Sequence Similarity Clusters for the Entities in PDB 4JI8

Entity #1 | Chains: A
16S rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 267 37
95 % 56 268 51
90 % 56 268 54
70 % 56 268 65
50 % 74 394 25
40 % 74 394 37
30 % 79 490 29
Entity #11 | Chains: K
RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 269 35
95 % 56 269 47
90 % 56 269 50
70 % 56 269 60
50 % 68 388 34
40 % 75 487 18
30 % 75 487 31
Entity #12 | Chains: L
RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 21334
95 % 56 276 36
90 % 56 276 40
70 % 68 401 20
50 % 68 403 23
40 % 68 403 34
30 % 68 403 55
Entity #13 | Chains: M
RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 270 33
95 % 56 270 44
90 % 56 270 48
70 % 56 270 57
50 % 68 393 32
40 % 68 393 44
30 % 73 491 32
Entity #14 | Chains: N
RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 268 36
95 % 56 268 52
90 % 56 268 55
70 % 56 270 58
50 % 56 270 87
40 % 56 270 108
30 % 56 270 120
Entity #15 | Chains: O
RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 272 28
95 % 58 277 35
90 % 58 277 39
70 % 58 277 50
50 % 73 401 24
40 % 73 404 33
30 % 73 404 54
Entity #16 | Chains: P
RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 264 38
95 % 56 269 49
90 % 56 269 52
70 % 56 269 62
50 % 56 271 86
40 % 56 271 106
30 % 68 389 63
Entity #17 | Chains: Q
RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 48 176 55
95 % 56 263 53
90 % 56 267 56
70 % 56 267 66
50 % 56 267 90
40 % 56 267 111
30 % 56 267 123
Entity #18 | Chains: R
RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 49 183 53
95 % 50 234 62
90 % 50 234 66
70 % 50 234 77
50 % 50 234 103
40 % 50 234 129
30 % 50 234 140
Entity #19 | Chains: S
RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 272 27
95 % 57 272 40
90 % 57 272 45
70 % 57 272 54
50 % 69 393 28
40 % 69 393 39
30 % 69 393 58
Entity #2 | Chains: B
RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 269 31
95 % 56 270 41
90 % 56 270 46
70 % 56 270 55
50 % 68 387 33
40 % 68 390 42
30 % 68 390 61
Entity #20 | Chains: T
RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 217 49
95 % 56 268 50
90 % 56 268 53
70 % 56 268 64
50 % 56 268 89
40 % 56 268 110
30 % 56 268 122
Entity #21 | Chains: U
RIBOSOMAL PROTEIN THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 259 41
95 % 56 259 56
90 % 56 259 59
70 % 56 259 69
50 % 56 259 94
40 % 56 259 116
30 % 56 259 129
Entity #3 | Chains: C
RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 50 233 45
95 % 50 233 63
90 % 50 233 67
70 % 50 233 78
50 % 52 301 78
40 % 52 301 96
30 % 52 301 113
Entity #4 | Chains: D
RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 262 39
95 % 56 270 42
90 % 56 270 47
70 % 56 270 56
50 % 68 389 31
40 % 68 392 40
30 % 68 392 60
Entity #5 | Chains: E
RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 269 34
95 % 56 269 46
90 % 56 269 49
70 % 56 269 59
50 % 69 393 29
40 % 69 393 41
30 % 69 395 57
Entity #6 | Chains: F
RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 274 24
95 % 63 280 33
90 % 63 280 38
