Sequence Similarity Clusters for the Entities in PDB 4JI8

Entity #1 | Chains: A
16S rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 56 268 39
95 % 56 269 53 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.1
PDBFlex
90 % 56 269 58
70 % 56 269 68
50 % 74 419 26
40 % 74 419 38
30 % 80 525 31
Entity #11 | Chains: K
RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 270 35
95 % 56 270 49
90 % 56 270 54
70 % 56 270 64
50 % 68 413 32
40 % 76 525 19
30 % 76 525 32
Entity #12 | Chains: L
RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 22522
95 % 56 277 40
90 % 56 277 45
70 % 68 420 19
50 % 68 430 24
40 % 68 430 36
30 % 68 430 55
Entity #13 | Chains: M
RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 56 271 33
95 % 56 271 47 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.7
PDBFlex
90 % 56 271 52
70 % 56 271 62
50 % 68 417 31
40 % 68 417 46
30 % 74 523 34
Entity #14 | Chains: N
RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 56 269 38
95 % 56 269 54 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.8
PDBFlex
90 % 56 269 59
70 % 56 277 55
50 % 56 277 91
40 % 56 277 115
30 % 56 277 123
Entity #15 | Chains: O
RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 56 273 30
95 % 58 278 38 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.6
PDBFlex
90 % 58 278 43
70 % 58 278 53
50 % 73 426 25
40 % 73 431 35
30 % 73 431 54
Entity #16 | Chains: P
RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 56 265 41
95 % 56 270 51 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 56 270 56
70 % 56 270 66
50 % 56 277 90
40 % 56 277 114
30 % 68 412 63
Entity #17 | Chains: Q
RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 48 177 58
95 % 56 264 56 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.6
PDBFlex
90 % 56 268 60
70 % 56 268 69
50 % 56 268 94
40 % 56 268 118
30 % 56 268 128
Entity #18 | Chains: R
RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 49 184 56
95 % 50 235 65 Flexibility: Low
Max RMSD: 8.4, Avg RMSD: 0.9
PDBFlex
90 % 50 235 70
70 % 50 235 82
50 % 50 235 111
40 % 50 235 135
30 % 50 235 143
Entity #19 | Chains: S
RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 273 29
95 % 57 273 42
90 % 57 273 48
70 % 57 273 59
50 % 69 419 28
40 % 69 422 40
30 % 69 422 56
Entity #2 | Chains: B
RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 56 270 31
95 % 56 271 44 Flexibility: Low
Max RMSD: 9.2, Avg RMSD: 1.5
PDBFlex
90 % 56 271 50
70 % 56 271 60
50 % 68 408 36
40 % 68 413 45
30 % 68 413 62
Entity #20 | Chains: T
RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 55 218 50
95 % 56 269 52 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.7
PDBFlex
90 % 56 269 57
70 % 56 269 67
50 % 56 269 93
40 % 56 269 116
30 % 56 269 127
Entity #21 | Chains: U
RIBOSOMAL PROTEIN THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 56 260 43
95 % 56 260 59 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.5
PDBFlex
90 % 56 260 63
70 % 56 260 74
50 % 56 260 98
40 % 56 260 121
30 % 56 260 133
Entity #3 | Chains: C
RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 50 234 48
95 % 50 234 66 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 50 234 71
70 % 50 234 83
50 % 52 308 84
40 % 52 308 103
30 % 52 308 116
Entity #4 | Chains: D
RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 56 263 42
95 % 56 271 45 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.6
PDBFlex
90 % 56 271 51
70 % 56 271 61
50 % 68 414 30
40 % 68 419 41
30 % 68 419 57
Entity #5 | Chains: E
RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 56 270 34
95 % 56 270 48 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 0.6
PDBFlex
90 % 56 270 53
70 % 56 270 63
50 % 69 416 29
40 % 69 416 42
30 % 69 418 61
Entity #6 | Chains: F
RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 275 27
95 % 63 281 37
90 % 63 281 42
70 % 63 281 51
50 % 63 281 88
40 % 63 281 110
30 % 75 353 93
Entity #7 | Chains: G
RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 57 274 28
95 % 57 275 41 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 0.8
PDBFlex
90 % 57 275 46
70 % 57 275 56
50 % 68 354 68
40 % 68 359 85
30 % 68 359 95
Entity #8 | Chains: H
RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 57 270 32
95 % 57 270 46 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.4
PDBFlex
90 % 57 274 47
70 % 57 274 57
50 % 71 419 27
40 % 72 425 37
30 % 79 538 30
Entity #9 | Chains: I
RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 52 179 68
95 % 56 270 50 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.8
PDBFlex
90 % 56 270 55
70 % 56 270 65
50 % 68 410 35
40 % 68 410 48
30 % 74 520 35

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4Y4O 48 1q, 2q 30S ribosomal protein S17 274
2 5J8B 50 q 30S ribosomal protein S17 274
3 4W2F 17 AQ, CQ 30S Ribosomal Protein S17 274
4 4Y4P 48 1q, 2q 30S ribosomal protein S17 274
5 5FDV 49 1q, 2q 30S ribosomal protein S17 274
6 5J4B 48 1q, 2q 30S ribosomal protein S17 274
7 4W2G 17 AQ, CQ 30S Ribosomal Protein S17 274
8 4LFB 17 Q ribosomal protein S17 274
9 1VY4 17 AQ, CQ 30S ribosomal protein S17 274
10 5FDU 48 1q, 2q 30S ribosomal protein S17 274
11 4W2I 17 AQ, CQ 30S Ribosomal Protein S17 274
12 1VY5 17 AQ, CQ 30S ribosomal protein S17 274
13 5HCQ 48 1q, 2q 30S ribosomal protein S17 274
14 4WQF 50 BQ, DQ 30S ribosomal protein S17 274
15 4W2H 17 AQ, CQ 30S Ribosomal Protein S17 274
16 4WPO 50 BQ, DQ 30S ribosomal protein S17 274
17 4V8I 17 AQ, CQ 30S Ribosomal Protein S17 274
18 4JI1 17 Q RIBOSOMAL PROTEIN S17 274
19 4Z3S 48 1q, 2q 30S ribosomal protein S17 274
20 5DOY 48 1q, 2q 30S Ribosomal Protein S17 274
21 5HD1 48 1q, 2q 30S ribosomal protein S17 274
22 4LF7 17 Q ribosomal protein S17 274
23 4LF8 17 Q ribosomal protein S17 274
24 4WSD 17 8A, 8I 30S ribosomal protein S17 274
25 4WQU 50 BQ, DQ 30S ribosomal protein S17 274
26 5E81 17 8A, 8I 30S ribosomal protein S17 274
27 4Z8C 48 1q, 2q 30S ribosomal protein S17 274
28 5HCR 48 1q, 2q 30S ribosomal protein S17 274
29 2UUB 17 Q 30S RIBOSOMAL PROTEIN S17 274
30 4JYA 17 Q 30S ribosomal protein S17 274
31 5IBB 17 8A, 8I 30S ribosomal protein S17 274
32 5J4C 48 1q, 2q 30S ribosomal protein S17 274
33 4KHP 17 Q 30S Ribosomal protein S17 274
34 4WRO 21 8I 30S ribosomal protein S17 274
35 4WQ1 17 8A, 8I 30S ribosomal protein S17 274
36 4LF9 17 Q ribosomal protein S17 274
37 4WQY 50 BQ, DQ 30S ribosomal protein S17 274
38 4WRA 17 8A, 8I 30S ribosomal protein S17 274
39 5IB7 17 8A, 8I 30S ribosomal protein S17 274
40 4X64 17 Q 30S ribosomal protein S17 274
41 5HCP 48 1q, 2q 30S ribosomal protein S17 274
