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Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Sequence Clustering and Redundancy Reduction Results
4JI8
Cluster # 66 Members. Sequence cutoff: 100% Cluster size: 112 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4Y4O 48 1q, 2q 30S ribosomal protein S17 300852  
2 4W2F 17 AQ, CQ 30S Ribosomal Protein S17 300852  
3 4Y4P 48 1q, 2q 30S ribosomal protein S17 300852  
4 4W2G 17 AQ, CQ 30S Ribosomal Protein S17 300852  
5 4LFB 17 Q ribosomal protein S17 300852  
6 1VY4 17 AQ, CQ 30S ribosomal protein S17 300852  
7 4W2I 17 AQ, CQ 30S Ribosomal Protein S17 300852  
8 1VY5 17 AQ, CQ 30S ribosomal protein S17 300852  
9 4WQF 50 BQ, DQ 30S ribosomal protein S17 300852  
10 4W2H 17 AQ, CQ 30S Ribosomal Protein S17 300852  
11 4WPO 50 BQ, DQ 30S ribosomal protein S17 300852  
12 4V8I 17 AQ, CQ 30S Ribosomal Protein S17 274  
13 4JI1 17 Q RIBOSOMAL PROTEIN S17 300852  
14 4LF7 17 Q ribosomal protein S17 300852  
15 4LF8 17 Q ribosomal protein S17 300852  
16 4WQU 50 BQ, DQ 30S ribosomal protein S17 300852  
17 2UUB 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
18 4JYA 17 Q 30S ribosomal protein S17 300852  
19 4KHP 17 Q 30S Ribosomal protein S17 300852  
20 4LF9 17 Q ribosomal protein S17 300852  
21 4WQY 50 BQ, DQ 30S ribosomal protein S17 300852  
22 4V9H 11 AQ 30S ribosomal protein S17 300852  
23 4V8D 17 AT, CT 30S RIBOSOMAL PROTEIN S17 300852  
24 4V90 17 AQ 30S RIBOSOMAL PROTEIN S17 300852  
25 4JI3 17 Q RIBOSOMAL PROTEIN S17 300852  
26 4JI6 17 Q RIBOSOMAL PROTEIN S17 300852  
27 4JI8 17 Q RIBOSOMAL PROTEIN S17 300852  
28 4V9R 17 AQ, CQ 30S Ribosomal Protein S17 274  
29 4LF4 17 Q ribosomal protein S17 300852  
30 4LF6 17 Q ribosomal protein S17 300852  
31 4JI7 17 Q RIBOSOMAL PROTEIN S17 300852  
32 4V8B 17 AT, CT 30S RIBOSOMAL PROTEIN S17 300852  
33 2UUA 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
34 4V87 47 BT, CT 30S RIBOSOMAL PROTEIN S17 300852  
35 4V95 17 AQ, CQ 30S Ribosomal Protein S17 274  
36 1VY7 17 AQ, CQ 30S ribosomal protein S17 300852  
37 4LNT 17 QQ, XQ 30S ribosomal protein S17 300852  
38 4LFA 17 Q ribosomal protein S17 300852  
39 4JI0 17 Q ribosomal protein S17 300852  
40 4V9S 17 AQ, CQ 30S Ribosomal Protein S17 274  
41 4JI2 17 Q RIBOSOMAL PROTEIN S17 300852  
42 4JV5 17 Q 30S ribosomal protein S17 300852  
43 4V8G 17 AQ, CQ 30S Ribosomal Protein S17 300852  
44 2UUC 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
45 4LFC 17 Q ribosomal protein S17 300852  
46 4JI4 17 Q RIBOSOMAL PROTEIN S17 300852  
47 1VY6 17 AQ, CQ 30S ribosomal protein S17 300852  
48 4V9B 17 AT, CT 30S RIBOSOMAL PROTEIN S17 300852  
49 4V6F 47 BT, CT 30S ribosomal protein S17 300852  
50 4V8F 47 BT, CT 30S RIBOSOMAL PROTEIN S17 300852  
51 4V8H 17 AQ, CQ 30S Ribosomal Protein S17 300852  
52 4JI5 17 Q RIBOSOMAL PROTEIN S17 300852  
53 4K0K 17 Q 30S ribosomal protein S17 300852  
54 4W2E 50 q 30S ribosomal protein S17 300852  
55 4V8C 47 CT, DT 30S RIBOSOMAL PROTEIN S17 300852  
56 4LF5 17 Q ribosomal protein S17 300852  
57 4V9A 17 AT, CT 30S RIBOSOMAL PROTEIN S17 300852  
58 4V5J 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 300852  
59 4V7Y 17 AQ, CQ 30S ribosomal protein S17 300852  
60 4V8E 47 BT, DT 30S RIBOSOMAL PROTEIN S17 300852  
61 2UU9 17 Q 30S RIBOSOMAL PROTEIN S17 300852  
62 4V8Q 51 BQ 30S RIBOSOMAL PROTEIN S17 300852  
63 4NXM 17 Q ribosomal protein S17 300852  
64 4V5L 17 AQ 30S RIBOSOMAL PROTEIN S17 300852  
65 4V7X 17 AQ, CQ 30S ribosomal protein S17 300852  
66 4V7W 17 AQ, CQ 30S ribosomal protein S17 300852  
67 4WUS 18 R 30S ribosomal protein S17 300852  
68 4WT8 17 R 30S ribosomal protein S17 300852  
69 4NXN 17 Q ribosomal protein S17 300852  
70 4LT8 17 QQ, XQ 30S ribosomal protein S17 300852  
71 4V51 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 300852  
72 4V7L 17 AQ, CQ 30S ribosomal protein S17 300852  
73 4V5R 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 300852  
74 4V8A 47 CQ, DQ 30S ribosomal protein S17 300852  
75 4V5K 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 300852  
76 4V5Q 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 300852  
77 4V7J 16 Aq, Bq 30S ribosomal protein S17 300852  
78 4V5C 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 300852  
79 4V5E 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 300852  
80 4L47 17 QQ, XQ 30S ribosomal protein S17 300852  
81 4V5P 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 300852  
82 4V5D 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 300852  
83 4V7Z 17 AQ, CQ 30S ribosomal protein S17 300852  
84 4V8X 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 300852  
