Sequence Similarity Clusters for the Entities in PDB 4JI8

Entity #1 | Chains: A
16S rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 57 270 38
95 % 57 271 53 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.1
PDBFlex
90 % 57 271 58
70 % 57 271 70
50 % 75 432 28
40 % 75 432 41
30 % 81 545 34
Entity #11 | Chains: K
RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 57 272 36
95 % 57 272 49 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.7
PDBFlex
90 % 57 272 54
70 % 57 272 66
50 % 69 426 35
40 % 77 557 19
30 % 77 557 33
Entity #12 | Chains: L
RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 23462
95 % 57 279 39 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 57 279 45
70 % 69 430 21
50 % 69 443 26
40 % 69 443 39
30 % 69 443 58
Entity #13 | Chains: M
RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 57 273 34
95 % 57 273 47 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.7
PDBFlex
90 % 57 273 52
70 % 57 273 63
50 % 69 430 34
40 % 69 430 46
30 % 75 546 37
Entity #14 | Chains: N
RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 57 271 37
95 % 57 271 55 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 57 271 60
70 % 57 284 54
50 % 57 284 93
40 % 57 284 116
30 % 57 284 126
Entity #15 | Chains: O
RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 57 275 31
95 % 59 280 38 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 59 280 44
70 % 59 280 56
50 % 74 439 27
40 % 74 444 37
30 % 74 444 57
Entity #16 | Chains: P
RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 267 41
95 % 57 272 51
90 % 57 272 56
70 % 57 272 68
50 % 57 282 94
40 % 57 282 117
30 % 69 423 65
Entity #17 | Chains: Q
RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 49 179 61
95 % 57 266 56 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.6
PDBFlex
90 % 57 270 61
70 % 57 270 71
50 % 57 270 98
40 % 57 270 121
30 % 57 270 129
Entity #18 | Chains: R
RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 50 186 59
95 % 51 237 69 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 0.8
PDBFlex
90 % 51 237 71
70 % 51 237 86
50 % 51 237 117
40 % 51 237 141
30 % 51 237 146
Entity #19 | Chains: S
RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 58 275 30
95 % 58 275 43 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 0.9
PDBFlex
90 % 58 275 49
70 % 58 275 60
50 % 70 432 30
40 % 70 435 42
30 % 70 435 59
Entity #2 | Chains: B
RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 57 272 32
95 % 57 273 44 Flexibility: Low
Max RMSD: 9.2, Avg RMSD: 1.5
PDBFlex
90 % 57 273 50
70 % 57 273 61
50 % 69 419 37
40 % 69 424 47
30 % 69 424 64
Entity #20 | Chains: T
RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 56 220 53
95 % 57 271 52 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.7
PDBFlex
90 % 57 271 57
70 % 57 271 69
50 % 57 271 97
40 % 57 271 119
30 % 57 271 128
Entity #21 | Chains: U
RIBOSOMAL PROTEIN THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 57 262 43
95 % 57 262 59 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.5
PDBFlex
90 % 57 262 63
70 % 57 262 76
50 % 57 262 104
40 % 57 262 127
30 % 57 262 134
Entity #3 | Chains: C
RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 51 236 49
95 % 51 236 70 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 51 236 72
70 % 51 236 87
50 % 53 310 86
40 % 53 310 106
30 % 53 310 120
