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Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Sequence Clustering and Redundancy Reduction Results
4JI8
Cluster # 109 Members. Sequence cutoff: 40% Cluster size: 207 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4Y4O 47 1p, 2p 30S ribosomal protein S16 300852  
2 4W2F 16 AP, CP 30S Ribosomal Protein S16 300852  
3 4Y4P 47 1p, 2p 30S ribosomal protein S16 300852  
4 4W2G 16 AP, CP 30S Ribosomal Protein S16 300852  
5 4LFB 16 P ribosomal protein S16 300852  
6 1VY4 16 AP, CP 30S ribosomal protein S16 300852  
7 4W2I 16 AP, CP 30S Ribosomal Protein S16 300852  
8 1VY5 16 AP, CP 30S ribosomal protein S16 300852  
9 4WQF 49 BP, DP 30S ribosomal protein S16 300852  
10 4W2H 16 AP, CP 30S Ribosomal Protein S16 300852  
11 4WPO 49 BP, DP 30S ribosomal protein S16 300852  
12 4V8I 16 AP, CP 30S Ribosomal Protein S16 274  
13 4JI1 16 P RIBOSOMAL PROTEIN S16 300852  
14 4DR6 16 P 30S ribosomal protein S16 300852  
15 4LF7 16 P ribosomal protein S16 300852  
16 4LF8 16 P ribosomal protein S16 300852  
17 4WQU 49 BP, DP 30S ribosomal protein S16 300852  
18 2VQE 16 P 30S RIBOSOMAL PROTEIN S16 300852  
19 4Z8C 47 1p, 2p 30S ribosomal protein S16 300852  
20 2UUB 16 P 30S RIBOSOMAL PROTEIN S16 300852  
21 4DV6 16 P ribosomal protein S16 300852  
22 4JYA 16 P 30S ribosomal protein S16 300852  
23 4DR5 16 P 30S ribosomal protein S16 300852  
24 4KHP 16 P 30S Ribosomal protein S16 300852  
25 4DR2 16 P 30S ribosomal protein S16 300852  
26 4LF9 16 P ribosomal protein S16 300852  
27 4WQY 49 BP, DP 30S ribosomal protein S16 300852  
28 4DUY 16 P ribosomal protein S16 300852  
29 4DV7 16 P ribosomal protein S16 300852  
30 4V9H 10 AP 30S ribosomal protein S16 300852  
31 4V8D 16 AS, CS 30S RIBOSOMAL PROTEIN S16 300852  
32 4DR3 16 P 30S ribosomal protein S16 300852  
33 4V90 16 AP 30S RIBOSOMAL PROTEIN S16 300852  
34 4JI3 16 P RIBOSOMAL PROTEIN S16 300852  
35 4JI6 16 P RIBOSOMAL PROTEIN S16 300852  
36 4JI8 16 P RIBOSOMAL PROTEIN S16 300852  
37 2UXC 16 P RIBOSOMAL PROTEIN S16 300852  
38 4V9R 16 AP, CP 30S Ribosomal Protein S16 274  
39 4B3M 16 P 30S RIBOSOMAL PROTEIN S16 300852  
40 4LF4 16 P ribosomal protein S16 300852  
41 4LF6 16 P ribosomal protein S16 300852  
42 4JI7 16 P RIBOSOMAL PROTEIN S16 300852  
43 4B3T 16 P 30S RIBOSOMAL PROTEIN S16 300852  
44 4V8B 16 AS, CS 30S RIBOSOMAL PROTEIN S16 300852  
45 2VQF 16 P 30S RIBOSOMAL PROTEIN S16 300852  
46 2UUA 16 P 30S RIBOSOMAL PROTEIN S16 300852  
47 4V87 46 BS, CS 30S RIBOSOMAL PROTEIN S16 300852  
48 4V95 16 AP, CP 30S Ribosomal Protein S16 274  
49 1VY7 16 AP, CP 30S ribosomal protein S16 300852  
50 4B3R 16 P 30S RIBOSOMAL PROTEIN S16 300852  