70 % 63 280 49
50 % 63 280 83
40 % 63 280 102
30 % 75 334 87
Entity #7 | Chains: G
RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 273 26
95 % 57 274 37
90 % 57 274 41
70 % 57 274 51
50 % 68 336 65
40 % 68 339 75
30 % 68 339 89
Entity #8 | Chains: H
RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 269 32
95 % 57 269 43
90 % 57 273 42
70 % 57 273 52
50 % 71 394 26
40 % 72 398 36
30 % 78 500 28
Entity #9 | Chains: I
RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 52 178 65
95 % 56 269 48
90 % 56 269 51
70 % 56 269 61
50 % 68 388 35
40 % 68 388 45
30 % 73 488 33

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4Y4O 48 1q, 2q 30S ribosomal protein S17 274
2 5J8B 50 q 30S ribosomal protein S17 274
3 4W2F 17 AQ, CQ 30S Ribosomal Protein S17 274
4 4Y4P 48 1q, 2q 30S ribosomal protein S17 274
5 5FDV 49 1q, 2q 30S ribosomal protein S17 274
6 5J4B 48 1q, 2q 30S ribosomal protein S17 274
7 4W2G 17 AQ, CQ 30S Ribosomal Protein S17 274
8 4LFB 17 Q ribosomal protein S17 274
9 1VY4 17 AQ, CQ 30S ribosomal protein S17 274
10 5FDU 48 1q, 2q 30S ribosomal protein S17 274
11 4W2I 17 AQ, CQ 30S Ribosomal Protein S17 274
12 1VY5 17 AQ, CQ 30S ribosomal protein S17 274
13 5HCQ 48 1q, 2q 30S ribosomal protein S17 274
14 4WQF 50 BQ, DQ 30S ribosomal protein S17 274
15 4W2H 17 AQ, CQ 30S Ribosomal Protein S17 274
16 4WPO 50 BQ, DQ 30S ribosomal protein S17 274
17 4V8I 17 AQ, CQ 30S Ribosomal Protein S17 274
18 4JI1 17 Q RIBOSOMAL PROTEIN S17 274
19 4Z3S 48 1q, 2q 30S ribosomal protein S17 274
20 5DOY 48 1q, 2q 30S Ribosomal Protein S17 274
21 5HD1 48 1q, 2q 30S ribosomal protein S17 274
22 4LF7 17 Q ribosomal protein S17 274
23 4LF8 17 Q ribosomal protein S17 274
24 4WSD 17 8A, 8I 30S ribosomal protein S17 274
25 4WQU 50 BQ, DQ 30S ribosomal protein S17 274
26 5E81 17 8A, 8I 30S ribosomal protein S17 274
27 4Z8C 48 1q, 2q 30S ribosomal protein S17 274
28 5HCR 48 1q, 2q 30S ribosomal protein S17 274
29 2UUB 17 Q 30S RIBOSOMAL PROTEIN S17 274
30 4JYA 17 Q 30S ribosomal protein S17 274
31 5IBB 17 8A, 8I 30S ribosomal protein S17 274
32 5J4C 48 1q, 2q 30S ribosomal protein S17 274
33 4KHP 17 Q 30S Ribosomal protein S17 274
34 4WRO 21 8I 30S ribosomal protein S17 274
35 4WQ1 17 8A, 8I 30S ribosomal protein S17 274
36 4LF9 17 Q ribosomal protein S17 274
37 4WQY 50 BQ, DQ 30S ribosomal protein S17 274
38 4WRA 17 8A, 8I 30S ribosomal protein S17 274
39 5IB7 17 8A, 8I 30S ribosomal protein S17 274
40 4X64 17 Q 30S ribosomal protein S17 274
41 5HCP 48 1q, 2q 30S ribosomal protein S17 274
42 4V9H 11 AQ 30S ribosomal protein S17 274
43 4V8D 17 AT, CT 30S RIBOSOMAL PROTEIN S17 274
44 4V90 17 AQ 30S RIBOSOMAL PROTEIN S17 274
45 4JI3 17 Q RIBOSOMAL PROTEIN S17 274
46 4WQR 17 8A, 8I 30S ribosomal protein S17 274
47 4JI6 17 Q RIBOSOMAL PROTEIN S17 274
48 4JI8 17 Q RIBOSOMAL PROTEIN S17 274
49 5IB8 17 8A, 8I 30S ribosomal protein S17 274
50 4V9R 17 AQ, CQ 30S Ribosomal Protein S17 274
51 5EL6 17 8A, 8I 30S ribosomal protein S17 274
52 5EL7 17 8A, 8I 30S ribosomal protein S17 274
