Sequence Similarity Clusters for the Entities in PDB 4JI8

Entity #1 | Chains: A
16S rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 253 35
95 % 56 254 48
90 % 56 254 53
70 % 56 254 63
50 % 74 359 28
40 % 74 359 38
30 % 79 432 35
Entity #11 | Chains: K
RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 255 33
95 % 56 255 43
90 % 56 255 48
70 % 56 255 57
50 % 68 353 35
40 % 75 434 20
30 % 75 435 33
Entity #12 | Chains: L
RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 20364
95 % 56 262 35
90 % 56 262 40
70 % 68 364 22
50 % 68 365 27
40 % 68 365 37
30 % 68 365 56
Entity #13 | Chains: M
RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 256 31
95 % 56 256 41
90 % 56 256 46
70 % 56 256 55
50 % 68 358 32
40 % 68 358 43
30 % 73 433 38
Entity #14 | Chains: N
RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 254 34
95 % 56 254 49
90 % 56 254 54
70 % 56 255 60
50 % 56 255 86
40 % 56 255 107
30 % 56 255 120
Entity #15 | Chains: O
RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 258 27
95 % 58 263 34
90 % 58 263 39
70 % 58 263 49
50 % 73 366 26
40 % 73 367 36
30 % 73 367 55
Entity #16 | Chains: P
RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 250 36
95 % 56 255 45
90 % 56 255 50
70 % 56 255 59
50 % 56 255 85
40 % 56 256 106
30 % 68 356 61
Entity #17 | Chains: Q
RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 48 162 57
95 % 56 249 51
90 % 56 253 55
70 % 56 253 64
50 % 56 253 88
40 % 56 253 109
30 % 56 253 123
Entity #18 | Chains: R
RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 49 169 56
95 % 50 220 63
90 % 50 220 68
70 % 50 220 78
50 % 50 220 108
40 % 50 220 131
30 % 50 220 142
Entity #19 | Chains: S
RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 258 26
95 % 57 258 37
90 % 57 258 43
70 % 57 258 52
50 % 69 356 31
40 % 69 356 41
30 % 69 356 58
Entity #2 | Chains: B
RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 255 28
95 % 56 256 38
90 % 56 256 44
70 % 56 256 53
50 % 68 352 34
40 % 68 353 44
30 % 68 353 60
Entity #20 | Chains: T
RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 203 47
95 % 56 254 47
90 % 56 254 52
70 % 56 254 62
50 % 56 254 87
40 % 56 254 108
30 % 56 254 121
Entity #21 | Chains: U
RIBOSOMAL PROTEIN THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 245 38
95 % 56 245 53
90 % 56 245 58
70 % 56 245 68
50 % 56 245 93
40 % 56 245 117
30 % 56 245 131
Entity #3 | Chains: C
RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 50 219 44
95 % 50 219 64
90 % 50 219 69
70 % 50 219 79
50 % 52 273 78
40 % 52 273 100
30 % 52 273 112
Entity #4 | Chains: D
RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 248 37
95 % 56 256 39
90 % 56 256 45
70 % 56 256 54
50 % 68 353 33
40 % 68 354 42
30 % 68 354 59
Entity #5 | Chains: E
RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 255 32
95 % 56 255 42
90 % 56 255 47
70 % 56 255 56
