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Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Sequence Clustering and Redundancy Reduction Results
4JI8
Cluster # 50 Members. Sequence cutoff: 95% Cluster size: 193 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4Y4O 48 1q, 2q 30S ribosomal protein S17 300852  
2 4W2F 17 AQ, CQ 30S Ribosomal Protein S17 300852  
3 4Y4P 48 1q, 2q 30S ribosomal protein S17 300852  
4 4W2G 17 AQ, CQ 30S Ribosomal Protein S17 300852  
5 4LFB 17 Q ribosomal protein S17 300852  
6 1VY4 17 AQ, CQ 30S ribosomal protein S17 300852  
7 4W2I 17 AQ, CQ 30S Ribosomal Protein S17 300852  
8 1VY5 17 AQ, CQ 30S ribosomal protein S17 300852  
9 4WQF 50 BQ, DQ 30S ribosomal protein S17 300852  
10 4W2H 17 AQ, CQ 30S Ribosomal Protein S17 300852  
11 4WPO 50 BQ, DQ 30S ribosomal protein S17 300852  
12 4V8I 17 AQ, CQ 30S Ribosomal Protein S17 274  
13 4JI1 17 Q RIBOSOMAL PROTEIN S17 300852  
14 4DR6 17 Q 30S ribosomal protein S17 300852  
15 4LF7 17 Q ribosomal protein S17 300852  
16 4LF8 17 Q ribosomal protein S17 300852  
17 4WQU 50 BQ, DQ 30S ribosomal protein S17 300852  
18 2VQE 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
19 2UUB 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
20 4DV6 17 Q ribosomal protein S17 300852  
21 4JYA 17 Q 30S ribosomal protein S17 300852  
22 4DR5 17 Q 30S ribosomal protein S17 300852  
23 4KHP 17 Q 30S Ribosomal protein S17 300852  
24 4DR2 17 Q 30S ribosomal protein S17 300852  
25 4LF9 17 Q ribosomal protein S17 300852  
26 4WQY 50 BQ, DQ 30S ribosomal protein S17 300852  
27 4DUY 17 Q ribosomal protein S17 300852  
28 4DV7 17 Q ribosomal protein S17 300852  
29 4V9H 11 AQ 30S ribosomal protein S17 300852  
30 4V8D 17 AT, CT 30S RIBOSOMAL PROTEIN S17 300852  
31 4DR3 17 Q 30S ribosomal protein S17 300852  
32 4V90 17 AQ 30S RIBOSOMAL PROTEIN S17 300852  
33 4JI3 17 Q RIBOSOMAL PROTEIN S17 300852  
34 4JI6 17 Q RIBOSOMAL PROTEIN S17 300852  
35 4JI8 17 Q RIBOSOMAL PROTEIN S17 300852  
36 2UXC 17 Q RIBOSOMAL PROTEIN S17 300852  
37 4V9R 17 AQ, CQ 30S Ribosomal Protein S17 274  
38 4B3M 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
39 4LF4 17 Q ribosomal protein S17 300852  
40 4LF6 17 Q ribosomal protein S17 300852  
41 4JI7 17 Q RIBOSOMAL PROTEIN S17 300852  
42 4B3T 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
43 4V8B 17 AT, CT 30S RIBOSOMAL PROTEIN S17 300852  
44 2VQF 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
45 2UUA 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
46 4V87 47 BT, CT 30S RIBOSOMAL PROTEIN S17 300852  
47 4V95 17 AQ, CQ 30S Ribosomal Protein S17 274  
48 1VY7 17 AQ, CQ 30S ribosomal protein S17 300852  
49 4B3R 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
50 4LNT 17 QQ, XQ 30S ribosomal protein S17 300852  
51 4DR1 17 Q 30S ribosomal protein S17 300852  
52 4LFA 17 Q ribosomal protein S17 300852  
53 4DV4 17 Q ribosomal protein S17 300852  
54 4JI0 17 Q ribosomal protein S17 300852  
55 4V9S 17 AQ, CQ 30S Ribosomal Protein S17 274  
56 4JI2 17 Q RIBOSOMAL PROTEIN S17 300852  
57 4JV5 17 Q 30S ribosomal protein S17 300852  
58 4DR7 17 Q 30S ribosomal protein S17 300852  
59 1J5E 17 Q 30S RIBOSOMAL PROTEIN S17 274  
60 4GKK 17 Q 30S ribosomal protein S17 300852  
61 4DUZ 17 Q ribosomal protein S17 300852  