Entity #4 | Chains: D
RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 57 265 42
95 % 57 273 45 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.5
PDBFlex
90 % 57 273 51
70 % 57 273 62
50 % 69 427 32
40 % 69 432 43
30 % 69 432 60
Entity #5 | Chains: E
RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 57 272 35
95 % 57 272 48 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 0.6
PDBFlex
90 % 57 272 53
70 % 57 272 64
50 % 70 427 33
40 % 70 427 45
30 % 70 429 63
Entity #6 | Chains: F
RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 58 277 28
95 % 64 283 37 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 0.8
PDBFlex
90 % 64 283 42
70 % 64 283 52
50 % 64 283 92
40 % 64 283 115
30 % 76 366 95
Entity #7 | Chains: G
RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 58 276 29
95 % 58 277 40 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 0.8
PDBFlex
90 % 58 277 46
70 % 58 277 57
50 % 69 367 67
40 % 69 372 85
30 % 69 372 97
Entity #8 | Chains: H
RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 58 272 33
95 % 58 272 46 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.4
PDBFlex
90 % 58 276 47
70 % 58 276 58
50 % 72 432 29
40 % 73 438 40
30 % 80 562 32
Entity #9 | Chains: I
RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 53 181 71
95 % 57 272 50 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.8
PDBFlex
90 % 57 272 55
70 % 57 272 67
50 % 69 421 36
40 % 69 421 48
30 % 75 546 36

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4Y4O 48 1q, 2q 30S ribosomal protein S17 274
2 5J8B 50 q 30S ribosomal protein S17 274
3 4W2F 17 AQ, CQ 30S Ribosomal Protein S17 274
4 4Y4P 48 1q, 2q 30S ribosomal protein S17 274
5 5FDV 49 1q, 2q 30S ribosomal protein S17 274
6 5J4B 48 1q, 2q 30S ribosomal protein S17 274
7 4W2G 17 AQ, CQ 30S Ribosomal Protein S17 274
8 5W4K 48 1q, 2q 30S ribosomal protein S17 274
9 4LFB 17 Q ribosomal protein S17 274
10 1VY4 17 AQ, CQ 30S ribosomal protein S17 274
11 5FDU 48 1q, 2q 30S ribosomal protein S17 274
12 4W2I 17 AQ, CQ 30S Ribosomal Protein S17 274
13 1VY5 17 AQ, CQ 30S ribosomal protein S17 274
14 5HCQ 48 1q, 2q 30S ribosomal protein S17 274
15 4WQF 50 BQ, DQ 30S ribosomal protein S17 274
16 4W2H 17 AQ, CQ 30S Ribosomal Protein S17 274
17 4WPO 50 BQ, DQ 30S ribosomal protein S17 274
18 4V8I 17 AQ, CQ 30S Ribosomal Protein S17 274
19 4JI1 17 Q RIBOSOMAL PROTEIN S17 274
20 4Z3S 48 1q, 2q 30S ribosomal protein S17 274
21 5DOY 48 1q, 2q 30S Ribosomal Protein S17 274
22 5HD1 48 1q, 2q 30S ribosomal protein S17 274
23 4LF7 17 Q ribosomal protein S17 274
24 4LF8 17 Q ribosomal protein S17 274
25 4WSD 17 8A, 8I 30S ribosomal protein S17 274
26 4WQU 50 BQ, DQ 30S ribosomal protein S17 274
27 5E81 17 8A, 8I 30S ribosomal protein S17 274
28 4Z8C 48 1q, 2q 30S ribosomal protein S17 274
29 5HCR 48 1q, 2q 30S ribosomal protein S17 274
30 2UUB 17 Q 30S RIBOSOMAL PROTEIN S17 274
31 4JYA 17 Q 30S ribosomal protein S17 274
32 5IBB 17 8A, 8I 30S ribosomal protein S17 274
33 5J4C 48 1q, 2q 30S ribosomal protein S17 274
34 4KHP 17 Q 30S Ribosomal protein S17 274
35 4WRO 21 8I 30S ribosomal protein S17 274
36 4WQ1 17 8A, 8I 30S ribosomal protein S17 274
37 4LF9 17 Q ribosomal protein S17 274
38 4WQY 50 BQ, DQ 30S ribosomal protein S17 274
39 4WRA 17 8A, 8I 30S ribosomal protein S17 274
40 5IB7 17 8A, 8I 30S ribosomal protein S17 274