53 4LF4 17 Q ribosomal protein S17 274
54 5DFE 51 QQ, XQ 30S ribosomal protein S17 274
55 4LF6 17 Q ribosomal protein S17 274
56 4JI7 17 Q RIBOSOMAL PROTEIN S17 274
57 4WU1 17 8A, 8I 30S ribosomal protein S17 274
58 5EL4 17 8A, 8I 30S ribosomal protein S17 274
59 4WR6 17 8A, 8I 30S ribosomal protein S17 274
60 4V8B 17 AT, CT 30S RIBOSOMAL PROTEIN S17 274
61 5HAU 50 1q, 2q 30S ribosomal protein S17 274
62 2UUA 17 Q 30S RIBOSOMAL PROTEIN S17 274
63 4V87 47 BT, CT 30S RIBOSOMAL PROTEIN S17 274
64 4V95 17 AQ, CQ 30S Ribosomal Protein S17 274
65 1VY7 17 AQ, CQ 30S ribosomal protein S17 274
66 5E7K 17 8A, 8I 30S ribosomal protein S17 274
67 5EL5 17 8A, 8I 30S ribosomal protein S17 274
68 4LNT 17 QQ, XQ 30S ribosomal protein S17 274
69 4LFA 17 Q ribosomal protein S17 274
70 4YZV 17 QQ, XQ 30S ribosomal protein S17 274
71 4JI0 17 Q ribosomal protein S17 274
72 5IWA 16 Q 30S ribosomal protein S17 274
73 4V9S 17 AQ, CQ 30S Ribosomal Protein S17 274
74 4JI2 17 Q RIBOSOMAL PROTEIN S17 274
75 4JV5 17 Q 30S ribosomal protein S17 274
76 4X65 17 Q 30S ribosomal protein S17 274
77 4V8G 17 AQ, CQ 30S Ribosomal Protein S17 274
78 2UUC 17 Q 30S RIBOSOMAL PROTEIN S17 274
79 4LFC 17 Q ribosomal protein S17 274
80 4WZO 17 8A, 8I 30S ribosomal protein S17 274
81 4JI4 17 Q RIBOSOMAL PROTEIN S17 274
82 1VY6 17 AQ, CQ 30S ribosomal protein S17 274
83 4V9B 17 AT, CT 30S RIBOSOMAL PROTEIN S17 274
84 4V6F 47 BT, CT 30S ribosomal protein S17 274
85 4X62 17 Q 30S ribosomal protein S17 274
86 4V8F 47 BT, CT 30S RIBOSOMAL PROTEIN S17 274
87 5F8K 48 1q, 2q 30S ribosomal protein S17 274
88 4V8H 17 AQ, CQ 30S Ribosomal Protein S17 274
89 4JI5 17 Q RIBOSOMAL PROTEIN S17 274
90 4K0K 17 Q 30S ribosomal protein S17 274
91 4W2E 50 q 30S ribosomal protein S17 274
92 4V8C 47 CT, DT 30S RIBOSOMAL PROTEIN S17 274
93 4LF5 17 Q ribosomal protein S17 274
94 4V9A 17 AT, CT 30S RIBOSOMAL PROTEIN S17 274
95 4V5J 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
96 4V7Y 17 AQ, CQ 30S ribosomal protein S17 274
97 4V8E 47 BT, DT 30S RIBOSOMAL PROTEIN S17 274
98 5J30 48 QQ, XQ 30S ribosomal protein S17 274
99 4WZD 17 8A, 8I 30S ribosomal protein S17 274
100 4X66 17 Q 30S ribosomal protein S17 274
101 2UU9 17 Q 30S RIBOSOMAL PROTEIN S17 274
102 4V8Q 51 BQ 30S RIBOSOMAL PROTEIN S17 274
103 4W4G 17 QQ, XQ 30S ribosomal protein S17 274
104 4NXM 17 Q ribosomal protein S17 274
105 4V5L 17 AQ 30S RIBOSOMAL PROTEIN S17 274
106 4YPB 17 QQ, XQ 30S ribosomal protein S17 274
107 4V7X 17 AQ, CQ 30S ribosomal protein S17 274
108 4ZER 48 1q, 2q 30S ribosomal protein S17 274
109 4V7W 17 AQ, CQ 30S ribosomal protein S17 274
110 4WT1 17 8A, 8I 30S ribosomal protein S17 274
111 4WT8 17 AR, BR 30S ribosomal protein S17 274
112 5DOX 48 1q, 2q 30S ribosomal protein S17 274
113 4NXN 17 Q ribosomal protein S17 274
114 4LT8 17 QQ, XQ 30S ribosomal protein S17 274
115 4V51 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
116 4V7L 17 AQ, CQ 30S ribosomal protein S17 274
117 4V5R 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