62 4V8G 17 AQ, CQ 30S Ribosomal Protein S17 300852  
63 4GKJ 17 Q 30S ribosomal protein S17 300852  
64 4DV3 17 Q ribosomal protein S17 300852  
65 4DV5 17 Q ribosomal protein S17 300852  
66 2UUC 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
67 4LFC 17 Q ribosomal protein S17 300852  
68 1FJG 18 Q 30S RIBOSOMAL PROTEIN S17 274  
69 3T1Y 17 Q 30S ribosomal protein S17 274  
70 4JI4 17 Q RIBOSOMAL PROTEIN S17 300852  
71 1VY6 17 AQ, CQ 30S ribosomal protein S17 300852  
72 1XMQ 19 Q 30S Ribosomal Protein S17 274  
73 4DV0 17 Q ribosomal protein S17 300852  
74 4V9B 17 AT, CT 30S RIBOSOMAL PROTEIN S17 300852  
75 4V6F 47 BT, CT 30S ribosomal protein S17 300852  
76 4V8F 47 BT, CT 30S RIBOSOMAL PROTEIN S17 300852  
77 4B3S 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
78 4DV2 17 Q ribosomal protein S17 300852  
79 4DV1 17 Q ribosomal protein S17 300852  
80 1N32 19 Q 30S RIBOSOMAL PROTEIN S17 274  
81 4V8H 17 AQ, CQ 30S Ribosomal Protein S17 300852  
82 4JI5 17 Q RIBOSOMAL PROTEIN S17 300852  
83 4K0K 17 Q 30S ribosomal protein S17 300852  
84 4W2E 50 q 30S ribosomal protein S17 300852  
85 4V8C 47 CT, DT 30S RIBOSOMAL PROTEIN S17 300852  
86 4LF5 17 Q ribosomal protein S17 300852  
87 4V9A 17 AT, CT 30S RIBOSOMAL PROTEIN S17 300852  
88 4V5J 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 300852  
89 4V7Y 17 AQ, CQ 30S ribosomal protein S17 300852  
90 4V8E 47 BT, DT 30S RIBOSOMAL PROTEIN S17 300852  
91 4DR4 17 Q 30S ribosomal protein S17 300852  
92 3OTO 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
93 2UU9 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
94 4V8Q 51 BQ 30S RIBOSOMAL PROTEIN S17 300852  
95 1HR0 18 Q 30S RIBOSOMAL PROTEIN S17 274  
96 4AQY 17 Q 30S RIBOSOMAL PROTEIN S17 274  
97 4NXM 17 Q ribosomal protein S17 300852  
98 4V5L 17 AQ 30S RIBOSOMAL PROTEIN S17 300852  
99 4V7X 17 AQ, CQ 30S ribosomal protein S17 300852  
100 1IBL 20 Q 30S RIBOSOMAL PROTEIN S17 274  
101 4V7W 17 AQ, CQ 30S ribosomal protein S17 300852  
102 4WUS 18 R 30S ribosomal protein S17 300852  
103 4WT8 17 R 30S ribosomal protein S17 300852  
104 4NXN 17 Q ribosomal protein S17 300852  
105 1XNR 19 Q 16S Ribosomal protein S17 274  
106 4LT8 17 QQ, XQ 30S ribosomal protein S17 300852  
107 4V51 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 300852  
108 4V7L 17 AQ, CQ 30S ribosomal protein S17 300852  
109 4V5R 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 300852  
110 1HNZ 18 Q 30S RIBOSOMAL PROTEIN S17 274  
111 1XNQ 19 Q Ribosomal protein S17 274  
112 4V8A 47 CQ, DQ 30S ribosomal protein S17 300852  
113 4V5K 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 300852  
114 4V5Q 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 300852  
115 4V7J 16 Aq, Bq 30S ribosomal protein S17 300852  
116 4V5C 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 300852  
117 4V5E 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 300852  
118 4L47 17 QQ, XQ 30S ribosomal protein S17 300852  
119 4V5P 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 300852  
120 4V5D 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 300852  
121 4V7Z 17 AQ, CQ 30S ribosomal protein S17 300852  
122 4V8X 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 300852  
123 4V5S 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 300852  
124 4V9I 17 AQ, CQ 30S Ribosomal protein S17 300852  
