Sequence Similarity Clusters for the Entities in PDB 4JI8

Entity #1 | Chains: A
16S rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 57 269 39
95 % 57 270 53 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.1
PDBFlex
90 % 57 270 58
70 % 57 270 69
50 % 75 428 26
40 % 75 428 38
30 % 81 535 32
Entity #11 | Chains: K
RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 57 271 35
95 % 57 271 49 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.7
PDBFlex
90 % 57 271 54
70 % 57 271 65
50 % 69 422 32
40 % 77 546 19
30 % 77 546 31
Entity #12 | Chains: L
RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 22931
95 % 57 278 39 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 57 278 44
70 % 69 426 18
50 % 69 439 24
40 % 69 439 36
30 % 69 439 56
Entity #13 | Chains: M
RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 57 272 33
95 % 57 272 46 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.7
PDBFlex
90 % 57 272 51
70 % 57 272 62
50 % 69 426 31
40 % 69 426 44
30 % 75 535 35
Entity #14 | Chains: N
RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 270 36
95 % 57 270 54
90 % 57 270 59
70 % 57 283 53
50 % 57 283 91
40 % 57 283 112
30 % 57 283 124
Entity #15 | Chains: O
RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 57 274 30
95 % 59 279 38 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 59 279 43
70 % 59 279 54
50 % 74 435 25
40 % 74 440 35
30 % 74 440 55
Entity #16 | Chains: P
RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 57 266 41
95 % 57 271 51 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 57 271 56
70 % 57 271 67
50 % 57 281 92
40 % 57 281 114
30 % 69 419 63
Entity #17 | Chains: Q
RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 49 178 59
95 % 57 265 56 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.6
PDBFlex
90 % 57 269 60
70 % 57 269 70
50 % 57 269 95
40 % 57 269 117
30 % 57 269 128
Entity #18 | Chains: R
RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 50 185 57
95 % 51 236 65 Flexibility: Low
Max RMSD: 8.4, Avg RMSD: 0.9
PDBFlex
90 % 51 236 69
70 % 51 236 81
50 % 51 236 114
40 % 51 236 137
30 % 51 236 145
Entity #19 | Chains: S
RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 58 274 29
95 % 58 274 42 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 0.9
PDBFlex
90 % 58 274 48
70 % 58 274 58
50 % 70 428 28
40 % 70 431 40
30 % 70 431 57
Entity #2 | Chains: B
RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 57 271 31
95 % 57 272 43 Flexibility: Low
Max RMSD: 9.2, Avg RMSD: 1.5
PDBFlex
90 % 57 272 49
70 % 57 272 59
50 % 69 415 34
40 % 69 420 45
30 % 69 420 61
Entity #20 | Chains: T
RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 56 219 51
95 % 57 270 52 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.7
PDBFlex
90 % 57 270 57
70 % 57 270 68
50 % 57 270 94
40 % 57 270 116
30 % 57 270 127
Entity #21 | Chains: U
RIBOSOMAL PROTEIN THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 57 261 43
95 % 57 261 59 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.5
PDBFlex
90 % 57 261 63
70 % 57 261 74
50 % 57 261 100
40 % 57 261 122
30 % 57 261 135
Entity #3 | Chains: C
RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 51 235 49
95 % 51 235 66 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 51 235 70
70 % 51 235 82
50 % 53 309 85
40 % 53 309 103
30 % 53 309 118
