Sequence Similarity Clusters for the Entities in PDB 4JI8

Entity #1 | Chains: A
16S rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 253 36
95 % 56 254 49
90 % 56 254 54
70 % 56 254 64
50 % 74 361 28
40 % 74 361 38
30 % 79 434 36
Entity #11 | Chains: K
RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 255 34
95 % 56 255 45
90 % 56 255 50
70 % 56 255 59
50 % 68 355 35
40 % 75 436 20
30 % 75 437 34
Entity #12 | Chains: L
RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 20500
95 % 56 262 36
90 % 56 262 41
70 % 68 366 21
50 % 68 367 27
40 % 68 367 37
30 % 68 367 57
Entity #13 | Chains: M
RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 256 32
95 % 56 256 43
90 % 56 256 48
70 % 56 256 57
50 % 68 360 32
40 % 68 360 44
30 % 73 435 39
Entity #14 | Chains: N
RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 254 35
95 % 56 254 50
90 % 56 254 55
70 % 56 255 62
50 % 56 255 87
40 % 56 255 108
30 % 56 255 120
Entity #15 | Chains: O
RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 258 29
95 % 58 263 35
90 % 58 263 40
70 % 58 263 50
50 % 73 368 26
40 % 73 369 36
30 % 73 369 56
Entity #16 | Chains: P
RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 250 37
95 % 56 255 47
90 % 56 255 52
70 % 56 255 61
50 % 56 255 86
40 % 56 256 107
30 % 68 358 62
Entity #17 | Chains: Q
RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 48 162 59
95 % 56 249 52
90 % 56 253 56
70 % 56 253 65
50 % 56 253 89
40 % 56 253 111
30 % 56 253 124
Entity #18 | Chains: R
RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 49 169 57
95 % 50 220 64
90 % 50 220 69
70 % 50 220 79
50 % 50 220 110
40 % 50 220 132
30 % 50 220 142
Entity #19 | Chains: S
RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 258 28
95 % 57 258 38
90 % 57 258 44
70 % 57 258 53
50 % 69 358 31
40 % 69 358 41
30 % 69 358 59
Entity #2 | Chains: B
RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 255 30
95 % 56 256 40
90 % 56 256 46
70 % 56 256 55
50 % 68 354 34
40 % 68 355 45
30 % 68 355 61
Entity #20 | Chains: T
RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 203 48
95 % 56 254 48
90 % 56 254 53
70 % 56 254 63
50 % 56 254 88
40 % 56 254 109
30 % 56 254 121
Entity #21 | Chains: U
RIBOSOMAL PROTEIN THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 245 39
95 % 56 245 55
90 % 56 245 60
70 % 56 245 70
50 % 56 245 94
40 % 56 245 118
30 % 56 245 131
Entity #3 | Chains: C
RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 50 219 45
95 % 50 219 65
90 % 50 219 70
70 % 50 219 80
50 % 52 275 80
40 % 52 275 100
30 % 52 275 112
Entity #4 | Chains: D
RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 248 38
95 % 56 256 41
90 % 56 256 47
70 % 56 256 56
50 % 68 355 33
40 % 68 356 43
30 % 68 356 60
Entity #5 | Chains: E
RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 255 33
95 % 56 255 44
90 % 56 255 49
70 % 56 255 58