125 1XMO 19 Q 30S ribosomal protein S17 274  
126 3T1H 17 Q 30S ribosomal protein S17 274  
127 2UXD 17 Q RIBOSOMAL PROTEIN S17 300852  
128 1N33 19 Q 30S RIBOSOMAL PROTEIN S17 274  
129 1IBK 18 Q 30S RIBOSOMAL PROTEIN S17 274  
130 4V6G 17 AT, CT 30S RIBOSOMAL PROTEIN S17 300852  
131 4V8N 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 300852  
132 4V97 17 AQ, CQ 30S ribosomal protein S17 300852  
133 1HNW 18 Q 30S RIBOSOMAL PROTEIN S17 274  
134 4V7M 17 AQ, CQ 30S ribosomal protein S17 300852  
135 1IBM 20 Q 30S RIBOSOMAL PROTEIN S17 274  
136 4V6A 17 AQ, CQ 30S ribosomal protein S17 300852  
137 4V84 17 AQ, CQ 30S ribosomal protein S17 262724  
138 4V7K 16 Aq, Bq 30S ribosomal protein S17 300852  
139 1HNX 18 Q 30S RIBOSOMAL PROTEIN S17 274  
140 4V9Q 47 BQ, DQ 30S ribosomal protein S17 262724  
141 4YHH 17 Q 30S ribosomal protein S17 300852  
142 4V9N 20 AQ, CQ 30S ribosomal protein S17 262724  
143 4P70 17 QQ, XQ 30S ribosomal protein S17 300852  
144 4V8U 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 300852  
145 4LSK 17 QQ, XQ 30S ribosomal protein S17 300852  
146 4P6F 17 QQ, XQ 30S ribosomal protein S17 300852  
147 4V67 19 AQ, CQ 30S ribosomal protein S17 274  
148 4V83 17 AQ, CQ 30S ribosomal protein S17 262724  
149 4V5F 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 300852  
150 1VVJ 17 QQ, XQ 30S ribosomal protein S17 300852  
151 4LFZ 17 QQ, XQ 30S ribosomal protein S17 300852  
152 2E5L 18 Q 30S ribosomal protein S17 274  
153 2HHH 17 Q 30S ribosomal protein S17 300852  
154 4OX9 17 Q 30S ribosomal protein S17 300852  
155 2UXB 17 Q RIBOSOMAL PROTEIN S17 300852  
156 4V9K 16 AQ, CQ 30S ribosomal protein S17 262724  
157 1N34 18 Q 30S RIBOSOMAL PROTEIN S17 274  
158 4V5A 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 300852  
159 4V63 19 AQ, CQ 30S ribosomal protein S17 262724  
160 4L71 17 QQ, XQ 30S ribosomal protein S17 300852  
161 4XEJ 44 AS17, BS17 30S ribosomal protein S17 262724  
162 4V7P 17 AQ, DQ 30S ribosomal protein S17 262724  
163 4V8J 17 AQ, CQ 30S ribosomal protein S17 300852  
164 1N36 17 Q 30S RIBOSOMAL PROTEIN S17 274  
165 2ZM6 17 Q 30S ribosomal protein S17 274  
166 4LEL 17 QQ, XQ 30S ribosomal protein S17 300852  
167 2F4V 18 Q 30S ribosomal protein S17 274  
168 4V9L 16 AQ, CQ 30S ribosomal protein S17 262724  
169 4V5G 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 300852  
170 4V9J 16 AQ, CQ 30S ribosomal protein S17 262724  
171 4V8O 17 AQ 30S RIBOSOMAL PROTEIN S17 300852  
172 4V9M 16 AQ, CQ 30S ribosomal protein S17 262724  
173 4W29 16 AQ, CQ 30S ribosomal protein S17 262724  
174 4V4Y 19 AT 30S ribosomal protein S17 300852  
175 4V4J 50 r 30S ribosomal protein S17 262724  
176 4V4X 19 AT 30S ribosomal protein S17 300852  
177 4V4Z 20 AT 30S ribosomal protein S17 300852  
178 4V4I 50 r 30S ribosomal protein S17 262724  
179 4V4P 52 BT 30S ribosomal protein S17 300852  
180 4V4R 20 AQ 30S ribosomal protein S17 300852  
181 4V4S 20 AQ 30S ribosomal protein S17 300852  
182 4V4T 20 AQ 30S ribosomal protein S17 300852  
183 4V49 19 AQ 30S ribosomal protein S17 562  
184 4V4A 17 AQ 30S ribosomal protein S17 562  
185 4V4G 17 AQ, CQ, EQ, GQ, IQ 30S ribosomal protein S17 562  
186 4V5N 17 AQ 30S RIBOSOMAL PROTEIN S17 300852  
187 4V5M 17 AQ 30S RIBOSOMAL PROTEIN S17 300852  