51 4LNT 16 QP, XP 30S ribosomal protein S16 300852  
52 4DR1 16 P 30S ribosomal protein S16 300852  
53 4LFA 16 P ribosomal protein S16 300852  
54 4DV4 16 P ribosomal protein S16 300852  
55 4JI0 16 P ribosomal protein S16 300852  
56 4V9S 16 AP, CP 30S Ribosomal Protein S16 274  
57 4JI2 16 P RIBOSOMAL PROTEIN S16 300852  
58 4JV5 16 P 30S ribosomal protein S16 300852  
59 4DR7 16 P 30S ribosomal protein S16 300852  
60 1J5E 16 P 30S RIBOSOMAL PROTEIN S16 274  
61 4GKK 16 P 30S ribosomal protein S16 300852  
62 4DUZ 16 P ribosomal protein S16 300852  
63 4V8G 16 AP, CP 30S Ribosomal Protein S16 300852  
64 4GKJ 16 P 30S ribosomal protein S16 300852  
65 4DV3 16 P ribosomal protein S16 300852  
66 4DV5 16 P ribosomal protein S16 300852  
67 2UUC 16 P 30S RIBOSOMAL PROTEIN S16 300852  
68 4LFC 16 P ribosomal protein S16 300852  
69 1FJG 17 P 30S RIBOSOMAL PROTEIN S16 274  
70 3T1Y 16 P 30S ribosomal protein S16 300852  
71 4JI4 16 P RIBOSOMAL PROTEIN S16 300852  
72 1VY6 16 AP, CP 30S ribosomal protein S16 300852  
73 1XMQ 18 P 30S Ribosomal Protein S16 274  
74 4DV0 16 P ribosomal protein S16 300852  
75 4V9B 16 AS, CS 30S RIBOSOMAL PROTEIN S16 300852  
76 4V6F 46 BS, CS 30S ribosomal protein S16 300852  
77 4V8F 46 BS, CS 30S RIBOSOMAL PROTEIN S16 300852  
78 4B3S 16 P 30S RIBOSOMAL PROTEIN S16 300852  
79 4DV2 16 P ribosomal protein S16 300852  
80 4DV1 16 P ribosomal protein S16 300852  
81 1N32 18 P 30S RIBOSOMAL PROTEIN S16 274  
82 1I94 16 P 30S RIBOSOMAL PROTEIN S16 274  
83 4V8H 16 AP, CP 30S Ribosomal Protein S16 300852  
84 4JI5 16 P RIBOSOMAL PROTEIN S16 300852  
85 4K0K 16 P 30S ribosomal protein S16 300852  
86 4W2E 49 p 30S ribosomal protein S16 300852  
87 4V8C 46 CS, DS 30S RIBOSOMAL PROTEIN S16 300852  
88 4LF5 16 P ribosomal protein S16 300852  
89 4V9A 16 AS, CS 30S RIBOSOMAL PROTEIN S16 300852  
90 4V5J 16 AP, CP 30S RIBOSOMAL PROTEIN S16 300852  
91 4V7Y 16 AP, CP 30S ribosomal protein S16 300852  
92 4V8E 46 BS, DS 30S RIBOSOMAL PROTEIN S16 300852  
93 4DR4 16 P 30S ribosomal protein S16 300852  
94 3OTO 16 P 30S RIBOSOMAL PROTEIN S16 300852  
95 2UU9 16 P 30S RIBOSOMAL PROTEIN S16 300852  
96 4V8Q 50 BP 30S RIBOSOMAL PROTEIN S16 300852  
97 1HR0 17 P 30S RIBOSOMAL PROTEIN S16 274  
98 4AQY 16 P 30S RIBOSOMAL PROTEIN S16 274  
99 4NXM 16 P ribosomal protein S16 300852  
100 4V5L 16 AP 30S RIBOSOMAL PROTEIN S16 RESIDUES 1-17 AND 21-91 300852  
101 4V7X 16 AP, CP 30S ribosomal protein S16 300852  
102 4ZER 47 1p, 2p 30S ribosomal protein S16 300852  
103 1IBL 19 P 30S RIBOSOMAL PROTEIN S16 274  
104 4V7W 16 AP, CP 30S ribosomal protein S16 300852  
105 4WUS 17 P 30S ribosomal protein S16 300852  
106 4WT8 16 P 30S ribosomal protein S16 300852  
107 4NXN 16 P ribosomal protein S16 300852  
