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Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Sequence Clustering and Redundancy Reduction Results
4JI8
Cluster # 112 Members. Sequence cutoff: 40% Cluster size: 199 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4Y4O 47 1p, 2p 30S ribosomal protein S16 300852  
2 4W2F 16 AP, CP 30S Ribosomal Protein S16 300852  
3 4Y4P 47 1p, 2p 30S ribosomal protein S16 300852  
4 4W2G 16 AP, CP 30S Ribosomal Protein S16 300852  
5 4LFB 16 P ribosomal protein S16 300852  
6 1VY4 16 AP, CP 30S ribosomal protein S16 300852  
7 4W2I 16 AP, CP 30S Ribosomal Protein S16 300852  
8 1VY5 16 AP, CP 30S ribosomal protein S16 300852  
9 4WQF 49 BP, DP 30S ribosomal protein S16 300852  
10 4W2H 16 AP, CP 30S Ribosomal Protein S16 300852  
11 4WPO 49 BP, DP 30S ribosomal protein S16 300852  
12 4V8I 16 AP, CP 30S Ribosomal Protein S16 274  
13 4JI1 16 P RIBOSOMAL PROTEIN S16 300852  
14 4DR6 16 P 30S ribosomal protein S16 300852  
15 4LF7 16 P ribosomal protein S16 300852  
16 4LF8 16 P ribosomal protein S16 300852  
17 4WQU 49 BP, DP 30S ribosomal protein S16 300852  
18 2VQE 16 P 30S RIBOSOMAL PROTEIN S16 300852  
19 2UUB 16 P 30S RIBOSOMAL PROTEIN S16 300852  
20 4DV6 16 P ribosomal protein S16 300852  
21 4JYA 16 P 30S ribosomal protein S16 300852  
22 4DR5 16 P 30S ribosomal protein S16 300852  
23 4KHP 16 P 30S Ribosomal protein S16 300852  
24 4DR2 16 P 30S ribosomal protein S16 300852  
25 4LF9 16 P ribosomal protein S16 300852  
26 4WQY 49 BP, DP 30S ribosomal protein S16 300852  
27 4DUY 16 P ribosomal protein S16 300852  
28 4DV7 16 P ribosomal protein S16 300852  
29 4V9H 10 AP 30S ribosomal protein S16 300852  
30 4V8D 16 AS, CS 30S RIBOSOMAL PROTEIN S16 300852  
31 4DR3 16 P 30S ribosomal protein S16 300852  
32 4V90 16 AP 30S RIBOSOMAL PROTEIN S16 300852  
33 4JI3 16 P RIBOSOMAL PROTEIN S16 300852  
34 4JI6 16 P RIBOSOMAL PROTEIN S16 300852  
35 4JI8 16 P RIBOSOMAL PROTEIN S16 300852  
36 2UXC 16 P RIBOSOMAL PROTEIN S16 300852  
37 4V9R 16 AP, CP 30S Ribosomal Protein S16 274  
38 4B3M 16 P 30S RIBOSOMAL PROTEIN S16 300852  
39 4LF4 16 P ribosomal protein S16 300852  
40 4LF6 16 P ribosomal protein S16 300852  
41 4JI7 16 P RIBOSOMAL PROTEIN S16 300852  
42 4B3T 16 P 30S RIBOSOMAL PROTEIN S16 300852  
43 4V8B 16 AS, CS 30S RIBOSOMAL PROTEIN S16 300852  
44 2VQF 16 P 30S RIBOSOMAL PROTEIN S16 300852  
45 2UUA 16 P 30S RIBOSOMAL PROTEIN S16 300852  
46 4V87 46 BS, CS 30S RIBOSOMAL PROTEIN S16 300852  
47 4V95 16 AP, CP 30S Ribosomal Protein S16 274  
48 1VY7 16 AP, CP 30S ribosomal protein S16 300852  
49 4B3R 16 P 30S RIBOSOMAL PROTEIN S16 300852  
50 4LNT 16 QP, XP 30S ribosomal protein S16 300852  
51 4DR1 16 P 30S ribosomal protein S16 300852  
52 4LFA 16 P ribosomal protein S16 300852  
53 4DV4 16 P ribosomal protein S16 300852  
54 4JI0 16 P ribosomal protein S16 300852  
55 4V9S 16 AP, CP 30S Ribosomal Protein S16 274  
56 4JI2 16 P RIBOSOMAL PROTEIN S16 300852  
57 4JV5 16 P 30S ribosomal protein S16 300852  
58 4DR7 16 P 30S ribosomal protein S16 300852  
59 1J5E 16 P 30S RIBOSOMAL PROTEIN S16 274  
60 4GKK 16 P 30S ribosomal protein S16 300852  
61 4DUZ 16 P ribosomal protein S16 300852  
62 4V8G 16 AP, CP 30S Ribosomal Protein S16 300852  
63 4GKJ 16 P 30S ribosomal protein S16 300852  