188 4V68 11 AQ 30S ribosomal protein S17 274  
189 1ML5 22 T 30S RIBOSOMAL PROTEIN S17 562  
190 1JGO 20 T 30S RIBOSOMAL PROTEIN S17 274  
191 1JGP 20 T 30S RIBOSOMAL PROTEIN S17 274  
192 1JGQ 20 T 30S RIBOSOMAL PROTEIN S17 274  
193 4V42 20 AT 30S RIBOSOMAL PROTEIN S17 274  
 
Sequence Clusters for the Sequence Entities in PDB 4JI8
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 197 29
95% 35 198 45
90% 35 198 47
70% 35 198 60
50% 46 283 35
40% 46 283 45
30% 51 334 46
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 199 26
95% 35 199 40
90% 35 199 42
70% 35 199 54
50% 40 277 41
40% 47 335 35
30% 47 336 45
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 18004
95% 35 206 31
90% 35 206 33
70% 40 288 24
50% 40 289 34
40% 40 289 44
30% 40 289 69
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 200 23
95% 35 200 38
90% 35 200 40
70% 35 200 51
50% 40 282 39
40% 40 282 50
30% 45 335 49
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 198 27
95% 35 198 46
90% 35 198 48
70% 35 199 57
50% 35 199 90
40% 35 199 113
30% 35 199 137
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 202 21
95% 37 207 30
90% 37 207 32
70% 37 207 43
50% 45 290 33
40% 45 291 43
30% 45 291 67
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 194 30
95% 35 199 42
90% 35 199 44
70% 35 199 56
50% 35 199 89
40% 35 200 112
30% 40 280 76
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 113 66
95% 35 193 50
90% 35 197 49
70% 35 197 61
50% 35 197 93
40% 35 197 116
30% 35 197 139
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 125 59
95% 32 174 71
90% 32 174 75
70% 32 174 89
50% 32 174 130
40% 32 174 148
30% 32 174 164
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 202 20
95% 36 202 33
90% 36 202 36
70% 36 202 47
50% 41 280 38
40% 41 280 49
30% 41 280 73
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 199 24
95% 35 200 35
90% 35 200 38
70% 35 200 48
50% 40 276 43
40% 40 277 52
30% 40 277 75
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 149 54
95% 35 198 44
90% 35 198 46
70% 35 198 59
50% 35 198 92
40% 35 198 114
30% 35 198 138
Entity #21: Chains: U - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 189 32
95% 35 189 52
90% 35 189 55
70% 35 189 67
50% 35 189 112
40% 35 189 135
30% 35 189 153
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 173 48
95% 32 173 72
90% 32 173 76
70% 32 173 91
50% 33 214 77
40% 33 214 102
30% 33 214 123
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 192 31
95% 35 200 36
90% 35 200 39
70% 35 200 49
50% 40 277 40
40% 40 278 51
30% 40 278 74
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 199 25
95% 35 199 39
90% 35 199 41
70% 35 199 52
50% 41 281 37
40% 41 281 48
30% 41 283 72
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 204 18
95% 42 210 29
90% 42 210 31
70% 42 210 42
50% 42 210 83
40% 42 210 107
30% 48 249 87
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 203 19
95% 36 204 32
90% 36 204 34
70% 36 204 44
50% 41 247 55
40% 41 248 70
30% 41 248 94
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 199 22
95% 36 199 37
90% 36 203 35
70% 36 203 45
50% 43 283 36
40% 44 285 46
30% 50 339 44
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 109 86
95% 35 199 41
90% 35 199 43
70% 35 199 55
50% 40 277 42
40% 40 277 54
30% 45 330 50
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.