108 1XNR 18 P 16S Ribosomal protein S16 274  
109 4LT8 16 QP, XP 30S ribosomal protein S16 300852  
110 4V51 16 AP, CP 30S RIBOSOMAL PROTEIN S16 300852  
111 4V7L 16 AP, CP 30S ribosomal protein S16 300852  
112 4V5R 16 AP, CP 30S RIBOSOMAL PROTEIN S16 300852  
113 1HNZ 17 P 30S RIBOSOMAL PROTEIN S16 274  
114 1XNQ 18 P Ribosomal protein S16 274  
115 4V8A 46 CP, DP 30S ribosomal protein S16 300852  
116 4V5K 16 AP, CP 30S RIBOSOMAL PROTEIN S16 300852  
117 4V5Q 16 AP, CP 30S RIBOSOMAL PROTEIN S16 300852  
118 4V7J 15 Ap, Bp 30S ribosomal protein S16 300852  
119 4V5C 16 AP, CP 30S RIBOSOMAL PROTEIN S16 300852  
120 4V5E 16 AP, CP 30S RIBOSOMAL PROTEIN S16 300852  
121 4L47 16 QP, XP 30S ribosomal protein S16 300852  
122 4V5P 16 AP, CP 30S RIBOSOMAL PROTEIN S16 300852  
123 4V5D 16 AP, CP 30S RIBOSOMAL PROTEIN S16 300852  
124 4V7Z 16 AP, CP 30S ribosomal protein S16 300852  
125 4V8X 16 AP, CP 30S RIBOSOMAL PROTEIN S16 300852  
126 4V5S 16 AP, CP 30S RIBOSOMAL PROTEIN S16 300852  
127 4V9I 16 AP, CP 30S Ribosomal protein S16 300852  
128 1XMO 18 P 30S ribosomal protein S16 274  
129 3T1H 16 P 30S ribosomal protein S16 300852  
130 2UXD 16 P RIBOSOMAL PROTEIN S16 300852  
131 1N33 18 P 30S RIBOSOMAL PROTEIN S16 274  
132 1IBK 17 P 30S RIBOSOMAL PROTEIN S16 274  
133 4V6G 16 AS, CS 30S RIBOSOMAL PROTEIN S16 300852  
134 4V8N 16 AP, CP 30S RIBOSOMAL PROTEIN S16 300852  
135 4V97 16 AP, CP 30S ribosomal protein S16 300852  
136 1HNW 17 P 30S RIBOSOMAL PROTEIN S16 274  
137 4V7M 16 AP, CP 30S ribosomal protein S16 300852  
138 4TUD 16 QP, XP 30S ribosomal protein S16 300852  
139 1IBM 19 P 30S RIBOSOMAL PROTEIN S16 274  
140 4V6A 16 AP, CP 30S ribosomal protein S16 300852  
141 4TUE 16 QP, XP 30S ribosomal protein S16 300852  
142 4TUA 16 QP, XP 30S ribosomal protein S16 300852  
143 4V84 16 AP, CP 30S ribosomal protein S16 262724  
144 4V7K 15 Ap, Bp 30S ribosomal protein S16 300852  
145 1HNX 17 P 30S RIBOSOMAL PROTEIN S16 274  
146 4V9Q 46 BP, DP 30S ribosomal protein S16 262724  
147 4TUC 16 QP, XP 30S ribosomal protein S16 300852  
148 4YHH 16 P 30S ribosomal protein S16 262724  
149 4TUB 16 QP, XP 30S ribosomal protein S16 300852  
150 4V9N 19 AP, CP 30S ribosomal protein S16 262724  
151 4P70 16 QP, XP 30S ribosomal protein S16 300852  
152 4V8U 16 AP, CP 30S RIBOSOMAL PROTEIN S16 300852  
153 4LSK 16 QP, XP 30S ribosomal protein S16 300852  
154 4P6F 16 QP, XP 30S ribosomal protein S16 300852  
155 4V67 18 AP, CP 30S ribosomal protein S16 274  
156 4V83 16 AP, CP 30S ribosomal protein S16 262724  
157 4V5F 16 AP, CP 30S RIBOSOMAL PROTEIN S16 300852  
158 1VVJ 16 QP, XP 30S ribosomal protein S16 300852  
159 4LFZ 16 QP, XP 30S ribosomal protein S16 300852  
