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Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Sequence Clustering and Redundancy Reduction Results
4JI8
Cluster # 55 Members. Sequence cutoff: 100% Cluster size: 145 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4Y4O 49 1r, 2r 30S ribosomal protein S18 300852  
2 4W2F 18 AR, CR 30S Ribosomal Protein S18 300852  
3 4Y4P 49 1r, 2r 30S ribosomal protein S18 300852  
4 4W2G 18 AR, CR 30S Ribosomal Protein S18 300852  
5 4LFB 18 R ribosomal protein S18 300852  
6 1VY4 18 AR, CR 30S ribosomal protein S18 300852  
7 4W2I 18 AR, CR 30S Ribosomal Protein S18 300852  
8 1VY5 18 AR, CR 30S ribosomal protein S18 300852  
9 4WQF 51 BR, DR 30S ribosomal protein S18 300852  
10 4W2H 18 AR, CR 30S Ribosomal Protein S18 300852  
11 4WPO 51 BR, DR 30S ribosomal protein S18 300852  
12 4V8I 18 AR, CR 30S Ribosomal Protein S18 274  
13 4JI1 18 R RIBOSOMAL PROTEIN S18 300852  
14 4Z3S 49 1r, 2r 30S ribosomal protein S18 300852  
15 4Z3Q 49 1r, 2r 30S Ribosomal Protein S18 300852  
16 4DR6 18 R 30S ribosomal protein S18 300852  
17 4LF7 18 R ribosomal protein S18 300852  
18 4LF8 18 R ribosomal protein S18 300852  
19 4WSD 18 9A, 9I 30S ribosomal protein S18 300852  
20 4WQU 51 BR, DR 30S ribosomal protein S18 300852  
21 4Z8C 49 1r, 2r 30S ribosomal protein S18 300852  
22 2UUB 18 R 30S RIBOSOMAL PROTEIN S18 300852  
23 4DV6 18 R ribosomal protein S18 300852  
24 4DR5 18 R 30S ribosomal protein S18 300852  
25 4DR2 18 R 30S ribosomal protein S18 300852  
26 4WRO 22 9I 30S ribosomal protein S18 300852  
27 4WQ1 18 9A, 9I 30S ribosomal protein S18 300852  
28 4LF9 18 R ribosomal protein S18 300852  
29 4WQY 51 BR, DR 30S ribosomal protein S18 300852  
30 4DUY 18 R ribosomal protein S18 300852  
31 4DV7 18 R ribosomal protein S18 300852  
32 4WRA 18 9A, 9I 30S ribosomal protein S18 300852  
33 4V8D 18 AU, CU 30S RIBOSOMAL PROTEIN S18 300852  
34 4DR3 18 R 30S ribosomal protein S18 300852  
35 4V90 18 AR 30S RIBOSOMAL PROTEIN S18 300852  
36 4JI3 18 R RIBOSOMAL PROTEIN S18 300852  
37 4WQR 18 9A, 9I 30S ribosomal protein S18 300852  
38 4JI6 18 R RIBOSOMAL PROTEIN S18 300852  
39 4JI8 18 R RIBOSOMAL PROTEIN S18 300852  
40 2UXC 18 R RIBOSOMAL PROTEIN S18 300852  
41 4V9R 18 AR, CR 30S Ribosomal Protein S18 274  
42 4LF4 18 R ribosomal protein S18 300852  
43 4LF6 18 R ribosomal protein S18 300852  
44 4JI7 18 R RIBOSOMAL PROTEIN S18 300852  
45 4WU1 18 9A, 9I 30S ribosomal protein S18 300852  
46 4WR6 18 9A, 9I 30S ribosomal protein S18 300852  
47 4V8B 18 AU, CU 30S RIBOSOMAL PROTEIN S18 300852  
48 2UUA 18 R 30S RIBOSOMAL PROTEIN S18 300852  
49 4V87 48 BU, CU 30S RIBOSOMAL PROTEIN S18 300852  
50 4V95 18 AR, CR 30S Ribosomal Protein S18 274  
51 1VY7 18 AR, CR 30S ribosomal protein S18 300852  
52 4LNT 18 QR, XR 30S ribosomal protein S18 300852  
53 4DR1 18 R 30S ribosomal protein S18 300852  
54 4LFA 18 R ribosomal protein S18 300852  
55 4DV4 18 R ribosomal protein S18 300852  
56 4JI0 18 R ribosomal protein S18 300852  
57 4V9S 18 AR, CR 30S Ribosomal Protein S18 274  
58 4JI2 18 R RIBOSOMAL PROTEIN S18 300852  
59 4DR7 18 R 30S ribosomal protein S18 300852  
60 4DUZ 18 R ribosomal protein S18 300852  
61 4V8G 18 AR, CR 30S Ribosomal Protein S18 300852  
62 4DV3 18 R ribosomal protein S18 300852  
63 4DV5 18 R ribosomal protein S18 300852  
64 2UUC 18 R 30S RIBOSOMAL PROTEIN S18 300852  
65 4LFC 18 R ribosomal protein S18 300852  
66 4WZO 18 9A, 9I 30S ribosomal protein S18 300852  
67 4JI4 18 R RIBOSOMAL PROTEIN S18 300852  
68 1VY6 18 AR, CR 30S ribosomal protein S18 300852  