118 4V8A 47 CQ, DQ 30S ribosomal protein S17 274
119 4V5K 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
120 4V5Q 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
121 4V7J 16 Aq, Bq 30S ribosomal protein S17 274
122 5J3C 48 QQ, XQ 30S ribosomal protein S17 274
123 4V5C 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
124 4V5E 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
125 4L47 17 QQ, XQ 30S ribosomal protein S17 274
126 4V5P 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
127 4ZSN 17 QQ, XQ 30S ribosomal protein S17 274
128 4V5D 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
129 4V7Z 17 AQ, CQ 30S ribosomal protein S17 274
130 4V8X 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
131 4V5S 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
132 4V9I 17 AQ, CQ 30S Ribosomal protein S17 274
133 4V6G 17 AT, CT 30S RIBOSOMAL PROTEIN S17 274
134 4V8N 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
135 4V97 17 AQ, CQ 30S ribosomal protein S17 274
136 4V7M 17 AQ, CQ 30S ribosomal protein S17 274
137 4WSM 17 8A, 8I 30S ribosomal protein S17 274
138 4TUD 17 QQ, XQ 30S ribosomal protein S17 274
139 4V6A 17 AQ, CQ 30S ribosomal protein S17 274
140 4TUE 17 QQ, XQ 30S ribosomal protein S17 274
141 4TUA 17 QQ, XQ 30S ribosomal protein S17 274
142 4V7K 16 Aq, Bq 30S ribosomal protein S17 274
143 4YY3 17 Q 30S ribosomal protein S17 274
144 4TUC 17 QQ, XQ 30S ribosomal protein S17 274
145 4YHH 17 Q 30S ribosomal protein S17 274
146 4TUB 17 QQ, XQ 30S ribosomal protein S17 274
147 4P70 17 QQ, XQ 30S ribosomal protein S17 274
148 4V8U 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
149 4LSK 17 QQ, XQ 30S ribosomal protein S17 274
150 4P6F 17 QQ, XQ 30S ribosomal protein S17 274
151 4V5F 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
152 1VVJ 17 QQ, XQ 30S ribosomal protein S17 274
153 4LFZ 17 QQ, XQ 30S ribosomal protein S17 274
154 5CZP 48 QQ, XQ 30S ribosomal protein S17 274
155 4OX9 17 Q 30S ribosomal protein S17 274
156 4V5A 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
157 4L71 17 QQ, XQ 30S ribosomal protein S17 274
158 4V8J 17 AQ, CQ 30S ribosomal protein S17 274
159 4LEL 17 QQ, XQ 30S ribosomal protein S17 274
160 4V9L 16 AQ, CQ 30S ribosomal protein S17 274
161 4V5G 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
162 4V8O 17 AQ 30S RIBOSOMAL PROTEIN S17 274
163 4V9M 16 AQ, CQ 30S ribosomal protein S17 274
164 4W29 16 AQ, CQ 30S ribosomal protein S17 274
165 5LMN 17 Q 30S ribosomal protein S17 Q5SHP7 274
166 5LMO 17 Q 30S ribosomal protein S17 274
167 5LMP 17 Q 30S ribosomal protein S17 274
168 5LMQ 17 Q 30S ribosomal protein S17 274
169 5LMR 17 Q 30S ribosomal protein S17 274
170 5LMS 17 Q 30S ribosomal protein S17 274
171 5LMT 17 Q 30S ribosomal protein S17 274
172 5LMU 17 Q 30S ribosomal protein S17 274
173 5LMV 17 Q 30S ribosomal protein S17 274
174 4V5N 17 AQ 30S RIBOSOMAL PROTEIN S17 274
175 4V5M 17 AQ 30S RIBOSOMAL PROTEIN S17 274
176 4V68 11 AQ 30S ribosomal protein S17 274