160 2E5L 17 P 30S ribosomal protein S16 274  
161 2HHH 16 P 30S ribosomal protein S16 300852  
162 4OX9 16 P 30S ribosomal protein S16 300852  
163 2UXB 16 P RIBOSOMAL PROTEIN S16 300852  
164 1I96 16 P 30S RIBOSOMAL PROTEIN S16 274  
165 4V9K 15 AP, CP 30S ribosomal protein S16 262724  
166 1N34 17 P 30S RIBOSOMAL PROTEIN S16 274  
167 4V5A 16 AP, CP 30S RIBOSOMAL PROTEIN S16 300852  
168 4V63 18 AP, CP 30S ribosomal protein S16 262724  
169 4L71 16 QP, XP 30S ribosomal protein S16 300852  
170 4KVB 16 P 30S ribosomal protein S16 262724  
171 4XEJ 43 AS16, BS16 30S ribosomal protein S16 262724  
172 4V7P 16 AP, DP 30S ribosomal protein S16 262724  
173 4V8J 16 AP, CP 30S ribosomal protein S16 300852  
174 1N36 16 P 30S RIBOSOMAL PROTEIN S16 274  
175 2ZM6 16 P 30S ribosomal protein S16 274  
176 4LEL 16 QP, XP 30S ribosomal protein S16 300852  
177 2F4V 17 P 30S ribosomal protein S16 274  
178 4V9L 15 AP, CP 30S ribosomal protein S16 262724  
179 4V5G 16 AP, CP 30S RIBOSOMAL PROTEIN S16 300852  
180 1I97 16 P 30S RIBOSOMAL PROTEIN S16 274  
181 4V9J 15 AP, CP 30S ribosomal protein S16 262724  
182 1I95 16 P 30S RIBOSOMAL PROTEIN S16 274  
183 4V8O 16 AP 30S RIBOSOMAL PROTEIN S16 300852  
184 4V9M 15 AP, CP 30S ribosomal protein S16 262724  
185 4W29 15 AP, CP 30S ribosomal protein S16 262724  
186 4V4Y 18 AS 30S ribosomal protein S16 300852  
187 4V4J 49 q 30S ribosomal protein S16 262724  
188 4V4X 18 AS 30S ribosomal protein S16 300852  
189 4V4Z 19 AS 30S ribosomal protein S16 300852  
190 4V4I 49 q 30S ribosomal protein S16 262724  
191 4V4P 51 BS 30S ribosomal protein S16 300852  
192 4V4R 19 AP 30S ribosomal protein S16 300852  
193 4V4S 19 AP 30S ribosomal protein S16 300852  
194 4V4T 19 AP 30S ribosomal protein S16 300852  
195 4V49 18 AP 30S ribosomal protein S16 562  
196 4V4A 16 AP 30S ribosomal protein S16 562  
197 4V4G 16 AP, CP, EP, GP, IP 30S ribosomal protein S16 562  
198 3J9W 16 AP 30S ribosomal protein bS16 224308  
199 4V5N 16 AP 30S RIBOSOMAL PROTEIN S16 300852  
200 4V5M 16 AP 30S RIBOSOMAL PROTEIN S16 300852  
201 4V68 10 AP 30S ribosomal protein S16 274  
202 1ML5 21 S 30S RIBOSOMAL PROTEIN S16 562  
203 1JGO 19 S 30S RIBOSOMAL PROTEIN S16 274  
204 1JGP 19 S 30S RIBOSOMAL PROTEIN S16 274  
205 1JGQ 19 S 30S RIBOSOMAL PROTEIN S16 274  
206 4V42 19 AS 30S RIBOSOMAL PROTEIN S16 274  
207 1EMW 1 A S16 RIBOSOMAL PROTEIN 274  
 
Sequence Clusters for the Sequence Entities in PDB 4JI8
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 204 25
95% 36 205 45
90% 36 205 47
70% 36 205 57
50% 47 290 35
40% 47 290 45
30% 52 342 46
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 206 23
95% 36 206 41
90% 36 206 43
70% 36 206 52
50% 41 284 41