69 4DV0 18 R ribosomal protein S18 300852  
70 4V9B 18 AU, CU 30S RIBOSOMAL PROTEIN S18 300852  
71 4V6F 48 BU, CU 30S ribosomal protein S18 300852  
72 4V8F 48 BU, CU 30S RIBOSOMAL PROTEIN S18 300852  
73 4DV2 18 R ribosomal protein S18 300852  
74 4DV1 18 R ribosomal protein S18 300852  
75 4V8H 18 AR, CR 30S Ribosomal Protein S18 300852  
76 4JI5 18 R RIBOSOMAL PROTEIN S18 300852  
77 4W2E 51 r 30S ribosomal protein S18 300852  
78 4V8C 48 CU, DU 30S RIBOSOMAL PROTEIN S18 300852  
79 4LF5 18 R ribosomal protein S18 300852  
80 4V9A 18 AU, CU 30S RIBOSOMAL PROTEIN S18 300852  
81 4V5J 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
82 4V7Y 18 AR, CR 30S ribosomal protein S18 300852  
83 4V8E 48 BU, DU 30S RIBOSOMAL PROTEIN S18 300852  
84 4DR4 18 R 30S ribosomal protein S18 300852  
85 4WZD 18 9A, 9I 30S ribosomal protein S18 300852  
86 2UU9 18 R 30S RIBOSOMAL PROTEIN S18 300852  
87 4V8Q 52 BR 30S RIBOSOMAL PROTEIN S18 300852  
88 4NXM 18 R ribosomal protein S18 300852  
89 4V5L 18 AR 30S RIBOSOMAL PROTEIN S18 300852  
90 4V7X 18 AR, CR 30S ribosomal protein S18 300852  
91 4V7W 18 AR, CR 30S ribosomal protein S18 300852  
92 4WT1 18 9A, 9I 30S ribosomal protein S18 300852  
93 4Z3R 49 1r, 2r 30S ribosomal protein S18 300852  
94 4NXN 18 R ribosomal protein S18 300852  
95 4LT8 18 QR, XR 30S ribosomal protein S18 300852  
96 4V51 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
97 4V7L 18 AR, CR 30S ribosomal protein S18 300852  
98 4V5R 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
99 4V8A 48 CR, DR 30S ribosomal protein S18 300852  
100 4V5K 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
101 4V5Q 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
102 4V7J 17 Ar, Br 30S ribosomal protein S18 300852  
103 4V5C 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
104 4V5E 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
105 4L47 18 QR, XR 30S ribosomal protein S18 300852  
106 4V5P 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
107 4V5D 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
108 4V7Z 18 AR, CR 30S ribosomal protein S18 300852  
109 4V8X 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
110 4V5S 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
111 2UXD 18 R RIBOSOMAL PROTEIN S18 300852  
112 4V6G 18 AU, CU 30S RIBOSOMAL PROTEIN S18 300852  
113 4V8N 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
114 4V97 18 AR, CR 30S ribosomal protein S18 300852  
115 4V7M 18 AR, CR 30S ribosomal protein S18 300852  
116 4WSM 18 9A, 9I 30S ribosomal protein S18 300852  
117 4TUD 18 QR, XR 30S ribosomal protein S18 300852  
118 4V6A 18 AR, CR 30S ribosomal protein S18 300852  
119 4TUE 18 QR, XR 30S ribosomal protein S18 300852  
120 4TUA 18 QR, XR 30S ribosomal protein S18 300852  
121 4V7K 17 Ar, Br 30S ribosomal protein S18 300852  
122 4TUC 18 QR, XR 30S ribosomal protein S18 300852  
123 4TUB 18 QR, XR 30S ribosomal protein S18 300852  
124 4P70 18 QR, XR 30S ribosomal protein S18 300852  
125 4V8U 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
126 4LSK 18 QR, XR 30S ribosomal protein S18 300852  
127 4P6F 18 QR, XR 30S ribosomal protein S18 300852  
128 4V67 20 AR, CR 30S ribosomal protein S18 274  
129 4V5F 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
130 1VVJ 18 QR, XR 30S ribosomal protein S18 300852  
131 4LFZ 18 QR, XR 30S ribosomal protein S18 300852  
132 4OX9 18 R 30S ribosomal protein S18 300852  
133 2UXB 18 R RIBOSOMAL PROTEIN S18 300852  
134 4V5A 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
135 4V63 20 AR, CR 30S ribosomal protein S18 262724  
