Sequence Similarity Clusters for the Entities in PDB 4JI8

Entity #1 | Chains: A
16S rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 237 25
95 % 47 238 38
90 % 47 238 43
70 % 47 238 53
50 % 59 330 30
40 % 59 330 40
30 % 64 396 41
Entity #11 | Chains: K
RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 239 23
95 % 47 239 34
90 % 47 239 39
70 % 47 239 48
50 % 53 324 38
40 % 60 397 27
30 % 60 398 39
Entity #12 | Chains: L
RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 19451
95 % 47 246 22
90 % 47 246 27
70 % 53 335 23
50 % 53 336 29
40 % 53 336 39
30 % 53 336 56
Entity #13 | Chains: M
RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 240 20
95 % 47 240 32
90 % 47 240 37
70 % 47 240 46
50 % 53 329 35
40 % 53 329 46
30 % 58 397 46
Entity #14 | Chains: N
RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 238 24
95 % 47 238 39
90 % 47 238 44
70 % 47 239 51
50 % 47 239 82
40 % 47 239 108
30 % 47 239 124
Entity #15 | Chains: O
RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 242 16
95 % 49 247 21
90 % 49 247 26
70 % 49 247 37
50 % 58 337 27
40 % 58 338 38
30 % 58 338 54
Entity #16 | Chains: P
RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 234 26
95 % 47 239 36
90 % 47 239 41
70 % 47 239 50
50 % 47 239 81
40 % 47 240 106
30 % 53 327 65
Entity #17 | Chains: Q
RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 39 149 57
95 % 47 233 40
90 % 47 237 45
70 % 47 237 54
50 % 47 237 87
40 % 47 237 113
30 % 47 237 128
Entity #18 | Chains: R
RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 156 56
95 % 41 205 63
90 % 41 205 66
70 % 41 205 75
50 % 41 205 109
40 % 41 205 129
30 % 41 205 145
Entity #19 | Chains: S
RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 48 242 15
95 % 48 242 26
90 % 48 242 31
70 % 48 242 42
50 % 54 327 34
40 % 54 327 44
30 % 54 327 60
Entity #2 | Chains: B
RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 239 17
95 % 47 240 27
90 % 47 240 33
70 % 47 240 43
50 % 53 323 37
40 % 53 324 47
30 % 53 324 63
Entity #20 | Chains: T
RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 46 188 48
95 % 47 238 37
90 % 47 238 42
70 % 47 238 52
50 % 47 238 83
40 % 47 238 110
30 % 47 238 126
Entity #21 | Chains: U
RIBOSOMAL PROTEIN THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 229 39
95 % 47 229 54
90 % 47 229 58
70 % 47 229 69
50 % 47 229 97
40 % 47 229 118
30 % 47 229 133
Entity #3 | Chains: C
RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 204 43
95 % 41 204 64
90 % 41 204 67
70 % 41 204 76
50 % 43 252 68
40 % 43 252 93
30 % 43 252 110
Entity #4 | Chains: D
RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 232 27
95 % 47 240 28
90 % 47 240 34
70 % 47 240 44
50 % 53 324 36
40 % 53 325 45
30 % 53 325 62
Entity #5 | Chains: E
RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 239 22
95 % 47 239 33
90 % 47 239 38
70 % 47 239 47
50 % 54 328 33
40 % 54 328 43
30 % 54 330 59
Entity #6 | Chains: F
RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 48 244 13
95 % 54 250 20
90 % 54 250 25
70 % 54 250 35
50 % 54 250 70
40 % 54 250 94
30 % 60 289 80
Entity #7 | Chains: G
RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 48 243 14
95 % 48 244 25
90 % 48 244 29
70 % 48 244 40
50 % 53 289 50
40 % 53 290 62
30 % 53 290 83
Entity #8 | Chains: H
RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 48 239 19
95 % 48 239 31
90 % 48 243 30
70 % 48 243 41
50 % 56 330 31
40 % 57 332 41
30 % 63 401 37
Entity #9 | Chains: I
RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 43 149 70
95 % 47 239 35
90 % 47 239 40
70 % 47 239 49
50 % 53 324 39
40 % 53 324 49
30 % 58 392 47

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4Y4O 49 1r, 2r 30S ribosomal protein S18 274