50 % 69 359 30
40 % 69 359 40
30 % 69 361 58
Entity #6 | Chains: F
RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 260 25
95 % 63 266 34
90 % 63 266 37
70 % 63 266 46
50 % 63 266 84
40 % 63 266 103
30 % 75 312 79
Entity #7 | Chains: G
RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 259 27
95 % 57 260 37
90 % 57 260 42
70 % 57 260 51
50 % 68 312 54
40 % 68 313 68
30 % 68 313 88
Entity #8 | Chains: H
RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 255 31
95 % 57 255 42
90 % 57 259 43
70 % 57 259 52
50 % 71 361 29
40 % 72 363 39
30 % 78 440 33
Entity #9 | Chains: I
RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 52 164 73
95 % 56 255 46
90 % 56 255 51
70 % 56 255 60
50 % 68 355 36
40 % 68 355 46
30 % 73 431 40

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4Y4O 48 1q, 2q 30S ribosomal protein S17 274
2 5J8B 50 q 30S ribosomal protein S17 274
3 4W2F 17 AQ, CQ 30S Ribosomal Protein S17 274
4 4Y4P 48 1q, 2q 30S ribosomal protein S17 274
5 5FDV 49 1q, 2q 30S ribosomal protein S17 274
6 5J4B 48 1q, 2q 30S ribosomal protein S17 274
7 4W2G 17 AQ, CQ 30S Ribosomal Protein S17 274
8 4LFB 17 Q ribosomal protein S17 274
9 1VY4 17 AQ, CQ 30S ribosomal protein S17 274
10 5FDU 48 1q, 2q 30S ribosomal protein S17 274
11 4W2I 17 AQ, CQ 30S Ribosomal Protein S17 274
12 1VY5 17 AQ, CQ 30S ribosomal protein S17 274
13 5HCQ 48 1q, 2q 30S ribosomal protein S17 274
14 4WQF 50 BQ, DQ 30S ribosomal protein S17 274
15 4W2H 17 AQ, CQ 30S Ribosomal Protein S17 274
16 4WPO 50 BQ, DQ 30S ribosomal protein S17 274
17 4V8I 17 AQ, CQ 30S Ribosomal Protein S17 274
18 4JI1 17 Q RIBOSOMAL PROTEIN S17 274
19 4Z3S 48 1q, 2q 30S ribosomal protein S17 274
20 5DOY 48 1q, 2q 30S Ribosomal Protein S17 274
21 5HD1 48 1q, 2q 30S ribosomal protein S17 274
22 4LF7 17 Q ribosomal protein S17 274
23 4LF8 17 Q ribosomal protein S17 274
24 4WSD 17 8A, 8I 30S ribosomal protein S17 274
25 4WQU 50 BQ, DQ 30S ribosomal protein S17 274
26 5E81 17 8A, 8I 30S ribosomal protein S17 274
27 4Z8C 48 1q, 2q 30S ribosomal protein S17 274
28 5HCR 48 1q, 2q 30S ribosomal protein S17 274
29 2UUB 17 Q 30S RIBOSOMAL PROTEIN S17 274
30 4JYA 17 Q 30S ribosomal protein S17 274
31 5IBB 17 8A, 8I 30S ribosomal protein S17 274
32 5J4C 48 1q, 2q 30S ribosomal protein S17 274
33 4KHP 17 Q 30S Ribosomal protein S17 274
34 4WRO 21 8I 30S ribosomal protein S17 274
35 4WQ1 17 8A, 8I 30S ribosomal protein S17 274
36 4LF9 17 Q ribosomal protein S17 274
37 4WQY 50 BQ, DQ 30S ribosomal protein S17 274
38 4WRA 17 8A, 8I 30S ribosomal protein S17 274
39 5IB7 17 8A, 8I 30S ribosomal protein S17 274
40 4X64 17 Q 30S ribosomal protein S17 274
41 5HCP 48 1q, 2q 30S ribosomal protein S17 274
42 4V9H 11 AQ 30S ribosomal protein S17 274
43 4V8D 17 AT, CT 30S RIBOSOMAL PROTEIN S17 274
44 4V90 17 AQ 30S RIBOSOMAL PROTEIN S17 274
45 4JI3 17 Q RIBOSOMAL PROTEIN S17 274