50 % 69 357 30
40 % 69 357 40
30 % 69 359 57
Entity #6 | Chains: F
RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 260 24
95 % 63 266 33
90 % 63 266 36
70 % 63 266 45
50 % 63 266 83
40 % 63 266 102
30 % 75 312 77
Entity #7 | Chains: G
RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 259 25
95 % 57 260 36
90 % 57 260 41
70 % 57 260 50
50 % 68 312 52
40 % 68 313 64
30 % 68 313 85
Entity #8 | Chains: H
RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 255 30
95 % 57 255 40
90 % 57 259 42
70 % 57 259 51
50 % 71 359 29
40 % 72 361 39
30 % 78 438 32
Entity #9 | Chains: I
RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 52 164 72
95 % 56 255 44
90 % 56 255 49
70 % 56 255 58
50 % 68 353 36
40 % 68 353 45
30 % 73 429 39

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4Y4O 48 1q, 2q 30S ribosomal protein S17 274
2 5J8B 50 q 30S ribosomal protein S17 274
3 4W2F 17 AQ, CQ 30S Ribosomal Protein S17 274
4 4Y4P 48 1q, 2q 30S ribosomal protein S17 274
5 5FDV 49 1q, 2q 30S ribosomal protein S17 274
6 5J4B 48 1q, 2q 30S ribosomal protein S17 274
7 4W2G 17 AQ, CQ 30S Ribosomal Protein S17 274
8 4LFB 17 Q ribosomal protein S17 274
9 1VY4 17 AQ, CQ 30S ribosomal protein S17 274
10 5FDU 48 1q, 2q 30S ribosomal protein S17 274
11 4W2I 17 AQ, CQ 30S Ribosomal Protein S17 274
12 1VY5 17 AQ, CQ 30S ribosomal protein S17 274
13 5HCQ 48 1q, 2q 30S ribosomal protein S17 274
14 4WQF 50 BQ, DQ 30S ribosomal protein S17 274
15 4W2H 17 AQ, CQ 30S Ribosomal Protein S17 274
16 4WPO 50 BQ, DQ 30S ribosomal protein S17 274
17 4V8I 17 AQ, CQ 30S Ribosomal Protein S17 274
18 4JI1 17 Q RIBOSOMAL PROTEIN S17 274
19 4Z3S 48 1q, 2q 30S ribosomal protein S17 274
20 5DOY 48 1q, 2q 30S Ribosomal Protein S17 274
21 5HD1 48 1q, 2q 30S ribosomal protein S17 274
22 4LF7 17 Q ribosomal protein S17 274
23 4LF8 17 Q ribosomal protein S17 274
24 4WSD 17 8A, 8I 30S ribosomal protein S17 274
25 4WQU 50 BQ, DQ 30S ribosomal protein S17 274
26 5E81 17 8A, 8I 30S ribosomal protein S17 274
27 4Z8C 48 1q, 2q 30S ribosomal protein S17 274
28 5HCR 48 1q, 2q 30S ribosomal protein S17 274
29 2UUB 17 Q 30S RIBOSOMAL PROTEIN S17 274
30 4JYA 17 Q 30S ribosomal protein S17 274
31 5IBB 17 8A, 8I 30S ribosomal protein S17 274
32 5J4C 48 1q, 2q 30S ribosomal protein S17 274
33 4KHP 17 Q 30S Ribosomal protein S17 274
34 4WRO 21 8I 30S ribosomal protein S17 274
35 4WQ1 17 8A, 8I 30S ribosomal protein S17 274
36 4LF9 17 Q ribosomal protein S17 274
37 4WQY 50 BQ, DQ 30S ribosomal protein S17 274
38 4WRA 17 8A, 8I 30S ribosomal protein S17 274
39 5IB7 17 8A, 8I 30S ribosomal protein S17 274
40 4X64 17 Q 30S ribosomal protein S17 274
41 5HCP 48 1q, 2q 30S ribosomal protein S17 274
42 4V9H 11 AQ 30S ribosomal protein S17 274
43 4V8D 17 AT, CT 30S RIBOSOMAL PROTEIN S17 274
44 4V90 17 AQ 30S RIBOSOMAL PROTEIN S17 274
45 4JI3 17 Q RIBOSOMAL PROTEIN S17 274