136 4L71 18 QR, XR 30S ribosomal protein S18 300852  
137 4KVB 17 R 30S ribosomal protein S18 262724  
138 4V8J 18 AR, CR 30S ribosomal protein S18 300852  
139 4LEL 18 QR, XR 30S ribosomal protein S18 300852  
140 4V5G 18 AR, CR 30S RIBOSOMAL PROTEIN S18 300852  
141 4V8O 18 AR 30S RIBOSOMAL PROTEIN S18 300852  
142 4V4J 51 s 30S ribosomal protein S18 262724  
143 4V4I 51 s 30S ribosomal protein S18 262724  
144 4V5N 18 AR 30S RIBOSOMAL PROTEIN S18 300852  
145 4V5M 18 AR 30S RIBOSOMAL PROTEIN S18 300852  
 
Sequence Clusters for the Sequence Entities in PDB 4JI8
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 218 36
95% 43 219 51
90% 43 219 55
70% 43 219 67
50% 54 306 33
40% 54 306 43
30% 59 360 42
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 220 34
95% 43 220 47
90% 43 220 51
70% 43 220 62
50% 48 300 42
40% 55 361 30
30% 55 362 41
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 18460
95% 43 227 38
90% 43 227 42
70% 48 311 23
50% 48 312 32
40% 48 312 42
30% 48 312 57
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 221 32
95% 43 221 45
90% 43 221 49
70% 43 221 60
50% 48 305 38
40% 48 305 50
30% 53 361 47
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 219 35
95% 43 219 52
90% 43 219 56
70% 43 220 65
50% 43 220 92
40% 43 220 113
30% 43 220 126
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 223 29
95% 45 228 26
90% 45 228 31
70% 45 228 43
50% 53 313 29
40% 53 314 40
30% 53 314 55
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 215 37
95% 43 220 49
90% 43 220 53
70% 43 220 64
50% 43 220 91
40% 43 221 112
30% 48 303 70
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 134 59
95% 43 214 56
90% 43 218 58
70% 43 218 69
50% 43 218 94
40% 43 218 116
30% 43 218 128
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 39 145 55
95% 40 194 64
90% 40 194 66
70% 40 194 79
50% 40 194 111
40% 40 194 130
30% 40 194 150
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 44 223 27
95% 44 223 41
90% 44 223 46
70% 44 223 57
50% 49 303 37
40% 49 303 48
30% 49 303 67
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 220 30
95% 43 221 42
90% 43 221 47
70% 43 221 58
50% 48 299 41
40% 48 300 51
30% 48 300 69
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 42 170 49
95% 43 219 50
90% 43 219 54
70% 43 219 66
50% 43 219 93
40% 43 219 114
30% 43 219 127
Entity #21: Chains: U - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 210 40
95% 43 210 59
90% 43 210 62
70% 43 210 73
50% 43 210 98
40% 43 210 120
30% 43 210 133
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 193 45
95% 40 193 65
90% 40 193 67
70% 40 193 80
50% 41 236 78
40% 41 236 99
30% 41 236 119
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 213 38
95% 43 221 43
90% 43 221 48
70% 43 221 59
50% 48 300 39
40% 48 301 49
30% 48 301 68
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 220 33
95% 43 220 46
90% 43 220 50
70% 43 220 61
50% 49 304 36
40% 49 304 47
30% 49 306 65
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 44 225 24
95% 50 231 24
90% 50 231 29
70% 50 231 41
50% 50 231 83
40% 50 231 105
30% 56 270 79
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 44 224 26
95% 44 225 40
90% 44 225 44
70% 44 225 55
50% 49 268 51
40% 49 269 62
30% 49 269 81
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 44 220 31
95% 44 220 44
90% 44 224 45
70% 44 224 56
50% 51 306 34
40% 52 308 44
30% 58 365 40
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 39 130 75
95% 43 220 48
90% 43 220 52
70% 43 220 63
50% 48 300 43
40% 48 300 52
30% 53 356 48
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.