2 4W2F 18 AR, CR 30S Ribosomal Protein S18 274
3 4Y4P 49 1r, 2r 30S ribosomal protein S18 274
4 4W2G 18 AR, CR 30S Ribosomal Protein S18 274
5 4LFB 18 R ribosomal protein S18 274
6 1VY4 18 AR, CR 30S ribosomal protein S18 274
7 4W2I 18 AR, CR 30S Ribosomal Protein S18 274
8 1VY5 18 AR, CR 30S ribosomal protein S18 274
9 4WQF 51 BR, DR 30S ribosomal protein S18 274
10 4W2H 18 AR, CR 30S Ribosomal Protein S18 274
11 4WPO 51 BR, DR 30S ribosomal protein S18 274
12 4V8I 18 AR, CR 30S Ribosomal Protein S18 274
13 4JI1 18 R RIBOSOMAL PROTEIN S18 274
14 4Z3S 49 1r, 2r 30S ribosomal protein S18 274
15 5DOY 49 1r, 2r 30S Ribosomal Protein S18 274
16 4DR6 18 R 30S ribosomal protein S18 274
17 4LF7 18 R ribosomal protein S18 274
18 4LF8 18 R ribosomal protein S18 274
19 4WSD 18 9A, 9I 30S ribosomal protein S18 274
20 4WQU 51 BR, DR 30S ribosomal protein S18 274
21 5E81 18 9A, 9I 30S ribosomal protein S18 274
22 4Z8C 49 1r, 2r 30S ribosomal protein S18 274
23 2UUB 18 R 30S RIBOSOMAL PROTEIN S18 274
24 4DV6 18 R ribosomal protein S18 274
25 4DR5 18 R 30S ribosomal protein S18 274
26 4DR2 18 R 30S ribosomal protein S18 274
27 4WRO 22 9I 30S ribosomal protein S18 274
28 4WQ1 18 9A, 9I 30S ribosomal protein S18 274
29 4LF9 18 R ribosomal protein S18 274
30 4WQY 51 BR, DR 30S ribosomal protein S18 274
31 4DUY 18 R ribosomal protein S18 274
32 4DV7 18 R ribosomal protein S18 274
33 4WRA 18 9A, 9I 30S ribosomal protein S18 274
34 4V8D 18 AU, CU 30S RIBOSOMAL PROTEIN S18 274
35 4DR3 18 R 30S ribosomal protein S18 274
36 4V90 18 AR 30S RIBOSOMAL PROTEIN S18 274
37 4JI3 18 R RIBOSOMAL PROTEIN S18 274
38 4WQR 18 9A, 9I 30S ribosomal protein S18 274
39 4JI6 18 R RIBOSOMAL PROTEIN S18 274
40 4JI8 18 R RIBOSOMAL PROTEIN S18 274
41 2UXC 18 R RIBOSOMAL PROTEIN S18 274
42 4V9R 18 AR, CR 30S Ribosomal Protein S18 274
43 5EL6 18 9A, 9I 30S ribosomal protein S18 274
44 5EL7 18 9A, 9I 30S ribosomal protein S18 274
45 4LF4 18 R ribosomal protein S18 274
46 4LF6 18 R ribosomal protein S18 274
47 4JI7 18 R RIBOSOMAL PROTEIN S18 274
48 4WU1 18 9A, 9I 30S ribosomal protein S18 274
49 5EL4 18 9A, 9I 30S ribosomal protein S18 274
50 4WR6 18 9A, 9I 30S ribosomal protein S18 274
51 4V8B 18 AU, CU 30S RIBOSOMAL PROTEIN S18 274
52 2UUA 18 R 30S RIBOSOMAL PROTEIN S18 274
53 4V87 48 BU, CU 30S RIBOSOMAL PROTEIN S18 274
54 4V95 18 AR, CR 30S Ribosomal Protein S18 274
55 1VY7 18 AR, CR 30S ribosomal protein S18 274
56 5E7K 18 9A, 9I 30S ribosomal protein S18 274
57 5EL5 18 9A, 9I 30S ribosomal protein S18 274
58 4LNT 18 QR, XR 30S ribosomal protein S18 274
59 4DR1 18 R 30S ribosomal protein S18 274
60 4LFA 18 R ribosomal protein S18 274
61 4DV4 18 R ribosomal protein S18 274
62 4YZV 18 QR, XR 30S ribosomal protein S18 274
63 4JI0 18 R ribosomal protein S18 274
64 4V9S 18 AR, CR 30S Ribosomal Protein S18 274
65 4JI2 18 R RIBOSOMAL PROTEIN S18 274
66 4DR7 18 R 30S ribosomal protein S18 274
67 4DUZ 18 R ribosomal protein S18 274
68 4V8G 18 AR, CR 30S Ribosomal Protein S18 274
69 4DV3 18 R ribosomal protein S18 274
70 4DV5 18 R ribosomal protein S18 274
71 2UUC 18 R 30S RIBOSOMAL PROTEIN S18 274
72 4LFC 18 R ribosomal protein S18 274
73 4WZO 18 9A, 9I 30S ribosomal protein S18 274
74 4JI4 18 R RIBOSOMAL PROTEIN S18 274
75 1VY6 18 AR, CR 30S ribosomal protein S18 274
76 4DV0 18 R ribosomal protein S18 274
77 4V9B 18 AU, CU 30S RIBOSOMAL PROTEIN S18 274
78 4V6F 48 BU, CU 30S ribosomal protein S18 274
79 4V8F 48 BU, CU 30S RIBOSOMAL PROTEIN S18 274
80 4DV2 18 R ribosomal protein S18 274
81 4DV1 18 R ribosomal protein S18 274
82 4V8H 18 AR, CR 30S Ribosomal Protein S18 274
83 4JI5 18 R RIBOSOMAL PROTEIN S18 274
