Sequence Similarity Clusters for the Entities in PDB 4JI8

Entity #1 | Chains: A
16S rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 56 268 39
95 % 56 269 53 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.1
PDBFlex
90 % 56 269 58
70 % 56 269 68
50 % 74 418 26
40 % 74 418 38
30 % 79 522 31
Entity #11 | Chains: K
RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 56 270 35
95 % 56 270 49 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.7
PDBFlex
90 % 56 270 54
70 % 56 270 64
50 % 68 412 33
40 % 75 522 19
30 % 75 522 32
Entity #12 | Chains: L
RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 22358
95 % 56 277 40 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 56 277 45
70 % 68 419 20
50 % 68 429 24
40 % 68 429 36
30 % 68 429 55
Entity #13 | Chains: M
RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 56 271 33
95 % 56 271 47 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.7
PDBFlex
90 % 56 271 52
70 % 56 271 62
50 % 68 416 31
40 % 68 416 44
30 % 73 520 34
Entity #14 | Chains: N
RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 56 269 38
95 % 56 269 54 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 56 269 59
70 % 56 277 56
50 % 56 277 91
40 % 56 277 115
30 % 56 277 123
Entity #15 | Chains: O
RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 56 273 30
95 % 58 278 38 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 58 278 43
70 % 58 278 54
50 % 73 425 25
40 % 73 430 35
30 % 73 430 54
Entity #16 | Chains: P
RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 56 265 41
95 % 56 270 51 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.4
PDBFlex
90 % 56 270 56
70 % 56 270 66
50 % 56 277 90
40 % 56 277 114
30 % 68 411 63
Entity #17 | Chains: Q
RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 48 177 58
95 % 56 264 56 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.6
PDBFlex
90 % 56 268 60
70 % 56 268 69
50 % 56 268 93
40 % 56 268 117
30 % 56 268 128
Entity #18 | Chains: R
RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 49 184 56
95 % 50 235 65 Flexibility: Low
Max RMSD: 8.4, Avg RMSD: 0.9
PDBFlex
90 % 50 235 70
70 % 50 235 83
50 % 50 235 111
40 % 50 235 135
30 % 50 235 143
Entity #19 | Chains: S
RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 57 273 29
95 % 57 273 42 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 0.9
PDBFlex
90 % 57 273 48
70 % 57 273 59
50 % 69 418 28
40 % 69 421 39
30 % 69 421 56
Entity #2 | Chains: B
RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 56 270 31
95 % 56 271 44 Flexibility: Low
Max RMSD: 9.2, Avg RMSD: 1.7
PDBFlex
90 % 56 271 50
70 % 56 271 60
50 % 68 407 35
40 % 68 412 43
30 % 68 412 62
Entity #20 | Chains: T
RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 55 218 50
95 % 56 269 52 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.7
PDBFlex
90 % 56 269 57
70 % 56 269 67
50 % 56 269 92
40 % 56 269 116
30 % 56 269 127
Entity #21 | Chains: U
RIBOSOMAL PROTEIN THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 56 260 43
95 % 56 260 59 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.5
PDBFlex
90 % 56 260 63
70 % 56 260 75
50 % 56 260 98
40 % 56 260 121
30 % 56 260 132
Entity #3 | Chains: C
RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 50 234 48
95 % 50 234 66 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 50 234 71
70 % 50 234 84
50 % 52 308 84