Entity #4 | Chains: D
RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 57 264 42
95 % 57 272 44 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.5
PDBFlex
90 % 57 272 50
70 % 57 272 60
50 % 69 423 29
40 % 69 428 42
30 % 69 428 58
Entity #5 | Chains: E
RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 57 271 34
95 % 57 271 48 Flexibility: Low
Max RMSD: 4.7, Avg RMSD: 0.6
PDBFlex
90 % 57 271 53
70 % 57 271 64
50 % 70 423 30
40 % 70 423 43
30 % 70 425 60
Entity #6 | Chains: F
RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 58 276 27
95 % 64 282 37 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 0.8
PDBFlex
90 % 64 282 42
70 % 64 282 52
50 % 64 282 90
40 % 64 282 111
30 % 76 362 93
Entity #7 | Chains: G
RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 58 275 28
95 % 58 276 41 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 0.9
PDBFlex
90 % 58 276 46
70 % 58 276 56
50 % 69 363 66
40 % 69 368 82
30 % 69 368 95
Entity #8 | Chains: H
RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 58 271 32
95 % 58 271 45 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.4
PDBFlex
90 % 58 275 47
70 % 58 275 57
50 % 72 428 27
40 % 73 434 37
30 % 80 551 30
Entity #9 | Chains: I
RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 53 180 69
95 % 57 271 50 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.8
PDBFlex
90 % 57 271 55
70 % 57 271 66
50 % 69 417 33
40 % 69 417 46
30 % 75 535 34

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4Y4O 48 1q, 2q 30S ribosomal protein S17 274
2 5J8B 50 q 30S ribosomal protein S17 274
3 4W2F 17 AQ, CQ 30S Ribosomal Protein S17 274
4 4Y4P 48 1q, 2q 30S ribosomal protein S17 274
5 5FDV 49 1q, 2q 30S ribosomal protein S17 274
6 5J4B 48 1q, 2q 30S ribosomal protein S17 274
7 4W2G 17 AQ, CQ 30S Ribosomal Protein S17 274
8 5W4K 48 1q, 2q 30S ribosomal protein S17 274
9 4LFB 17 Q ribosomal protein S17 274
10 1VY4 17 AQ, CQ 30S ribosomal protein S17 274
11 5FDU 48 1q, 2q 30S ribosomal protein S17 274
12 4W2I 17 AQ, CQ 30S Ribosomal Protein S17 274
13 1VY5 17 AQ, CQ 30S ribosomal protein S17 274
14 5HCQ 48 1q, 2q 30S ribosomal protein S17 274
15 4WQF 50 BQ, DQ 30S ribosomal protein S17 274
16 4W2H 17 AQ, CQ 30S Ribosomal Protein S17 274
17 4WPO 50 BQ, DQ 30S ribosomal protein S17 274
18 4V8I 17 AQ, CQ 30S Ribosomal Protein S17 274
19 4JI1 17 Q RIBOSOMAL PROTEIN S17 274
20 4Z3S 48 1q, 2q 30S ribosomal protein S17 274
21 5DOY 48 1q, 2q 30S Ribosomal Protein S17 274
22 5HD1 48 1q, 2q 30S ribosomal protein S17 274
23 4LF7 17 Q ribosomal protein S17 274
24 4LF8 17 Q ribosomal protein S17 274
25 4WSD 17 8A, 8I 30S ribosomal protein S17 274
26 4WQU 50 BQ, DQ 30S ribosomal protein S17 274
27 5E81 17 8A, 8I 30S ribosomal protein S17 274
28 4Z8C 48 1q, 2q 30S ribosomal protein S17 274
29 5HCR 48 1q, 2q 30S ribosomal protein S17 274
30 2UUB 17 Q 30S RIBOSOMAL PROTEIN S17 274
31 4JYA 17 Q 30S ribosomal protein S17 274
32 5IBB 17 8A, 8I 30S ribosomal protein S17 274
33 5J4C 48 1q, 2q 30S ribosomal protein S17 274
34 4KHP 17 Q 30S Ribosomal protein S17 274
35 4WRO 21 8I 30S ribosomal protein S17 274
36 4WQ1 17 8A, 8I 30S ribosomal protein S17 274
37 4LF9 17 Q ribosomal protein S17 274
38 4WQY 50 BQ, DQ 30S ribosomal protein S17 274
39 4WRA 17 8A, 8I 30S ribosomal protein S17 274
40 5IB7 17 8A, 8I 30S ribosomal protein S17 274
