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Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Sequence Clustering and Redundancy Reduction Results
4JI8
Cluster # 47 Members. Sequence cutoff: 100% Cluster size: 123 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4W2F 18 AR, CR 30S Ribosomal Protein S18 300852  
2 4W2G 18 AR, CR 30S Ribosomal Protein S18 300852  
3 4LFB 18 R ribosomal protein S18 300852  
4 1VY4 18 AR, CR 30S ribosomal protein S18 300852  
5 4W2I 18 AR, CR 30S Ribosomal Protein S18 300852  
6 1VY5 18 AR, CR 30S ribosomal protein S18 300852  
7 4WQF 51 BR, DR 30S ribosomal protein S18 300852  
8 4W2H 18 AR, CR 30S Ribosomal Protein S18 300852  
9 4WPO 51 BR, DR 30S ribosomal protein S18 300852  
10 4V8I 18 AR, CR 30S Ribosomal Protein S18 274  
11 4JI1 18 R RIBOSOMAL PROTEIN S18 300852  
12 4DR6 18 R 30S ribosomal protein S18 300852  
13 4LF7 18 R ribosomal protein S18 300852  
14 4LF8 18 R ribosomal protein S18 300852  
15 4WQU 51 BR, DR 30S ribosomal protein S18 300852  
16 2UUB 18 R 30S RIBOSOMAL PROTEIN S18 300852  
17 4DV6 18 R ribosomal protein S18 300852  
18 4DR5 18 R 30S ribosomal protein S18 300852  
19 4DR2 18 R 30S ribosomal protein S18 300852  
20 4LF9 18 R ribosomal protein S18 300852  
21 4WQY 51 BR, DR 30S ribosomal protein S18 300852  
22 4DUY 18 R ribosomal protein S18 300852  
23 4DV7 18 R ribosomal protein S18 300852  
24 4V8D 18 AU, CU 30S RIBOSOMAL PROTEIN S18 300852  
25 4DR3 18 R 30S ribosomal protein S18 300852  
26 4V90 18 AR 30S RIBOSOMAL PROTEIN S18 300852  
27 4JI3 18 R RIBOSOMAL PROTEIN S18 300852  
28 4JI6 18 R RIBOSOMAL PROTEIN S18 300852  
29 4JI8 18 R RIBOSOMAL PROTEIN S18 300852  
30 2UXC 18 R RIBOSOMAL PROTEIN S18 300852  
31 4V9R 18 AR, CR 30S Ribosomal Protein S18 274  
32 4LF4 18 R ribosomal protein S18 300852  
33 4LF6 18 R ribosomal protein S18 300852  
34 4JI7 18 R RIBOSOMAL PROTEIN S18 300852  
35 4V8B 18 AU, CU 30S RIBOSOMAL PROTEIN S18 300852  
36 2UUA 18 R 30S RIBOSOMAL PROTEIN S18 300852  
37 4V87 48 BU, CU 30S RIBOSOMAL PROTEIN S18 300852  
38 4V95 18 AR, CR 30S Ribosomal Protein S18 274  
39 1VY7 18 AR, CR 30S ribosomal protein S18 300852  
40 4LNT 18 QR, XR 30S ribosomal protein S18 300852  
41 4DR1 18 R 30S ribosomal protein S18 300852  
42 4LFA 18 R ribosomal protein S18 300852  
43 4DV4 18 R ribosomal protein S18 300852  
44 4JI0 18 R ribosomal protein S18 300852  
45 4V9S 18 AR, CR 30S Ribosomal Protein S18 274  
46 4JI2 18 R RIBOSOMAL PROTEIN S18 300852  
47 4DR7 18 R 30S ribosomal protein S18 300852  
48 4DUZ 18 R ribosomal protein S18 300852  
49 4V8G 18 AR, CR 30S Ribosomal Protein S18 300852  
50 4DV3 18 R ribosomal protein S18 300852  
51 4DV5 18 R ribosomal protein S18 300852  
52 2UUC 18 R 30S RIBOSOMAL PROTEIN S18 300852  
53 4LFC 18 R ribosomal protein S18 300852  
54 4JI4 18 R RIBOSOMAL PROTEIN S18 300852  
55 1VY6 18 AR, CR 30S ribosomal protein S18 300852  
56 4DV0 18 R ribosomal protein S18 300852  
57 4V9B 18 AU, CU 30S RIBOSOMAL PROTEIN S18 300852  
58 4V6F 48 BU, CU 30S ribosomal protein S18 300852  
59 4V8F 48 BU, CU 30S RIBOSOMAL PROTEIN S18 300852  
60 4DV2 18 R ribosomal protein S18 300852  
61 4DV1 18 R ribosomal protein S18 300852  