40 % 52 308 103
30 % 52 308 115
Entity #4 | Chains: D
RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 56 263 42
95 % 56 271 45 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.5
PDBFlex
90 % 56 271 51
70 % 56 271 61
50 % 68 413 30
40 % 68 418 40
30 % 68 418 57
Entity #5 | Chains: E
RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 56 270 34
95 % 56 270 48 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 0.6
PDBFlex
90 % 56 270 53
70 % 56 270 63
50 % 69 415 29
40 % 69 415 42
30 % 69 417 60
Entity #6 | Chains: F
RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 57 275 27
95 % 63 281 37 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 0.9
PDBFlex
90 % 63 281 41
70 % 63 281 52
50 % 63 281 88
40 % 63 281 109
30 % 75 352 93
Entity #7 | Chains: G
RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 57 274 28
95 % 57 275 41 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 0.8
PDBFlex
90 % 57 275 46
70 % 57 275 57
50 % 68 353 68
40 % 68 358 85
30 % 68 358 95
Entity #8 | Chains: H
RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 270 32
95 % 57 270 46
90 % 57 274 47
70 % 57 274 58
50 % 71 418 27
40 % 72 424 37
30 % 78 535 30
Entity #9 | Chains: I
RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 52 179 68
95 % 56 270 50 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 56 270 55
70 % 56 270 65
50 % 68 409 34
40 % 68 409 47
30 % 73 517 35

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4Y4O 49 1r, 2r 30S ribosomal protein S18 274
2 5J8B 51 r 30S ribosomal protein S18 274
3 4W2F 18 AR, CR 30S Ribosomal Protein S18 274
4 4Y4P 49 1r, 2r 30S ribosomal protein S18 274
5 5J4B 49 1r, 2r 30S ribosomal protein S18 274
6 4W2G 18 AR, CR 30S Ribosomal Protein S18 274
7 4LFB 18 R ribosomal protein S18 274
8 1VY4 18 AR, CR 30S ribosomal protein S18 274
9 4W2I 18 AR, CR 30S Ribosomal Protein S18 274
10 1VY5 18 AR, CR 30S ribosomal protein S18 274
11 5HCQ 49 1r, 2r 30S ribosomal protein S18 274
12 4WQF 51 BR, DR 30S ribosomal protein S18 274
13 4W2H 18 AR, CR 30S Ribosomal Protein S18 274
14 4WPO 51 BR, DR 30S ribosomal protein S18 274
15 4V8I 18 AR, CR 30S Ribosomal Protein S18 274
16 4JI1 18 R RIBOSOMAL PROTEIN S18 274
17 4Z3S 49 1r, 2r 30S ribosomal protein S18 274
18 5DOY 49 1r, 2r 30S Ribosomal Protein S18 274
19 5HD1 49 1r, 2r 30S ribosomal protein S18 274
20 4DR6 18 R 30S ribosomal protein S18 274
21 4LF7 18 R ribosomal protein S18 274
22 4LF8 18 R ribosomal protein S18 274
23 4WSD 18 9A, 9I 30S ribosomal protein S18 274
24 4WQU 51 BR, DR 30S ribosomal protein S18 274
25 5E81 18 9A, 9I 30S ribosomal protein S18 274
26 4Z8C 49 1r, 2r 30S ribosomal protein S18 274
27 5HCR 49 1r, 2r 30S ribosomal protein S18 274
28 2UUB 18 R 30S RIBOSOMAL PROTEIN S18 274
29 4DV6 18 R ribosomal protein S18 274
30 5IBB 18 9A, 9I 30S ribosomal protein S18 274
31 4DR5 18 R 30S ribosomal protein S18 274
32 5J4C 49 1r, 2r 30S ribosomal protein S18 274
33 4DR2 18 R 30S ribosomal protein S18 274
34 4WRO 22 9I 30S ribosomal protein S18 274
35 4WQ1 18 9A, 9I 30S ribosomal protein S18 274
36 4LF9 18 R ribosomal protein S18 274
37 4WQY 51 BR, DR 30S ribosomal protein S18 274
38 4DUY 18 R ribosomal protein S18 274
39 4DV7 18 R ribosomal protein S18 274
40 4WRA 18 9A, 9I 30S ribosomal protein S18 274
41 5IB7 18 9A, 9I 30S ribosomal protein S18 274
42 5HCP 49 1r, 2r 30S ribosomal protein S18 274