46 4WQR 17 8A, 8I 30S ribosomal protein S17 274
47 4JI6 17 Q RIBOSOMAL PROTEIN S17 274
48 4JI8 17 Q RIBOSOMAL PROTEIN S17 274
49 5IB8 17 8A, 8I 30S ribosomal protein S17 274
50 4V9R 17 AQ, CQ 30S Ribosomal Protein S17 274
51 5EL6 17 8A, 8I 30S ribosomal protein S17 274
52 5EL7 17 8A, 8I 30S ribosomal protein S17 274
53 4LF4 17 Q ribosomal protein S17 274
54 4LF6 17 Q ribosomal protein S17 274
55 4JI7 17 Q RIBOSOMAL PROTEIN S17 274
56 4WU1 17 8A, 8I 30S ribosomal protein S17 274
57 5EL4 17 8A, 8I 30S ribosomal protein S17 274
58 4WR6 17 8A, 8I 30S ribosomal protein S17 274
59 4V8B 17 AT, CT 30S RIBOSOMAL PROTEIN S17 274
60 5HAU 50 1q, 2q 30S ribosomal protein S17 274
61 2UUA 17 Q 30S RIBOSOMAL PROTEIN S17 274
62 4V87 47 BT, CT 30S RIBOSOMAL PROTEIN S17 274
63 4V95 17 AQ, CQ 30S Ribosomal Protein S17 274
64 1VY7 17 AQ, CQ 30S ribosomal protein S17 274
65 5E7K 17 8A, 8I 30S ribosomal protein S17 274
66 5EL5 17 8A, 8I 30S ribosomal protein S17 274
67 4LNT 17 QQ, XQ 30S ribosomal protein S17 274
68 4LFA 17 Q ribosomal protein S17 274
69 4YZV 17 QQ, XQ 30S ribosomal protein S17 274
70 4JI0 17 Q ribosomal protein S17 274
71 5IWA 16 Q 30S ribosomal protein S17 274
72 4V9S 17 AQ, CQ 30S Ribosomal Protein S17 274
73 4JI2 17 Q RIBOSOMAL PROTEIN S17 274
74 4JV5 17 Q 30S ribosomal protein S17 274
75 4X65 17 Q 30S ribosomal protein S17 274
76 4V8G 17 AQ, CQ 30S Ribosomal Protein S17 274
77 2UUC 17 Q 30S RIBOSOMAL PROTEIN S17 274
78 4LFC 17 Q ribosomal protein S17 274
79 4WZO 17 8A, 8I 30S ribosomal protein S17 274
80 4JI4 17 Q RIBOSOMAL PROTEIN S17 274
81 1VY6 17 AQ, CQ 30S ribosomal protein S17 274
82 4V9B 17 AT, CT 30S RIBOSOMAL PROTEIN S17 274
83 4V6F 47 BT, CT 30S ribosomal protein S17 274
84 4X62 17 Q 30S ribosomal protein S17 274
85 4V8F 47 BT, CT 30S RIBOSOMAL PROTEIN S17 274
86 5F8K 48 1q, 2q 30S ribosomal protein S17 274
87 4V8H 17 AQ, CQ 30S Ribosomal Protein S17 274
88 4JI5 17 Q RIBOSOMAL PROTEIN S17 274
89 4K0K 17 Q 30S ribosomal protein S17 274
90 4W2E 50 q 30S ribosomal protein S17 274
91 4V8C 47 CT, DT 30S RIBOSOMAL PROTEIN S17 274
92 4LF5 17 Q ribosomal protein S17 274
93 4V9A 17 AT, CT 30S RIBOSOMAL PROTEIN S17 274
94 4V5J 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
95 4V7Y 17 AQ, CQ 30S ribosomal protein S17 274
96 4V8E 47 BT, DT 30S RIBOSOMAL PROTEIN S17 274
97 4WZD 17 8A, 8I 30S ribosomal protein S17 274
98 4X66 17 Q 30S ribosomal protein S17 274
99 2UU9 17 Q 30S RIBOSOMAL PROTEIN S17 274
100 4V8Q 51 BQ 30S RIBOSOMAL PROTEIN S17 274
101 4W4G 17 QQ, XQ 30S ribosomal protein S17 274
102 4NXM 17 Q ribosomal protein S17 274
103 4V5L 17 AQ 30S RIBOSOMAL PROTEIN S17 274
104 4YPB 17 QQ, XQ 30S ribosomal protein S17 274
105 4V7X 17 AQ, CQ 30S ribosomal protein S17 274
106 4ZER 48 1q, 2q 30S ribosomal protein S17 274
107 4V7W 17 AQ, CQ 30S ribosomal protein S17 274