62 4V8H 18 AR, CR 30S Ribosomal Protein S18 300852  
63 4JI5 18 R RIBOSOMAL PROTEIN S18 300852  
64 4W2E 51 r 30S ribosomal protein S18 300852  
65 4V8C 48 CU, DU 30S RIBOSOMAL PROTEIN S18 300852  
66 4LF5 18 R ribosomal protein S18 300852  
67 4V9A 18 AU, CU 30S RIBOSOMAL PROTEIN S18 300852  
68 4V5J 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
69 4V7Y 18 AR, CR 30S ribosomal protein S18 300852  
70 4V8E 48 BU, DU 30S RIBOSOMAL PROTEIN S18 300852  
71 4DR4 18 R 30S ribosomal protein S18 300852  
72 2UU9 18 R 30S RIBOSOMAL PROTEIN S18 300852  
73 4V8Q 52 BR 30S RIBOSOMAL PROTEIN S18 300852  
74 4NXM 18 R ribosomal protein S18 300852  
75 4V5L 18 AR 30S RIBOSOMAL PROTEIN S18 300852  
76 4V7X 18 AR, CR 30S ribosomal protein S18 300852  
77 4V7W 18 AR, CR 30S ribosomal protein S18 300852  
78 4NXN 18 R ribosomal protein S18 300852  
79 4LT8 18 QR, XR 30S ribosomal protein S18 300852  
80 4V51 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
81 4V7L 18 AR, CR 30S ribosomal protein S18 300852  
82 4V5R 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
83 4V8A 48 CR, DR 30S ribosomal protein S18 300852  
84 4V5K 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
85 4V5Q 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
86 4V7J 17 Ar, Br 30S ribosomal protein S18 300852  
87 4V5C 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
88 4V5E 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
89 4L47 18 QR, XR 30S ribosomal protein S18 300852  
90 4V5P 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
91 4V5D 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
92 4V7Z 18 AR, CR 30S ribosomal protein S18 300852  
93 4V8X 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
94 4V5S 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
95 2UXD 18 R RIBOSOMAL PROTEIN S18 300852  
96 4V6G 18 AU, CU 30S RIBOSOMAL PROTEIN S18 300852  
97 4V8N 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
98 4V97 18 AR, CR 30S ribosomal protein S18 300852  
99 4V7M 18 AR, CR 30S ribosomal protein S18 300852  
100 4V6A 18 AR, CR 30S ribosomal protein S18 300852  
101 4V7K 17 Ar, Br 30S ribosomal protein S18 300852  
102 4P70 18 QR, XR 30S ribosomal protein S18 300852  
103 4V8U 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
104 4LSK 18 QR, XR 30S ribosomal protein S18 300852  
105 4P6F 18 QR, XR 30S ribosomal protein S18 300852  
106 4V67 20 AR, CR 30S ribosomal protein S18 274  
107 4V5F 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
108 1VVJ 18 QR, XR 30S ribosomal protein S18 300852  
109 4LFZ 18 QR, XR 30S ribosomal protein S18 300852  
110 4OX9 18 R 30S ribosomal protein S18 300852  
111 2UXB 18 R RIBOSOMAL PROTEIN S18 300852  
112 4V5A 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
113 4V63 20 AR, CR 30S ribosomal protein S18 262724  
114 4L71 18 QR, XR 30S ribosomal protein S18 300852  
115 4KVB 17 R 30S ribosomal protein S18 262724  
116 4V8J 18 AR, CR 30S ribosomal protein S18 300852  
117 4LEL 18 QR, XR 30S ribosomal protein S18 300852  
118 4V5G 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
119 4V8O 18 AR 30S RIBOSOMAL PROTEIN S18 300852  
120 4V4J 51 s 30S ribosomal protein S18 262724  