46 4WQR 17 8A, 8I 30S ribosomal protein S17 274
47 4JI6 17 Q RIBOSOMAL PROTEIN S17 274
48 4JI8 17 Q RIBOSOMAL PROTEIN S17 274
49 5IB8 17 8A, 8I 30S ribosomal protein S17 274
50 4V9R 17 AQ, CQ 30S Ribosomal Protein S17 274
51 5EL6 17 8A, 8I 30S ribosomal protein S17 274
52 5EL7 17 8A, 8I 30S ribosomal protein S17 274
53 4LF4 17 Q ribosomal protein S17 274
54 4LF6 17 Q ribosomal protein S17 274
55 4JI7 17 Q RIBOSOMAL PROTEIN S17 274
56 4WU1 17 8A, 8I 30S ribosomal protein S17 274
57 5EL4 17 8A, 8I 30S ribosomal protein S17 274
58 4WR6 17 8A, 8I 30S ribosomal protein S17 274
59 4V8B 17 AT, CT 30S RIBOSOMAL PROTEIN S17 274
60 5HAU 50 1q, 2q 30S ribosomal protein S17 274
61 2UUA 17 Q 30S RIBOSOMAL PROTEIN S17 274
62 4V87 47 BT, CT 30S RIBOSOMAL PROTEIN S17 274
63 4V95 17 AQ, CQ 30S Ribosomal Protein S17 274
64 1VY7 17 AQ, CQ 30S ribosomal protein S17 274
65 5E7K 17 8A, 8I 30S ribosomal protein S17 274
66 5EL5 17 8A, 8I 30S ribosomal protein S17 274
67 4LNT 17 QQ, XQ 30S ribosomal protein S17 274
68 4LFA 17 Q ribosomal protein S17 274
69 4YZV 17 QQ, XQ 30S ribosomal protein S17 274
70 4JI0 17 Q ribosomal protein S17 274
71 5IWA 16 Q 30S ribosomal protein S17 274
72 4V9S 17 AQ, CQ 30S Ribosomal Protein S17 274
73 4JI2 17 Q RIBOSOMAL PROTEIN S17 274
74 4JV5 17 Q 30S ribosomal protein S17 274
75 4X65 17 Q 30S ribosomal protein S17 274
76 4V8G 17 AQ, CQ 30S Ribosomal Protein S17 274
77 2UUC 17 Q 30S RIBOSOMAL PROTEIN S17 274
78 4LFC 17 Q ribosomal protein S17 274
79 4WZO 17 8A, 8I 30S ribosomal protein S17 274
80 4JI4 17 Q RIBOSOMAL PROTEIN S17 274
81 1VY6 17 AQ, CQ 30S ribosomal protein S17 274
82 4V9B 17 AT, CT 30S RIBOSOMAL PROTEIN S17 274
83 4V6F 47 BT, CT 30S ribosomal protein S17 274
84 4X62 17 Q 30S ribosomal protein S17 274
85 4V8F 47 BT, CT 30S RIBOSOMAL PROTEIN S17 274
86 5F8K 48 1q, 2q 30S ribosomal protein S17 274
87 4V8H 17 AQ, CQ 30S Ribosomal Protein S17 274
88 4JI5 17 Q RIBOSOMAL PROTEIN S17 274
89 4K0K 17 Q 30S ribosomal protein S17 274
90 4W2E 50 q 30S ribosomal protein S17 274
91 4V8C 47 CT, DT 30S RIBOSOMAL PROTEIN S17 274
92 4LF5 17 Q ribosomal protein S17 274
93 4V9A 17 AT, CT 30S RIBOSOMAL PROTEIN S17 274
94 4V5J 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
95 4V7Y 17 AQ, CQ 30S ribosomal protein S17 274
96 4V8E 47 BT, DT 30S RIBOSOMAL PROTEIN S17 274
97 4WZD 17 8A, 8I 30S ribosomal protein S17 274
98 4X66 17 Q 30S ribosomal protein S17 274
99 2UU9 17 Q 30S RIBOSOMAL PROTEIN S17 274
100 4V8Q 51 BQ 30S RIBOSOMAL PROTEIN S17 274
101 4W4G 17 QQ, XQ 30S ribosomal protein S17 274
102 4NXM 17 Q ribosomal protein S17 274
103 4V5L 17 AQ 30S RIBOSOMAL PROTEIN S17 274
104 4YPB 17 QQ, XQ 30S ribosomal protein S17 274
105 4V7X 17 AQ, CQ 30S ribosomal protein S17 274
106 4ZER 48 1q, 2q 30S ribosomal protein S17 274
107 4V7W 17 AQ, CQ 30S ribosomal protein S17 274