42 4V9H 11 AQ 30S ribosomal protein S17 274
43 4V8D 17 AT, CT 30S RIBOSOMAL PROTEIN S17 274
44 4V90 17 AQ 30S RIBOSOMAL PROTEIN S17 274
45 4JI3 17 Q RIBOSOMAL PROTEIN S17 274
46 4WQR 17 8A, 8I 30S ribosomal protein S17 274
47 4JI6 17 Q RIBOSOMAL PROTEIN S17 274
48 4JI8 17 Q RIBOSOMAL PROTEIN S17 274
49 5IB8 17 8A, 8I 30S ribosomal protein S17 274
50 4V9R 17 AQ, CQ 30S Ribosomal Protein S17 274
51 5EL6 17 8A, 8I 30S ribosomal protein S17 274
52 5EL7 17 8A, 8I 30S ribosomal protein S17 274
53 5VP2 48 1q, 2q 30S ribosomal protein S17 274
54 4LF4 17 Q ribosomal protein S17 274
55 5DFE 51 QQ, XQ 30S ribosomal protein S17 274
56 4LF6 17 Q ribosomal protein S17 274
57 4JI7 17 Q RIBOSOMAL PROTEIN S17 274
58 4WU1 17 8A, 8I 30S ribosomal protein S17 274
59 5EL4 17 8A, 8I 30S ribosomal protein S17 274
60 4WR6 17 8A, 8I 30S ribosomal protein S17 274
61 4V8B 17 AT, CT 30S RIBOSOMAL PROTEIN S17 274
62 5HAU 50 1q, 2q 30S ribosomal protein S17 274
63 2UUA 17 Q 30S RIBOSOMAL PROTEIN S17 274
64 4V87 47 BT, CT 30S RIBOSOMAL PROTEIN S17 274
65 4V95 17 AQ, CQ 30S Ribosomal Protein S17 274
66 1VY7 17 AQ, CQ 30S ribosomal protein S17 274
67 5E7K 17 8A, 8I 30S ribosomal protein S17 274
68 5EL5 17 8A, 8I 30S ribosomal protein S17 274
69 4LNT 17 QQ, XQ 30S ribosomal protein S17 274
70 4LFA 17 Q ribosomal protein S17 274
71 4YZV 17 QQ, XQ 30S ribosomal protein S17 274
72 4JI0 17 Q ribosomal protein S17 274
73 5IWA 16 Q 30S ribosomal protein S17 274
74 4V9S 17 AQ, CQ 30S Ribosomal Protein S17 274
75 4JI2 17 Q RIBOSOMAL PROTEIN S17 274
76 4JV5 17 Q 30S ribosomal protein S17 274
77 4X65 17 Q 30S ribosomal protein S17 274
78 4V8G 17 AQ, CQ 30S Ribosomal Protein S17 274
79 2UUC 17 Q 30S RIBOSOMAL PROTEIN S17 274
80 4LFC 17 Q ribosomal protein S17 274
81 4WZO 17 8A, 8I 30S ribosomal protein S17 274
82 4JI4 17 Q RIBOSOMAL PROTEIN S17 274
83 1VY6 17 AQ, CQ 30S ribosomal protein S17 274
84 4V9B 17 AT, CT 30S RIBOSOMAL PROTEIN S17 274
85 4V6F 47 BT, CT 30S ribosomal protein S17 274
86 4X62 17 Q 30S ribosomal protein S17 274
87 4V8F 47 BT, CT 30S RIBOSOMAL PROTEIN S17 274
88 5F8K 48 1q, 2q 30S ribosomal protein S17 274
89 4V8H 17 AQ, CQ 30S Ribosomal Protein S17 274
90 4JI5 17 Q RIBOSOMAL PROTEIN S17 274
91 4K0K 17 Q 30S ribosomal protein S17 274
92 4W2E 50 q 30S ribosomal protein S17 274
93 4V8C 47 CT, DT 30S RIBOSOMAL PROTEIN S17 274
94 4LF5 17 Q ribosomal protein S17 274
95 4V9A 17 AT, CT 30S RIBOSOMAL PROTEIN S17 274
96 4V5J 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
97 4V7Y 17 AQ, CQ 30S ribosomal protein S17 274
98 4V8E 47 BT, DT 30S RIBOSOMAL PROTEIN S17 274
99 5J30 48 QQ, XQ 30S ribosomal protein S17 274
100 4WZD 17 8A, 8I 30S ribosomal protein S17 274
101 4X66 17 Q 30S ribosomal protein S17 274
102 2UU9 17 Q 30S RIBOSOMAL PROTEIN S17 274
103 4V8Q 51 BQ 30S RIBOSOMAL PROTEIN S17 274
104 4W4G 17 QQ, XQ 30S ribosomal protein S17 274
105 4NXM 17 Q ribosomal protein S17 274
106 4V5L 17 AQ 30S RIBOSOMAL PROTEIN S17 274
107 4YPB 17 QQ, XQ 30S ribosomal protein S17 274
108 4V7X 17 AQ, CQ 30S ribosomal protein S17 274
109 4ZER 48 1q, 2q 30S ribosomal protein S17 274
110 4V7W 17 AQ, CQ 30S ribosomal protein S17 274
111 4WT1 17 8A, 8I 30S ribosomal protein S17 274
112 4WT8 17 AR, BR 30S ribosomal protein S17 274
113 5DOX 48 1q, 2q 30S ribosomal protein S17 274