121 4V4I 51 s 30S ribosomal protein S18 262724  
122 4V5N 18 AR 30S RIBOSOMAL PROTEIN S18 300852  
123 4V5M 18 AR 30S RIBOSOMAL PROTEIN S18 300852  
 
Sequence Clusters for the Sequence Entities in PDB 4JI8
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 193 28
95% 33 194 45
90% 33 194 47
70% 33 194 58
50% 43 275 34
40% 43 275 45
30% 43 280 65
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 195 26
95% 33 195 41
90% 33 195 43
70% 33 195 54
50% 37 269 41
40% 44 322 35
30% 44 322 44
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 17605
95% 33 202 32
90% 33 202 33
70% 37 281 23
50% 37 281 33
40% 37 281 44
30% 37 281 68
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 196 23
95% 33 196 39
90% 33 196 41
70% 33 196 52
50% 37 274 38
40% 37 274 50
30% 42 323 47
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 194 27
95% 33 194 46
90% 33 194 48
70% 33 194 59
50% 33 194 92
40% 33 194 115
30% 33 194 137
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 198 21
95% 35 203 30
90% 35 203 31
70% 35 203 43
50% 42 282 32
40% 42 282 42
30% 42 282 67
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 190 29
95% 33 195 43
90% 33 195 45
70% 33 195 56
50% 33 195 89
40% 33 195 113
30% 37 272 76
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 110 54
95% 33 189 48
90% 33 193 50
70% 33 193 61
50% 33 193 95
40% 33 193 120
30% 33 193 139
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 123 47
95% 30 172 58
90% 30 172 62
70% 30 172 76
50% 30 172 111
40% 30 172 137
30% 30 172 156
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 174 36
95% 31 174 57
90% 31 174 61
70% 31 174 75
50% 38 272 37
40% 38 272 49
30% 38 272 72
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 195 24
95% 33 196 36
90% 33 196 39
70% 33 196 50
50% 33 196 87
40% 37 269 52
30% 37 269 75
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 146 42
95% 33 194 44
90% 33 194 46
70% 33 194 57
50% 33 194 91
40% 33 194 114
30% 33 194 136
Entity #21: Chains: U - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 185 32
95% 33 185 51
90% 33 185 54
70% 33 185 65
50% 33 185 101
40% 33 185 127
30% 33 185 147
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 171 37
95% 30 171 59
90% 30 171 63
70% 30 171 77
50% 31 210 73
40% 31 210 97
30% 31 210 120
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 188 30
95% 33 196 37
90% 33 196 40
70% 33 196 51
50% 37 269 39
40% 37 270 51
30% 37 270 73
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 195 25
95% 33 195 40
90% 33 195 42
70% 33 195 53
50% 38 273 36
40% 38 273 48
30% 38 275 70
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 200 17
95% 40 206 29
90% 40 206 30
70% 40 206 40
50% 40 206 80
40% 40 206 105
30% 45 243 90
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 199 20
95% 34 200 33
90% 34 200 34
70% 34 200 47
50% 38 241 54
40% 38 242 70
30% 38 242 94
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 195 22
95% 34 195 38
90% 34 199 35
70% 34 199 48
50% 40 275 35
40% 41 277 46
30% 47 327 43
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 106 73
95% 33 195 42
90% 33 195 44
70% 33 195 55
50% 37 269 40
40% 37 269 53
30% 42 318 49
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.