108 4WT1 17 8A, 8I 30S ribosomal protein S17 274
109 4WT8 17 AR, BR 30S ribosomal protein S17 274
110 5DOX 48 1q, 2q 30S ribosomal protein S17 274
111 4NXN 17 Q ribosomal protein S17 274
112 4LT8 17 QQ, XQ 30S ribosomal protein S17 274
113 4V51 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
114 4V7L 17 AQ, CQ 30S ribosomal protein S17 274
115 4V5R 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
116 4V8A 47 CQ, DQ 30S ribosomal protein S17 274
117 4V5K 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
118 4V5Q 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
119 4V7J 16 Aq, Bq 30S ribosomal protein S17 274
120 4V5C 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
121 4V5E 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
122 4L47 17 QQ, XQ 30S ribosomal protein S17 274
123 4V5P 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
124 4V5D 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
125 4V7Z 17 AQ, CQ 30S ribosomal protein S17 274
126 4V8X 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
127 4V5S 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
128 4V9I 17 AQ, CQ 30S Ribosomal protein S17 274
129 4V6G 17 AT, CT 30S RIBOSOMAL PROTEIN S17 274
130 4V8N 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
131 4V97 17 AQ, CQ 30S ribosomal protein S17 274
132 4V7M 17 AQ, CQ 30S ribosomal protein S17 274
133 4WSM 17 8A, 8I 30S ribosomal protein S17 274
134 4TUD 17 QQ, XQ 30S ribosomal protein S17 274
135 4V6A 17 AQ, CQ 30S ribosomal protein S17 274
136 4TUE 17 QQ, XQ 30S ribosomal protein S17 274
137 4TUA 17 QQ, XQ 30S ribosomal protein S17 274
138 4V7K 16 Aq, Bq 30S ribosomal protein S17 274
139 4YY3 17 Q 30S ribosomal protein S17 274
140 4TUC 17 QQ, XQ 30S ribosomal protein S17 274
141 4YHH 17 Q 30S ribosomal protein S17 274
142 4TUB 17 QQ, XQ 30S ribosomal protein S17 274
143 4P70 17 QQ, XQ 30S ribosomal protein S17 274
144 4V8U 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
145 4LSK 17 QQ, XQ 30S ribosomal protein S17 274
146 4P6F 17 QQ, XQ 30S ribosomal protein S17 274
147 4V5F 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
148 1VVJ 17 QQ, XQ 30S ribosomal protein S17 274
149 4LFZ 17 QQ, XQ 30S ribosomal protein S17 274
150 4OX9 17 Q 30S ribosomal protein S17 274
151 4V5A 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
152 4L71 17 QQ, XQ 30S ribosomal protein S17 274
153 4V8J 17 AQ, CQ 30S ribosomal protein S17 274
154 4LEL 17 QQ, XQ 30S ribosomal protein S17 274
155 4V9L 16 AQ, CQ 30S ribosomal protein S17 274
156 4V5G 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
157 4V8O 17 AQ 30S RIBOSOMAL PROTEIN S17 274
158 4V9M 16 AQ, CQ 30S ribosomal protein S17 274
159 4W29 16 AQ, CQ 30S ribosomal protein S17 274
160 4V5N 17 AQ 30S RIBOSOMAL PROTEIN S17 274
161 4V5M 17 AQ 30S RIBOSOMAL PROTEIN S17 274
162 4V68 11 AQ 30S ribosomal protein S17 274