40% 48 343 34
30% 48 344 45
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 18113
95% 36 213 32
90% 36 213 35
70% 41 295 24
50% 41 296 34
40% 41 296 44
30% 41 296 67
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 207 20
95% 36 207 39
90% 36 207 41
70% 36 207 50
50% 41 289 39
40% 41 289 49
30% 46 343 48
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 205 24
95% 36 205 46
90% 36 205 48
70% 36 206 55
50% 36 206 85
40% 36 206 110
30% 36 206 129
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 209 18
95% 38 214 30
90% 38 214 33
70% 38 214 43
50% 46 297 33
40% 46 298 43
30% 46 298 65
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 201 29
95% 36 206 43
90% 36 206 45
70% 36 206 54
50% 36 206 84
40% 36 207 109
30% 41 287 74
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 120 62
95% 36 200 47
90% 36 204 49
70% 36 204 58
50% 36 204 87
40% 36 204 112
30% 36 204 131
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 131 56
95% 33 180 55
90% 33 180 57
70% 33 180 72
50% 33 180 119
40% 33 180 143
30% 33 180 159
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 209 17
95% 37 209 34
90% 37 209 38
70% 37 209 47
50% 42 287 38
40% 42 287 48
30% 42 287 71
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 206 21
95% 36 207 36
90% 36 207 39
70% 36 207 48
50% 41 283 43
40% 41 284 51
30% 41 284 73
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 156 52
95% 36 205 44
90% 36 205 46
70% 36 205 56
50% 36 205 86
40% 36 205 111
30% 36 205 130
Entity #21: Chains: U - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 196 32
95% 36 196 51
90% 36 196 53
70% 36 196 64
50% 36 196 97
40% 36 196 120
30% 36 196 143
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 179 36
95% 33 179 56
90% 33 179 59
70% 33 179 73
50% 34 220 77
40% 34 220 101
30% 34 220 120
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 199 30
95% 36 207 37
90% 36 207 40
70% 36 207 49
50% 41 284 40
40% 41 285 50
30% 41 285 72
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 206 22
95% 36 206 40
90% 36 206 42
70% 36 206 51
50% 42 288 37
40% 42 288 47
30% 42 290 69
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 211 15
95% 43 217 28
90% 43 217 31
70% 43 217 41
50% 43 217 78
40% 43 217 102
30% 49 256 85
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 210 16
95% 37 211 33
90% 37 211 36
70% 37 211 45
50% 42 254 52
40% 42 255 67
30% 42 255 88
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 206 19
95% 37 206 38
90% 37 210 37
70% 37 210 46
50% 44 290 36
40% 45 292 46
30% 51 347 44
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 116 81
95% 36 206 42
90% 36 206 44
70% 36 206 53
50% 41 284 42
40% 41 284 52
30% 46 338 49
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.