64 4DV3 16 P ribosomal protein S16 300852  
65 4DV5 16 P ribosomal protein S16 300852  
66 2UUC 16 P 30S RIBOSOMAL PROTEIN S16 300852  
67 4LFC 16 P ribosomal protein S16 300852  
68 1FJG 17 P 30S RIBOSOMAL PROTEIN S16 274  
69 3T1Y 16 P 30S ribosomal protein S16 300852  
70 4JI4 16 P RIBOSOMAL PROTEIN S16 300852  
71 1VY6 16 AP, CP 30S ribosomal protein S16 300852  
72 1XMQ 18 P 30S Ribosomal Protein S16 274  
73 4DV0 16 P ribosomal protein S16 300852  
74 4V9B 16 AS, CS 30S RIBOSOMAL PROTEIN S16 300852  
75 4V6F 46 BS, CS 30S ribosomal protein S16 300852  
76 4V8F 46 BS, CS 30S RIBOSOMAL PROTEIN S16 300852  
77 4B3S 16 P 30S RIBOSOMAL PROTEIN S16 300852  
78 4DV2 16 P ribosomal protein S16 300852  
79 4DV1 16 P ribosomal protein S16 300852  
80 1N32 18 P 30S RIBOSOMAL PROTEIN S16 274  
81 1I94 16 P 30S RIBOSOMAL PROTEIN S16 274  
82 4V8H 16 AP, CP 30S Ribosomal Protein S16 300852  
83 4JI5 16 P RIBOSOMAL PROTEIN S16 300852  
84 4K0K 16 P 30S ribosomal protein S16 300852  
85 4W2E 49 p 30S ribosomal protein S16 300852  
86 4V8C 46 CS, DS 30S RIBOSOMAL PROTEIN S16 300852  
87 4LF5 16 P ribosomal protein S16 300852  
88 4V9A 16 AS, CS 30S RIBOSOMAL PROTEIN S16 300852  
89 4V5J 16 AP, CP 30S RIBOSOMAL PROTEIN S16 300852  
90 4V7Y 16 AP, CP 30S ribosomal protein S16 300852  
91 4V8E 46 BS, DS 30S RIBOSOMAL PROTEIN S16 300852  
92 4DR4 16 P 30S ribosomal protein S16 300852  
93 3OTO 16 P 30S RIBOSOMAL PROTEIN S16 300852  
94 2UU9 16 P 30S RIBOSOMAL PROTEIN S16 300852  
95 4V8Q 50 BP 30S RIBOSOMAL PROTEIN S16 300852  
96 1HR0 17 P 30S RIBOSOMAL PROTEIN S16 274  
97 4AQY 16 P 30S RIBOSOMAL PROTEIN S16 274  
98 4NXM 16 P ribosomal protein S16 300852  
99 4V5L 16 AP 30S RIBOSOMAL PROTEIN S16 RESIDUES 1-17 AND 21-91 300852  
100 4V7X 16 AP, CP 30S ribosomal protein S16 300852  
101 1IBL 19 P 30S RIBOSOMAL PROTEIN S16 274  
102 4V7W 16 AP, CP 30S ribosomal protein S16 300852  
103 4WUS 17 P 30S ribosomal protein S16 300852  
104 4WT8 16 P 30S ribosomal protein S16 300852  
105 4NXN 16 P ribosomal protein S16 300852  
106 1XNR 18 P 16S Ribosomal protein S16 274  
107 4LT8 16 QP, XP 30S ribosomal protein S16 300852  
108 4V51 16 AP, CP 30S RIBOSOMAL PROTEIN S16 300852  
109 4V7L 16 AP, CP 30S ribosomal protein S16 300852  
110 4V5R 16 AP, CP 30S RIBOSOMAL PROTEIN S16 300852  
111 1HNZ 17 P 30S RIBOSOMAL PROTEIN S16 274  
112 1XNQ 18 P Ribosomal protein S16 274  
113 4V8A 46 CP, DP 30S ribosomal protein S16 300852  
114 4V5K 16 AP, CP 30S RIBOSOMAL PROTEIN S16 300852  
115 4V5Q 16 AP, CP 30S RIBOSOMAL PROTEIN S16 300852  
116 4V7J 15 Ap, Bp 30S ribosomal protein S16 300852  
117 4V5C 16 AP, CP 30S RIBOSOMAL PROTEIN S16 300852  
118 4V5E 16 AP, CP 30S RIBOSOMAL PROTEIN S16 300852  
119 4L47 16 QP, XP 30S ribosomal protein S16 300852  
120 4V5P 16 AP, CP 30S RIBOSOMAL PROTEIN S16 300852  
121 4V5D 16 AP, CP 30S RIBOSOMAL PROTEIN S16 300852  
122 4V7Z 16 AP, CP 30S ribosomal protein S16 300852  
123 4V8X 16 AP, CP 30S RIBOSOMAL PROTEIN S16 300852  
124 4V5S 16 AP, CP 30S RIBOSOMAL PROTEIN S16 300852  
125 4V9I 16 AP, CP 30S Ribosomal protein S16 300852  
126 1XMO 18 P 30S ribosomal protein S16 274  
127 3T1H 16 P 30S ribosomal protein S16 300852  
128 2UXD 16 P RIBOSOMAL PROTEIN S16 300852  
129 1N33 18 P 30S RIBOSOMAL PROTEIN S16 274  