85 4V5S 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 300852  
86 4V9I 17 AQ, CQ 30S Ribosomal protein S17 300852  
87 4V6G 17 AT, CT 30S RIBOSOMAL PROTEIN S17 300852  
88 4V8N 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 300852  
89 4V97 17 AQ, CQ 30S ribosomal protein S17 300852  
90 4V7M 17 AQ, CQ 30S ribosomal protein S17 300852  
91 4V6A 17 AQ, CQ 30S ribosomal protein S17 300852  
92 4V7K 16 Aq, Bq 30S ribosomal protein S17 300852  
93 4P70 17 QQ, XQ 30S ribosomal protein S17 300852  
94 4V8U 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 300852  
95 4LSK 17 QQ, XQ 30S ribosomal protein S17 300852  
96 4P6F 17 QQ, XQ 30S ribosomal protein S17 300852  
97 4V5F 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 300852  
98 1VVJ 17 QQ, XQ 30S ribosomal protein S17 300852  
99 4LFZ 17 QQ, XQ 30S ribosomal protein S17 300852  
100 4OX9 17 Q 30S ribosomal protein S17 300852  
101 4V5A 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 300852  
102 4L71 17 QQ, XQ 30S ribosomal protein S17 300852  
103 4V8J 17 AQ, CQ 30S ribosomal protein S17 300852  
104 4LEL 17 QQ, XQ 30S ribosomal protein S17 300852  
105 4V9L 16 AQ, CQ 30S ribosomal protein S17 262724  
106 4V5G 17 AQ, CQ 30S RIBOSOMAL PROTEIN S17 300852  
107 4V8O 17 AQ 30S RIBOSOMAL PROTEIN S17 300852  
108 4V9M 16 AQ, CQ 30S ribosomal protein S17 262724  
109 4W29 16 AQ, CQ 30S ribosomal protein S17 262724  
110 4V5N 17 AQ 30S RIBOSOMAL PROTEIN S17 300852  
111 4V5M 17 AQ 30S RIBOSOMAL PROTEIN S17 300852  
112 4V68 11 AQ 30S ribosomal protein S17 274  
 
Sequence Clusters for the Sequence Entities in PDB 4JI8
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 196 28
95% 35 197 44
90% 35 197 46
70% 35 197 58
50% 46 280 35
40% 46 280 45
30% 51 331 46
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 198 24
95% 35 198 40
90% 35 198 42
70% 35 198 54
50% 40 274 42
40% 47 330 35
30% 47 330 47
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 17888
95% 35 205 31
90% 35 205 33
70% 40 286 24
50% 40 286 34
40% 40 286 44
30% 40 286 69
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 199 21
95% 35 199 37
90% 35 199 39
70% 35 199 51
50% 40 279 39
40% 40 279 51
30% 45 331 49
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 197 25
95% 35 197 45
90% 35 197 47
70% 35 197 59
50% 35 197 92
40% 35 197 114
30% 35 197 137
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 201 19
95% 37 206 30
90% 37 206 32
70% 37 206 43
50% 45 287 33
40% 45 287 43
30% 45 287 68
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 193 29
95% 35 198 42
90% 35 198 44
70% 35 198 56
50% 35 198 90
40% 35 198 112
30% 40 277 75
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 112 66
95% 35 192 49
90% 35 196 48
70% 35 196 60
50% 35 196 93
40% 35 196 116
30% 35 196 139
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 125 58
95% 32 174 71
90% 32 174 75
70% 32 174 88
50% 32 174 128
40% 32 174 146
30% 32 174 164
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 176 45
95% 33 176 67
90% 33 176 70
70% 33 176 83
50% 41 277 38
40% 41 277 48
30% 41 277 72
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 198 22
95% 35 199 34
90% 35 199 37
70% 35 199 48
50% 35 199 88
40% 40 274 53
30% 40 274 74
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 148 54
95% 35 197 43
90% 35 197 45
70% 35 197 57
50% 35 197 91
40% 35 197 113
30% 35 197 136
Entity #21: Chains: U - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 188 31
95% 35 188 51
90% 35 188 54
70% 35 188 66
50% 35 188 111
40% 35 188 133
30% 35 188 153
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 173 48
95% 32 173 72
90% 32 173 76
70% 32 173 90
50% 33 213 75
40% 33 213 102
30% 33 213 122
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 191 30
95% 35 199 35
90% 35 199 38
70% 35 199 49
50% 40 274 40
40% 40 275 52
30% 40 275 73
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 198 23
95% 35 198 39
90% 35 198 41
70% 35 198 53
50% 41 278 37
40% 41 278 47
30% 41 280 71
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 203 17
95% 42 209 29
90% 42 209 31
70% 42 209 42
50% 42 209 80
40% 42 209 106
30% 48 247 87
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 202 18
95% 36 203 32
90% 36 203 34
70% 36 203 45
50% 41 245 53
40% 41 246 70
30% 41 246 94
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 198 20
95% 36 198 36
90% 36 202 35
70% 36 202 46
50% 43 280 36
40% 44 282 46
30% 50 335 44
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 108 87
95% 35 198 41
90% 35 198 43
70% 35 198 55
50% 40 274 41
40% 40 274 54
30% 45 326 51
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.