41 4X64 17 Q 30S ribosomal protein S17 274
42 5HCP 48 1q, 2q 30S ribosomal protein S17 274
43 4V9H 11 AQ 30S ribosomal protein S17 274
44 4V8D 17 AT, CT 30S RIBOSOMAL PROTEIN S17 274
45 4V90 17 AQ 30S RIBOSOMAL PROTEIN S17 274
46 4JI3 17 Q RIBOSOMAL PROTEIN S17 274
47 4WQR 17 8A, 8I 30S ribosomal protein S17 274
48 4JI6 17 Q RIBOSOMAL PROTEIN S17 274
49 4JI8 17 Q RIBOSOMAL PROTEIN S17 274
50 5IB8 17 8A, 8I 30S ribosomal protein S17 274
51 4V9R 17 AQ, CQ 30S Ribosomal Protein S17 274
52 5EL6 17 8A, 8I 30S ribosomal protein S17 274
53 5EL7 17 8A, 8I 30S ribosomal protein S17 274
54 5VP2 48 1q, 2q 30S ribosomal protein S17 274
55 4LF4 17 Q ribosomal protein S17 274
56 5DFE 51 QQ, XQ 30S ribosomal protein S17 274
57 5NDK 7 8A, 8I 30S ribosomal protein S17 274
58 4LF6 17 Q ribosomal protein S17 274
59 4JI7 17 Q RIBOSOMAL PROTEIN S17 274
60 4WU1 17 8A, 8I 30S ribosomal protein S17 274
61 5EL4 17 8A, 8I 30S ribosomal protein S17 274
62 4WR6 17 8A, 8I 30S ribosomal protein S17 274
63 4V8B 17 AT, CT 30S RIBOSOMAL PROTEIN S17 274
64 5HAU 50 1q, 2q 30S ribosomal protein S17 274
65 2UUA 17 Q 30S RIBOSOMAL PROTEIN S17 274
66 4V87 47 BT, CT 30S RIBOSOMAL PROTEIN S17 274
67 4V95 17 AQ, CQ 30S Ribosomal Protein S17 274
68 1VY7 17 AQ, CQ 30S ribosomal protein S17 274
69 5E7K 17 8A, 8I 30S ribosomal protein S17 274
70 5EL5 17 8A, 8I 30S ribosomal protein S17 274
71 4LNT 17 QQ, XQ 30S ribosomal protein S17 274
72 4LFA 17 Q ribosomal protein S17 274
73 4YZV 17 QQ, XQ 30S ribosomal protein S17 274
74 4JI0 17 Q ribosomal protein S17 274
75 5IWA 16 Q 30S ribosomal protein S17 274
76 4V9S 17 AQ, CQ 30S Ribosomal Protein S17 274
77 4JI2 17 Q RIBOSOMAL PROTEIN S17 274
78 4JV5 17 Q 30S ribosomal protein S17 274
79 4X65 17 Q 30S ribosomal protein S17 274
80 4V8G 17 AQ, CQ 30S Ribosomal Protein S17 274
81 2UUC 17 Q 30S RIBOSOMAL PROTEIN S17 274
82 4LFC 17 Q ribosomal protein S17 274
83 4WZO 17 8A, 8I 30S ribosomal protein S17 274
84 4JI4 17 Q RIBOSOMAL PROTEIN S17 274
85 1VY6 17 AQ, CQ 30S ribosomal protein S17 274
86 4V9B 17 AT, CT 30S RIBOSOMAL PROTEIN S17 274
87 4V6F 47 BT, CT 30S ribosomal protein S17 274
88 4X62 17 Q 30S ribosomal protein S17 274
89 4V8F 47 BT, CT 30S RIBOSOMAL PROTEIN S17 274
90 5F8K 48 1q, 2q 30S ribosomal protein S17 274
91 4V8H 17 AQ, CQ 30S Ribosomal Protein S17 274
92 4JI5 17 Q RIBOSOMAL PROTEIN S17 274
93 4K0K 17 Q 30S ribosomal protein S17 274
94 4W2E 50 q 30S ribosomal protein S17 274
95 4V8C 47 CT, DT 30S RIBOSOMAL PROTEIN S17 274
96 4LF5 17 Q ribosomal protein S17 274
97 4V9A 17 AT, CT 30S RIBOSOMAL PROTEIN S17 274
98 4V5J 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
99 4V7Y 17 AQ, CQ 30S ribosomal protein S17 274
100 4V8E 47 BT, DT 30S RIBOSOMAL PROTEIN S17 274
101 5J30 48 QQ, XQ 30S ribosomal protein S17 274
102 4WZD 17 8A, 8I 30S ribosomal protein S17 274
103 4X66 17 Q 30S ribosomal protein S17 274
104 2UU9 17 Q 30S RIBOSOMAL PROTEIN S17 274
105 4V8Q 51 BQ 30S RIBOSOMAL PROTEIN S17 274
106 4W4G 17 QQ, XQ 30S ribosomal protein S17 274
107 4NXM 17 Q ribosomal protein S17 274
108 4V5L 17 AQ 30S RIBOSOMAL PROTEIN S17 274
109 4YPB 17 QQ, XQ 30S ribosomal protein S17 274
110 4V7X 17 AQ, CQ 30S ribosomal protein S17 274
111 4ZER 48 1q, 2q 30S ribosomal protein S17 274
112 4V7W 17 AQ, CQ 30S ribosomal protein S17 274
113 4WT1 17 8A, 8I 30S ribosomal protein S17 274