130 1IBK 17 P 30S RIBOSOMAL PROTEIN S16 274  
131 4V6G 16 AS, CS 30S RIBOSOMAL PROTEIN S16 300852  
132 4V8N 16 AP, CP 30S RIBOSOMAL PROTEIN S16 300852  
133 4V97 16 AP, CP 30S ribosomal protein S16 300852  
134 1HNW 17 P 30S RIBOSOMAL PROTEIN S16 274  
135 4V7M 16 AP, CP 30S ribosomal protein S16 300852  
136 1IBM 19 P 30S RIBOSOMAL PROTEIN S16 274  
137 4V6A 16 AP, CP 30S ribosomal protein S16 300852  
138 4V84 16 AP, CP 30S ribosomal protein S16 262724  
139 4V7K 15 Ap, Bp 30S ribosomal protein S16 300852  
140 1HNX 17 P 30S RIBOSOMAL PROTEIN S16 274  
141 4V9Q 46 BP, DP 30S ribosomal protein S16 262724  
142 4YHH 16 P 30S ribosomal protein S16 262724  
143 4V9N 19 AP, CP 30S ribosomal protein S16 262724  
144 4P70 16 QP, XP 30S ribosomal protein S16 300852  
145 4V8U 16 AP, CP 30S RIBOSOMAL PROTEIN S16 300852  
146 4LSK 16 QP, XP 30S ribosomal protein S16 300852  
147 4P6F 16 QP, XP 30S ribosomal protein S16 300852  
148 4V67 18 AP, CP 30S ribosomal protein S16 274  
149 4V83 16 AP, CP 30S ribosomal protein S16 262724  
150 4V5F 16 AP, CP 30S RIBOSOMAL PROTEIN S16 300852  
151 1VVJ 16 QP, XP 30S ribosomal protein S16 300852  
152 4LFZ 16 QP, XP 30S ribosomal protein S16 300852  
153 2E5L 17 P 30S ribosomal protein S16 274  
154 2HHH 16 P 30S ribosomal protein S16 300852  
155 4OX9 16 P 30S ribosomal protein S16 300852  
156 2UXB 16 P RIBOSOMAL PROTEIN S16 300852  
157 1I96 16 P 30S RIBOSOMAL PROTEIN S16 274  
158 4V9K 15 AP, CP 30S ribosomal protein S16 262724  
159 1N34 17 P 30S RIBOSOMAL PROTEIN S16 274  
160 4V5A 16 AP, CP 30S RIBOSOMAL PROTEIN S16 300852  
161 4V63 18 AP, CP 30S ribosomal protein S16 262724  
162 4L71 16 QP, XP 30S ribosomal protein S16 300852  
163 4KVB 16 P 30S ribosomal protein S16 262724  
164 4XEJ 43 AS16, BS16 30S ribosomal protein S16 262724  
165 4V7P 16 AP, DP 30S ribosomal protein S16 262724  
166 4V8J 16 AP, CP 30S ribosomal protein S16 300852  
167 1N36 16 P 30S RIBOSOMAL PROTEIN S16 274  
168 2ZM6 16 P 30S ribosomal protein S16 274  
169 4LEL 16 QP, XP 30S ribosomal protein S16 300852  
170 2F4V 17 P 30S ribosomal protein S16 274  
171 4V9L 15 AP, CP 30S ribosomal protein S16 262724  
172 4V5G 16 AP, CP 30S RIBOSOMAL PROTEIN S16 300852  
173 1I97 16 P 30S RIBOSOMAL PROTEIN S16 274  
174 4V9J 15 AP, CP 30S ribosomal protein S16 262724  
175 1I95 16 P 30S RIBOSOMAL PROTEIN S16 274  
176 4V8O 16 AP 30S RIBOSOMAL PROTEIN S16 300852  
177 4V9M 15 AP, CP 30S ribosomal protein S16 262724  
178 4W29 15 AP, CP 30S ribosomal protein S16 262724  
179 4V4Y 18 AS 30S ribosomal protein S16 300852  
180 4V4J 49 q 30S ribosomal protein S16 262724  
181 4V4X 18 AS 30S ribosomal protein S16 300852  
182 4V4Z 19 AS 30S ribosomal protein S16 300852  
183 4V4I 49 q 30S ribosomal protein S16 262724  
184 4V4P 51 BS 30S ribosomal protein S16 300852  
185 4V4R 19 AP 30S ribosomal protein S16 300852  
186 4V4S 19 AP 30S ribosomal protein S16 300852  
187 4V4T 19 AP 30S ribosomal protein S16 300852  
188 4V49 18 AP 30S ribosomal protein S16 562  
189 4V4A 16 AP 30S ribosomal protein S16 562  
190 4V4G 16 AP, CP, EP, GP, IP 30S ribosomal protein S16 562  
191 4V5N 16 AP 30S RIBOSOMAL PROTEIN S16 300852  
192 4V5M 16 AP 30S RIBOSOMAL PROTEIN S16 300852  
193 4V68 10 AP 30S ribosomal protein S16 274  
194 1ML5 21 S 30S RIBOSOMAL PROTEIN S16 562  