41 4X64 17 Q 30S ribosomal protein S17 274
42 5HCP 48 1q, 2q 30S ribosomal protein S17 274
43 4V9H 11 AQ 30S ribosomal protein S17 274
44 4V8D 17 AT, CT 30S RIBOSOMAL PROTEIN S17 274
45 4V90 17 AQ 30S RIBOSOMAL PROTEIN S17 274
46 4JI3 17 Q RIBOSOMAL PROTEIN S17 274
47 4WQR 17 8A, 8I 30S ribosomal protein S17 274
48 4JI6 17 Q RIBOSOMAL PROTEIN S17 274
49 4JI8 17 Q RIBOSOMAL PROTEIN S17 274
50 5IB8 17 8A, 8I 30S ribosomal protein S17 274
51 4V9R 17 AQ, CQ 30S Ribosomal Protein S17 274
52 5EL6 17 8A, 8I 30S ribosomal protein S17 274
53 5EL7 17 8A, 8I 30S ribosomal protein S17 274
54 5VP2 48 1q, 2q 30S ribosomal protein S17 274
55 4LF4 17 Q ribosomal protein S17 274
56 5DFE 51 QQ, XQ 30S ribosomal protein S17 274
57 4LF6 17 Q ribosomal protein S17 274
58 4JI7 17 Q RIBOSOMAL PROTEIN S17 274
59 4WU1 17 8A, 8I 30S ribosomal protein S17 274
60 5EL4 17 8A, 8I 30S ribosomal protein S17 274
61 4WR6 17 8A, 8I 30S ribosomal protein S17 274
62 4V8B 17 AT, CT 30S RIBOSOMAL PROTEIN S17 274
63 5HAU 50 1q, 2q 30S ribosomal protein S17 274
64 2UUA 17 Q 30S RIBOSOMAL PROTEIN S17 274
65 4V87 47 BT, CT 30S RIBOSOMAL PROTEIN S17 274
66 4V95 17 AQ, CQ 30S Ribosomal Protein S17 274
67 1VY7 17 AQ, CQ 30S ribosomal protein S17 274
68 5E7K 17 8A, 8I 30S ribosomal protein S17 274
69 5EL5 17 8A, 8I 30S ribosomal protein S17 274
70 4LNT 17 QQ, XQ 30S ribosomal protein S17 274
71 4LFA 17 Q ribosomal protein S17 274
72 4YZV 17 QQ, XQ 30S ribosomal protein S17 274
73 4JI0 17 Q ribosomal protein S17 274
74 5IWA 16 Q 30S ribosomal protein S17 274
75 4V9S 17 AQ, CQ 30S Ribosomal Protein S17 274
76 4JI2 17 Q RIBOSOMAL PROTEIN S17 274
77 4JV5 17 Q 30S ribosomal protein S17 274
78 4X65 17 Q 30S ribosomal protein S17 274
79 4V8G 17 AQ, CQ 30S Ribosomal Protein S17 274
80 2UUC 17 Q 30S RIBOSOMAL PROTEIN S17 274
81 4LFC 17 Q ribosomal protein S17 274
82 4WZO 17 8A, 8I 30S ribosomal protein S17 274
83 4JI4 17 Q RIBOSOMAL PROTEIN S17 274
84 1VY6 17 AQ, CQ 30S ribosomal protein S17 274
85 4V9B 17 AT, CT 30S RIBOSOMAL PROTEIN S17 274
86 4V6F 47 BT, CT 30S ribosomal protein S17 274
87 4X62 17 Q 30S ribosomal protein S17 274
88 4V8F 47 BT, CT 30S RIBOSOMAL PROTEIN S17 274
89 5F8K 48 1q, 2q 30S ribosomal protein S17 274
90 4V8H 17 AQ, CQ 30S Ribosomal Protein S17 274
91 4JI5 17 Q RIBOSOMAL PROTEIN S17 274
92 4K0K 17 Q 30S ribosomal protein S17 274
93 4W2E 50 q 30S ribosomal protein S17 274
94 4V8C 47 CT, DT 30S RIBOSOMAL PROTEIN S17 274
95 4LF5 17 Q ribosomal protein S17 274
96 4V9A 17 AT, CT 30S RIBOSOMAL PROTEIN S17 274
97 4V5J 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
98 4V7Y 17 AQ, CQ 30S ribosomal protein S17 274
99 4V8E 47 BT, DT 30S RIBOSOMAL PROTEIN S17 274
100 5J30 48 QQ, XQ 30S ribosomal protein S17 274
101 4WZD 17 8A, 8I 30S ribosomal protein S17 274
102 4X66 17 Q 30S ribosomal protein S17 274
103 2UU9 17 Q 30S RIBOSOMAL PROTEIN S17 274
104 4V8Q 51 BQ 30S RIBOSOMAL PROTEIN S17 274
105 4W4G 17 QQ, XQ 30S ribosomal protein S17 274
106 4NXM 17 Q ribosomal protein S17 274
107 4V5L 17 AQ 30S RIBOSOMAL PROTEIN S17 274
108 4YPB 17 QQ, XQ 30S ribosomal protein S17 274
109 4V7X 17 AQ, CQ 30S ribosomal protein S17 274
110 4ZER 48 1q, 2q 30S ribosomal protein S17 274
111 4V7W 17 AQ, CQ 30S ribosomal protein S17 274
112 4WT1 17 8A, 8I 30S ribosomal protein S17 274
113 4WT8 17 AR, BR 30S ribosomal protein S17 274
