30S ribosomal protein S18 274
164 4LFZ 18 QR, XR 30S ribosomal protein S18 274
165 5CZP 49 QR, XR 30S ribosomal protein S18 274
166 4OX9 18 R 30S ribosomal protein S18 274
167 2UXB 18 R RIBOSOMAL PROTEIN S18 274
168 4V5A 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
169 4V63 20 AR, CR 30S ribosomal protein S18 274
170 4L71 18 QR, XR 30S ribosomal protein S18 274
171 4KVB 17 R 30S ribosomal protein S18 274
172 4V8J 18 AR, CR 30S ribosomal protein S18 274
173 5D8B 45 OC, SA 30S ribosomal protein S18 274
174 4LEL 18 QR, XR 30S ribosomal protein S18 274
175 4V5G 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
176 4V8O 18 AR 30S RIBOSOMAL PROTEIN S18 274
177 4V4J 51 s 30S ribosomal protein S18 274
178 4V4I 51 s 30S ribosomal protein S18 274
179 6B4V 52 AB, ED 30S ribosomal protein S18 274
180 5LMN 18 R 30S ribosomal protein S18 Q5SLQ0 274
181 5LMO 18 R 30S ribosomal protein S18 274
182 5LMP 18 R 30S ribosomal protein S18 274
183 5LMQ 18 R 30S ribosomal protein S18 274
184 5LMR 18 R 30S ribosomal protein S18 274
185 5LMS 18 R 30S ribosomal protein S18 274
186 5LMT 18 R 30S ribosomal protein S18 274
187 5LMU 18 R 30S ribosomal protein S18 274
188 5LMV 18 R 30S ribosomal protein S18 274
189 4V5N 18 AR 30S RIBOSOMAL PROTEIN S18 274
190 4V5M 18 AR 30S RIBOSOMAL PROTEIN S18 274