114 4NXN 17 Q ribosomal protein S17 274
115 4LT8 17 QQ, XQ 30S ribosomal protein S17 274
116 4V51 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
117 4V7L 17 AQ, CQ 30S ribosomal protein S17 274
118 4V5R 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
119 4V8A 47 CQ, DQ 30S ribosomal protein S17 274
120 4V5K 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
121 4V5Q 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
122 4V7J 16 Aq, Bq 30S ribosomal protein S17 274
123 5J3C 48 QQ, XQ 30S ribosomal protein S17 274
124 4V5C 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
125 4V5E 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
126 4L47 17 QQ, XQ 30S ribosomal protein S17 274
127 4V5P 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
128 4ZSN 17 QQ, XQ 30S ribosomal protein S17 274
129 4V5D 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
130 4V7Z 17 AQ, CQ 30S ribosomal protein S17 274
131 4V8X 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
132 4V5S 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
133 4V9I 17 AQ, CQ 30S Ribosomal protein S17 274
134 4V6G 17 AT, CT 30S RIBOSOMAL PROTEIN S17 274
135 4V8N 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
136 4V97 17 AQ, CQ 30S ribosomal protein S17 274
137 4V7M 17 AQ, CQ 30S ribosomal protein S17 274
138 4WSM 17 8A, 8I 30S ribosomal protein S17 274
139 4TUD 17 QQ, XQ 30S ribosomal protein S17 274
140 4V6A 17 AQ, CQ 30S ribosomal protein S17 274
141 4TUE 17 QQ, XQ 30S ribosomal protein S17 274
142 4TUA 17 QQ, XQ 30S ribosomal protein S17 274
143 4V7K 16 Aq, Bq 30S ribosomal protein S17 274
144 4YY3 17 Q 30S ribosomal protein S17 274
145 4TUC 17 QQ, XQ 30S ribosomal protein S17 274
146 4YHH 17 Q 30S ribosomal protein S17 274
147 4TUB 17 QQ, XQ 30S ribosomal protein S17 274
148 4P70 17 QQ, XQ 30S ribosomal protein S17 274
149 4V8U 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
150 4LSK 17 QQ, XQ 30S ribosomal protein S17 274
151 4P6F 17 QQ, XQ 30S ribosomal protein S17 274
152 4V5F 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
153 1VVJ 17 QQ, XQ 30S ribosomal protein S17 274
154 4LFZ 17 QQ, XQ 30S ribosomal protein S17 274
155 5CZP 48 QQ, XQ 30S ribosomal protein S17 274
156 4OX9 17 Q 30S ribosomal protein S17 274
157 4V5A 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
158 4L71 17 QQ, XQ 30S ribosomal protein S17 274
159 4V8J 17 AQ, CQ 30S ribosomal protein S17 274
160 4LEL 17 QQ, XQ 30S ribosomal protein S17 274
161 4V9L 16 AQ, CQ 30S ribosomal protein S17 274
162 4V5G 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
163 4V8O 17 AQ 30S RIBOSOMAL PROTEIN S17 274
164 4V9M 16 AQ, CQ 30S ribosomal protein S17 274
165 4W29 16 AQ, CQ 30S ribosomal protein S17 274
166 5LMN 17 Q 30S ribosomal protein S17 Q5SHP7 274
167 5LMO 17 Q 30S ribosomal protein S17 274
168 5LMP 17 Q 30S ribosomal protein S17 274
169 5LMQ 17 Q 30S ribosomal protein S17 274
170 5LMR 17 Q 30S ribosomal protein S17 274
171 5LMS 17 Q 30S ribosomal protein S17 274
172 5LMT 17 Q 30S ribosomal protein S17 274
173 5LMU 17 Q 30S ribosomal protein S17 274
174 5LMV 17 Q 30S ribosomal protein S17 274
175 4V5N 17 AQ 30S RIBOSOMAL PROTEIN S17 274
176 4V5M 17 AQ 30S RIBOSOMAL PROTEIN S17 274
177 4V68 11 AQ 30S ribosomal protein S17 274