43 4V8D 18 AU, CU 30S RIBOSOMAL PROTEIN S18 274
44 4DR3 18 R 30S ribosomal protein S18 274
45 4V90 18 AR 30S RIBOSOMAL PROTEIN S18 274
46 4JI3 18 R RIBOSOMAL PROTEIN S18 274
47 4WQR 18 9A, 9I 30S ribosomal protein S18 274
48 4JI6 18 R RIBOSOMAL PROTEIN S18 274
49 4JI8 18 R RIBOSOMAL PROTEIN S18 274
50 2UXC 18 R RIBOSOMAL PROTEIN S18 274
51 5IB8 18 9A, 9I 30S ribosomal protein S18 274
52 4V9R 18 AR, CR 30S Ribosomal Protein S18 274
53 5EL6 18 9A, 9I 30S ribosomal protein S18 274
54 5EL7 18 9A, 9I 30S ribosomal protein S18 274
55 5VP2 49 1r, 2r 30S ribosomal protein S18 274
56 4LF4 18 R ribosomal protein S18 274
57 5DFE 52 QR, XR 30S ribosomal protein S18 274
58 4LF6 18 R ribosomal protein S18 274
59 4JI7 18 R RIBOSOMAL PROTEIN S18 274
60 4WU1 18 9A, 9I 30S ribosomal protein S18 274
61 5EL4 18 9A, 9I 30S ribosomal protein S18 274
62 4WR6 18 9A, 9I 30S ribosomal protein S18 274
63 4V8B 18 AU, CU 30S RIBOSOMAL PROTEIN S18 274
64 5HAU 51 1r, 2r 30S ribosomal protein S18 274
65 2UUA 18 R 30S RIBOSOMAL PROTEIN S18 274
66 4V87 48 BU, CU 30S RIBOSOMAL PROTEIN S18 274
67 4V95 18 AR, CR 30S Ribosomal Protein S18 274
68 1VY7 18 AR, CR 30S ribosomal protein S18 274
69 5E7K 18 9A, 9I 30S ribosomal protein S18 274
70 5EL5 18 9A, 9I 30S ribosomal protein S18 274
71 4LNT 18 QR, XR 30S ribosomal protein S18 274
72 4DR1 18 R 30S ribosomal protein S18 274
73 4LFA 18 R ribosomal protein S18 274
74 4DV4 18 R ribosomal protein S18 274
75 4YZV 18 QR, XR 30S ribosomal protein S18 274
76 4JI0 18 R ribosomal protein S18 274
77 4V9S 18 AR, CR 30S Ribosomal Protein S18 274
78 4JI2 18 R RIBOSOMAL PROTEIN S18 274
79 4DR7 18 R 30S ribosomal protein S18 274
80 4DUZ 18 R ribosomal protein S18 274
81 4V8G 18 AR, CR 30S Ribosomal Protein S18 274
82 4DV3 18 R ribosomal protein S18 274
83 4DV5 18 R ribosomal protein S18 274
84 2UUC 18 R 30S RIBOSOMAL PROTEIN S18 274
85 4LFC 18 R ribosomal protein S18 274
86 4WZO 18 9A, 9I 30S ribosomal protein S18 274
87 4JI4 18 R RIBOSOMAL PROTEIN S18 274
88 1VY6 18 AR, CR 30S ribosomal protein S18 274
89 4DV0 18 R ribosomal protein S18 274
90 4V9B 18 AU, CU 30S RIBOSOMAL PROTEIN S18 274
91 4V6F 48 BU, CU 30S ribosomal protein S18 274
92 4V8F 48 BU, CU 30S RIBOSOMAL PROTEIN S18 274
93 4DV2 18 R ribosomal protein S18 274
94 4DV1 18 R ribosomal protein S18 274
95 4V8H 18 AR, CR 30S Ribosomal Protein S18 274
96 4JI5 18 R RIBOSOMAL PROTEIN S18 274
97 4W2E 51 r 30S ribosomal protein S18 274
98 4V8C 48 CU, DU 30S RIBOSOMAL PROTEIN S18 274
99 5BR8 18 R 30S ribosomal protein S18 274
100 4LF5 18 R ribosomal protein S18 274
101 5J4D 52 AB, FD 30S ribosomal protein S18 274
102 4V9A 18 AU, CU 30S RIBOSOMAL PROTEIN S18 274
103 4V5J 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
104 4V7Y 18 AR, CR 30S ribosomal protein S18 274
105 4V8E 48 BU, DU 30S RIBOSOMAL PROTEIN S18 274
106 5J30 49 QR, XR 30S ribosomal protein S18 274
107 4DR4 18 R 30S ribosomal protein S18 274
108 4WZD 18 9A, 9I 30S ribosomal protein S18 274
109 2UU9 18 R 30S RIBOSOMAL PROTEIN S18 274
110 4V8Q 52 BR 30S RIBOSOMAL PROTEIN S18 274
111 4W4G 18 QR, XR 30S ribosomal protein S18 274
112 4NXM 18 R ribosomal protein S18 274
113 4V5L 18 AR 30S RIBOSOMAL PROTEIN S18 274
114 4YPB 18 QR, XR 30S ribosomal protein S18 274
115 4V7X 18 AR, CR 30S ribosomal protein S18 274
116 4V7W 18 AR, CR 30S ribosomal protein S18 274
117 4WT1 18 9A, 9I 30S ribosomal protein S18 274