84 4W2E 51 r 30S ribosomal protein S18 274
85 4V8C 48 CU, DU 30S RIBOSOMAL PROTEIN S18 274
86 5BR8 18 R 30S ribosomal protein S18 274
87 4LF5 18 R ribosomal protein S18 274
88 4V9A 18 AU, CU 30S RIBOSOMAL PROTEIN S18 274
89 4V5J 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
90 4V7Y 18 AR, CR 30S ribosomal protein S18 274
91 4V8E 48 BU, DU 30S RIBOSOMAL PROTEIN S18 274
92 4DR4 18 R 30S ribosomal protein S18 274
93 4WZD 18 9A, 9I 30S ribosomal protein S18 274
94 2UU9 18 R 30S RIBOSOMAL PROTEIN S18 274
95 4V8Q 52 BR 30S RIBOSOMAL PROTEIN S18 274
96 4W4G 18 QR, XR 30S ribosomal protein S18 274
97 4NXM 18 R ribosomal protein S18 274
98 4V5L 18 AR 30S RIBOSOMAL PROTEIN S18 274
99 4YPB 18 QR, XR 30S ribosomal protein S18 274
100 4V7X 18 AR, CR 30S ribosomal protein S18 274
101 4V7W 18 AR, CR 30S ribosomal protein S18 274
102 4WT1 18 9A, 9I 30S ribosomal protein S18 274
103 5DOX 49 1r, 2r 30S ribosomal protein S18 274
104 4NXN 18 R ribosomal protein S18 274
105 4LT8 18 QR, XR 30S ribosomal protein S18 274
106 4V51 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
107 4V7L 18 AR, CR 30S ribosomal protein S18 274
108 4V5R 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
109 4V8A 48 CR, DR 30S ribosomal protein S18 274
110 4V5K 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
111 4V5Q 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
112 4V7J 17 Ar, Br 30S ribosomal protein S18 274
113 4V5C 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
114 4V5E 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
115 4L47 18 QR, XR 30S ribosomal protein S18 274
116 4V5P 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
117 4V5D 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
118 4V7Z 18 AR, CR 30S ribosomal protein S18 274
119 4V8X 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
120 4V5S 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
121 2UXD 18 R RIBOSOMAL PROTEIN S18 274
122 4V6G 18 AU, CU 30S RIBOSOMAL PROTEIN S18 274
123 4V8N 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
124 4V97 18 AR, CR 30S ribosomal protein S18 274
125 4V7M 18 AR, CR 30S ribosomal protein S18 274
126 4WSM 18 9A, 9I 30S ribosomal protein S18 274
127 4TUD 18 QR, XR 30S ribosomal protein S18 274
128 4V6A 18 AR, CR 30S ribosomal protein S18 274
129 4TUE 18 QR, XR 30S ribosomal protein S18 274
130 4TUA 18 QR, XR 30S ribosomal protein S18 274
131 4V7K 17 Ar, Br 30S ribosomal protein S18 274
132 4TUC 18 QR, XR 30S ribosomal protein S18 274
133 4TUB 18 QR, XR 30S ribosomal protein S18 274
134 4P70 18 QR, XR 30S ribosomal protein S18 274
135 4V8U 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
136 4LSK 18 QR, XR 30S ribosomal protein S18 274
137 4P6F 18 QR, XR 30S ribosomal protein S18 274
138 4V67 20 AR, CR 30S ribosomal protein S18 274
139 4V5F 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
140 1VVJ 18 QR, XR 30S ribosomal protein S18 274
141 4LFZ 18 QR, XR 30S ribosomal protein S18 274
142 4OX9 18 R 30S ribosomal protein S18 274
143 2UXB 18 R RIBOSOMAL PROTEIN S18 274
144 4V5A 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
145 4V63 20 AR, CR 30S ribosomal protein S18 274
146 4L71 18 QR, XR 30S ribosomal protein S18 274
147 4KVB 17 R 30S ribosomal protein S18 274
148 4V8J 18 AR, CR 30S ribosomal protein S18 274
149 5D8B 45 OC, SA 30S ribosomal protein S18 274
150 4LEL 18 QR, XR 30S ribosomal protein S18 274
151 4V5G 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
152 4V8O 18 AR 30S RIBOSOMAL PROTEIN S18 274
153 4V4J 51 s 30S ribosomal protein S18 274
154 4V4I 51 s 30S ribosomal protein S18 274
155 4V5N 18 AR 30S RIBOSOMAL PROTEIN S18 274
156 4V5M 18 AR 30S RIBOSOMAL PROTEIN S18 274