114 4WT8 17 AR, BR 30S ribosomal protein S17 274
115 5DOX 48 1q, 2q 30S ribosomal protein S17 274
116 4NXN 17 Q ribosomal protein S17 274
117 4LT8 17 QQ, XQ 30S ribosomal protein S17 274
118 4V51 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
119 4V7L 17 AQ, CQ 30S ribosomal protein S17 274
120 4V5R 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
121 4V8A 47 CQ, DQ 30S ribosomal protein S17 274
122 4V5K 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
123 4V5Q 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
124 4V7J 16 Aq, Bq 30S ribosomal protein S17 274
125 5J3C 48 QQ, XQ 30S ribosomal protein S17 274
126 4V5C 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
127 4V5E 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
128 4L47 17 QQ, XQ 30S ribosomal protein S17 274
129 4V5P 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
130 4ZSN 17 QQ, XQ 30S ribosomal protein S17 274
131 4V5D 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
132 4V7Z 17 AQ, CQ 30S ribosomal protein S17 274
133 4V8X 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
134 4V5S 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
135 4V9I 17 AQ, CQ 30S Ribosomal protein S17 274
136 4V6G 17 AT, CT 30S RIBOSOMAL PROTEIN S17 274
137 4V8N 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
138 4V97 17 AQ, CQ 30S ribosomal protein S17 274
139 4V7M 17 AQ, CQ 30S ribosomal protein S17 274
140 4WSM 17 8A, 8I 30S ribosomal protein S17 274
141 4TUD 17 QQ, XQ 30S ribosomal protein S17 274
142 4V6A 17 AQ, CQ 30S ribosomal protein S17 274
143 4TUE 17 QQ, XQ 30S ribosomal protein S17 274
144 4TUA 17 QQ, XQ 30S ribosomal protein S17 274
145 4V7K 16 Aq, Bq 30S ribosomal protein S17 274
146 4YY3 17 Q 30S ribosomal protein S17 274
147 4TUC 17 QQ, XQ 30S ribosomal protein S17 274
148 4YHH 17 Q 30S ribosomal protein S17 274
149 4TUB 17 QQ, XQ 30S ribosomal protein S17 274
150 4P70 17 QQ, XQ 30S ribosomal protein S17 274
151 4V8U 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
152 4LSK 17 QQ, XQ 30S ribosomal protein S17 274
153 4P6F 17 QQ, XQ 30S ribosomal protein S17 274
154 4V5F 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
155 1VVJ 17 QQ, XQ 30S ribosomal protein S17 274
156 4LFZ 17 QQ, XQ 30S ribosomal protein S17 274
157 5CZP 48 QQ, XQ 30S ribosomal protein S17 274
158 4OX9 17 Q 30S ribosomal protein S17 274
159 4V5A 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
160 4L71 17 QQ, XQ 30S ribosomal protein S17 274
161 4V8J 17 AQ, CQ 30S ribosomal protein S17 274
162 4LEL 17 QQ, XQ 30S ribosomal protein S17 274
163 4V9L 16 AQ, CQ 30S ribosomal protein S17 274
164 4V5G 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
165 4V8O 17 AQ 30S RIBOSOMAL PROTEIN S17 274
166 4V9M 16 AQ, CQ 30S ribosomal protein S17 274
167 4W29 16 AQ, CQ 30S ribosomal protein S17 274
168 5LMN 17 Q 30S ribosomal protein S17 Q5SHP7 274
169 5LMO 17 Q 30S ribosomal protein S17 274
170 5LMP 17 Q 30S ribosomal protein S17 274
171 5LMQ 17 Q 30S ribosomal protein S17 274
172 5LMR 17 Q 30S ribosomal protein S17 274
173 5LMS 17 Q 30S ribosomal protein S17 274
174 5LMT 17 Q 30S ribosomal protein S17 274
175 5LMU 17 Q 30S ribosomal protein S17 274
176 5LMV 17 Q 30S ribosomal protein S17 274
177 4V5N 17 AQ 30S RIBOSOMAL PROTEIN S17 274
178 4V5M 17 AQ 30S RIBOSOMAL PROTEIN S17 274
179 4V68 11 AQ 30S ribosomal protein S17 274