114 5DOX 48 1q, 2q 30S ribosomal protein S17 274
115 4NXN 17 Q ribosomal protein S17 274
116 4LT8 17 QQ, XQ 30S ribosomal protein S17 274
117 4V51 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
118 4V7L 17 AQ, CQ 30S ribosomal protein S17 274
119 4V5R 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
120 4V8A 47 CQ, DQ 30S ribosomal protein S17 274
121 4V5K 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
122 4V5Q 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
123 4V7J 16 Aq, Bq 30S ribosomal protein S17 274
124 5J3C 48 QQ, XQ 30S ribosomal protein S17 274
125 4V5C 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
126 4V5E 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
127 4L47 17 QQ, XQ 30S ribosomal protein S17 274
128 4V5P 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
129 4ZSN 17 QQ, XQ 30S ribosomal protein S17 274
130 4V5D 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
131 4V7Z 17 AQ, CQ 30S ribosomal protein S17 274
132 4V8X 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
133 4V5S 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
134 4V9I 17 AQ, CQ 30S Ribosomal protein S17 274
135 4V6G 17 AT, CT 30S RIBOSOMAL PROTEIN S17 274
136 4V8N 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
137 4V97 17 AQ, CQ 30S ribosomal protein S17 274
138 4V7M 17 AQ, CQ 30S ribosomal protein S17 274
139 4WSM 17 8A, 8I 30S ribosomal protein S17 274
140 4TUD 17 QQ, XQ 30S ribosomal protein S17 274
141 4V6A 17 AQ, CQ 30S ribosomal protein S17 274
142 4TUE 17 QQ, XQ 30S ribosomal protein S17 274
143 4TUA 17 QQ, XQ 30S ribosomal protein S17 274
144 4V7K 16 Aq, Bq 30S ribosomal protein S17 274
145 4YY3 17 Q 30S ribosomal protein S17 274
146 4TUC 17 QQ, XQ 30S ribosomal protein S17 274
147 4YHH 17 Q 30S ribosomal protein S17 274
148 4TUB 17 QQ, XQ 30S ribosomal protein S17 274
149 4P70 17 QQ, XQ 30S ribosomal protein S17 274
150 4V8U 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
151 4LSK 17 QQ, XQ 30S ribosomal protein S17 274
152 4P6F 17 QQ, XQ 30S ribosomal protein S17 274
153 4V5F 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
154 1VVJ 17 QQ, XQ 30S ribosomal protein S17 274
155 4LFZ 17 QQ, XQ 30S ribosomal protein S17 274
156 5CZP 48 QQ, XQ 30S ribosomal protein S17 274
157 4OX9 17 Q 30S ribosomal protein S17 274
158 4V5A 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
159 4L71 17 QQ, XQ 30S ribosomal protein S17 274
160 4V8J 17 AQ, CQ 30S ribosomal protein S17 274
161 4LEL 17 QQ, XQ 30S ribosomal protein S17 274
162 4V9L 16 AQ, CQ 30S ribosomal protein S17 274
163 4V5G 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 274
164 4V8O 17 AQ 30S RIBOSOMAL PROTEIN S17 274
165 4V9M 16 AQ, CQ 30S ribosomal protein S17 274
166 4W29 16 AQ, CQ 30S ribosomal protein S17 274
167 5LMN 17 Q 30S ribosomal protein S17 Q5SHP7 274
168 5LMO 17 Q 30S ribosomal protein S17 274
169 5LMP 17 Q 30S ribosomal protein S17 274
170 5LMQ 17 Q 30S ribosomal protein S17 274
171 5LMR 17 Q 30S ribosomal protein S17 274
172 5LMS 17 Q 30S ribosomal protein S17 274
173 5LMT 17 Q 30S ribosomal protein S17 274
174 5LMU 17 Q 30S ribosomal protein S17 274
175 5LMV 17 Q 30S ribosomal protein S17 274
176 4V5N 17 AQ 30S RIBOSOMAL PROTEIN S17 274
177 4V5M 17 AQ 30S RIBOSOMAL PROTEIN S17 274
178 4V68 11 AQ 30S ribosomal protein S17 274