195 1JGO 19 S 30S RIBOSOMAL PROTEIN S16 274  
196 1JGP 19 S 30S RIBOSOMAL PROTEIN S16 274  
197 1JGQ 19 S 30S RIBOSOMAL PROTEIN S16 274  
198 4V42 19 AS 30S RIBOSOMAL PROTEIN S16 274  
199 1EMW 1 A S16 RIBOSOMAL PROTEIN 274  
 
Sequence Clusters for the Sequence Entities in PDB 4JI8
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 197 29
95% 35 198 45
90% 35 198 47
70% 35 198 59
50% 46 282 35
40% 46 282 45
30% 51 333 46
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 199 25
95% 35 199 40
90% 35 199 42
70% 35 199 54
50% 40 276 42
40% 47 333 35
30% 47 333 45
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 17980
95% 35 206 31
90% 35 206 33
70% 40 288 24
50% 40 288 34
40% 40 288 44
30% 40 288 69
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 200 22
95% 35 200 38
90% 35 200 40
70% 35 200 51
50% 40 281 39
40% 40 281 50
30% 45 334 49
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 198 26
95% 35 198 46
90% 35 198 48
70% 35 198 60
50% 35 198 92
40% 35 198 114
30% 35 198 138
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 202 20
95% 37 207 30
90% 37 207 32
70% 37 207 43
50% 45 289 33
40% 45 289 43
30% 45 289 67
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 194 30
95% 35 199 42
90% 35 199 44
70% 35 199 56
50% 35 199 89
40% 35 199 112
30% 40 279 76
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 113 66
95% 35 193 50
90% 35 197 49
70% 35 197 61
50% 35 197 93
40% 35 197 116
30% 35 197 139
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 125 59
95% 32 174 71
90% 32 174 75
70% 32 174 89
50% 32 174 130
40% 32 174 148
30% 32 174 164
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 202 19
95% 36 202 33
90% 36 202 36
70% 36 202 47
50% 41 279 38
40% 41 279 49
30% 41 279 73
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 199 23
95% 35 200 35
90% 35 200 38
70% 35 200 48
50% 35 200 88
40% 40 276 53
30% 40 276 75
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 149 54
95% 35 198 44
90% 35 198 46
70% 35 198 58
50% 35 198 91
40% 35 198 113
30% 35 198 137
Entity #21: Chains: U - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 189 32
95% 35 189 52
90% 35 189 55
70% 35 189 67
50% 35 189 112
40% 35 189 135
30% 35 189 153
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 173 48
95% 32 173 72
90% 32 173 76
70% 32 173 91
50% 33 214 76
40% 33 214 102
30% 33 214 122
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 192 31
95% 35 200 36
90% 35 200 39
70% 35 200 49
50% 40 276 40
40% 40 277 51
30% 40 277 74
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 199 24
95% 35 199 39
90% 35 199 41
70% 35 199 52
50% 41 280 37
40% 41 280 48
30% 41 282 72
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 204 17
95% 42 210 29
90% 42 210 31
70% 42 210 42
50% 42 210 82
40% 42 210 107
30% 48 248 87
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 203 18
95% 36 204 32
90% 36 204 34
70% 36 204 44
50% 41 246 54
40% 41 247 71
30% 41 247 94
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 199 21
95% 36 199 37
90% 36 203 35
70% 36 203 45
50% 43 282 36
40% 44 284 46
30% 50 338 44
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 109 86
95% 35 199 41
90% 35 199 43
70% 35 199 55
50% 40 276 41
40% 40 276 54
30% 45 329 50
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.