118 5DOX 49 1r, 2r 30S ribosomal protein S18 274
119 4NXN 18 R ribosomal protein S18 274
120 4LT8 18 QR, XR 30S ribosomal protein S18 274
121 4V51 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
122 4V7L 18 AR, CR 30S ribosomal protein S18 274
123 4V5R 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
124 4V8A 48 CR, DR 30S ribosomal protein S18 274
125 4V5K 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
126 4V5Q 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
127 4V7J 17 Ar, Br 30S ribosomal protein S18 274
128 5J3C 49 QR, XR 30S ribosomal protein S18 274
129 4V5C 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
130 4V5E 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
131 4L47 18 QR, XR 30S ribosomal protein S18 274
132 4V5P 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
133 4ZSN 18 QR, XR 30S ribosomal protein S18 274
134 4V5D 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
135 4V7Z 18 AR, CR 30S ribosomal protein S18 274
136 4V8X 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
137 4V5S 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
138 2UXD 18 R RIBOSOMAL PROTEIN S18 274
139 4V6G 18 AU, CU 30S RIBOSOMAL PROTEIN S18 274
140 4V8N 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
141 4V97 18 AR, CR 30S ribosomal protein S18 274
142 4V7M 18 AR, CR 30S ribosomal protein S18 274
143 4WSM 18 9A, 9I 30S ribosomal protein S18 274
144 4TUD 18 QR, XR 30S ribosomal protein S18 274
145 4V6A 18 AR, CR 30S ribosomal protein S18 274
146 4TUE 18 QR, XR 30S ribosomal protein S18 274
147 4TUA 18 QR, XR 30S ribosomal protein S18 274
148 4V7K 17 Ar, Br 30S ribosomal protein S18 274
149 4YY3 18 R 30S ribosomal protein S18 274
150 4TUC 18 QR, XR 30S ribosomal protein S18 274
151 4TUB 18 QR, XR 30S ribosomal protein S18 274
152 4P70 18 QR, XR 30S ribosomal protein S18 274
153 4V8U 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
154 4LSK 18 QR, XR 30S ribosomal protein S18 274
155 4P6F 18 QR, XR 30S ribosomal protein S18 274
156 4V67 20 AR, CR 30S ribosomal protein S18 274
157 4V5F 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
158 1VVJ 18 QR, XR 30S ribosomal protein S18 274
159 4LFZ 18 QR, XR 30S ribosomal protein S18 274
160 5CZP 49 QR, XR 30S ribosomal protein S18 274
161 4OX9 18 R 30S ribosomal protein S18 274
162 2UXB 18 R RIBOSOMAL PROTEIN S18 274
163 4V5A 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
164 4V63 20 AR, CR 30S ribosomal protein S18 274
165 4L71 18 QR, XR 30S ribosomal protein S18 274
166 4KVB 17 R 30S ribosomal protein S18 274
167 4V8J 18 AR, CR 30S ribosomal protein S18 274
168 5D8B 45 OC, SA 30S ribosomal protein S18 274
169 4LEL 18 QR, XR 30S ribosomal protein S18 274
170 4V5G 18 AR, CR 30S RIBOSOMAL PROTEIN S18 274
171 4V8O 18 AR 30S RIBOSOMAL PROTEIN S18 274
172 4V4J 51 s 30S ribosomal protein S18 274
173 4V4I 51 s 30S ribosomal protein S18 274
174 5LMN 18 R 30S ribosomal protein S18 Q5SLQ0 274
175 5LMO 18 R 30S ribosomal protein S18 274
176 5LMP 18 R 30S ribosomal protein S18 274
177 5LMQ 18 R 30S ribosomal protein S18 274
178 5LMR 18 R 30S ribosomal protein S18 274
179 5LMS 18 R 30S ribosomal protein S18 274
180 5LMT 18 R 30S ribosomal protein S18 274
181 5LMU 18 R 30S ribosomal protein S18 274
182 5LMV 18 R 30S ribosomal protein S18 274
183 4V5N 18 AR 30S RIBOSOMAL PROTEIN S18 274
184 4V5M 18 AR 30S RIBOSOMAL PROTEIN S18 274