108 4WT1 17 8A, 8I 30S ribosomal protein S17 274
109 4WT8 17 AR, BR 30S ribosomal protein S17 274
110 5DOX 48 1q, 2q 30S ribosomal protein S17 274
111 4NXN 17 Q ribosomal protein S17 274
112 4LT8 17 QQ, XQ 30S ribosomal protein S17 274
113 4V51 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
114 4V7L 17 AQ, CQ 30S ribosomal protein S17 274
115 4V5R 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
116 4V8A 47 CQ, DQ 30S ribosomal protein S17 274
117 4V5K 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
118 4V5Q 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
119 4V7J 16 Aq, Bq 30S ribosomal protein S17 274
120 4V5C 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
121 4V5E 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
122 4L47 17 QQ, XQ 30S ribosomal protein S17 274
123 4V5P 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
124 4V5D 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
125 4V7Z 17 AQ, CQ 30S ribosomal protein S17 274
126 4V8X 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
127 4V5S 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
128 4V9I 17 AQ, CQ 30S Ribosomal protein S17 274
129 4V6G 17 AT, CT 30S RIBOSOMAL PROTEIN S17 274
130 4V8N 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
131 4V97 17 AQ, CQ 30S ribosomal protein S17 274
132 4V7M 17 AQ, CQ 30S ribosomal protein S17 274
133 4WSM 17 8A, 8I 30S ribosomal protein S17 274
134 4TUD 17 QQ, XQ 30S ribosomal protein S17 274
135 4V6A 17 AQ, CQ 30S ribosomal protein S17 274
136 4TUE 17 QQ, XQ 30S ribosomal protein S17 274
137 4TUA 17 QQ, XQ 30S ribosomal protein S17 274
138 4V7K 16 Aq, Bq 30S ribosomal protein S17 274
139 4YY3 17 Q 30S ribosomal protein S17 274
140 4TUC 17 QQ, XQ 30S ribosomal protein S17 274
141 4YHH 17 Q 30S ribosomal protein S17 274
142 4TUB 17 QQ, XQ 30S ribosomal protein S17 274
143 4P70 17 QQ, XQ 30S ribosomal protein S17 274
144 4V8U 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
145 4LSK 17 QQ, XQ 30S ribosomal protein S17 274
146 4P6F 17 QQ, XQ 30S ribosomal protein S17 274
147 4V5F 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
148 1VVJ 17 QQ, XQ 30S ribosomal protein S17 274
149 4LFZ 17 QQ, XQ 30S ribosomal protein S17 274
150 4OX9 17 Q 30S ribosomal protein S17 274
151 4V5A 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
152 4L71 17 QQ, XQ 30S ribosomal protein S17 274
153 4V8J 17 AQ, CQ 30S ribosomal protein S17 274
154 4LEL 17 QQ, XQ 30S ribosomal protein S17 274
155 4V9L 16 AQ, CQ 30S ribosomal protein S17 274
156 4V5G 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
157 4V8O 17 AQ 30S RIBOSOMAL PROTEIN S17 274
158 4V9M 16 AQ, CQ 30S ribosomal protein S17 274
159 4W29 16 AQ, CQ 30S ribosomal protein S17 274
160 4V5N 17 AQ 30S RIBOSOMAL PROTEIN S17 274
161 4V5M 17 AQ 30S RIBOSOMAL PROTEIN S17 274
162 4V68 11 AQ 30S ribosomal protein S17 274