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Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Sequence Clustering and Redundancy Reduction Results
4JI8
Cluster # 32 Members. Sequence cutoff: 90% Cluster size: 214 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4Y4O 46 1o, 2o 30S ribosomal protein S15 300852  
2 4W2F 15 AO, CO 30S Ribosomal Protein S15 300852  
3 4Y4P 46 1o, 2o 30S ribosomal protein S15 300852  
4 4W2G 15 AO, CO 30S Ribosomal Protein S15 300852  
5 4LFB 15 O ribosomal protein S15 300852  
6 1VY4 15 AO, CO 30S ribosomal protein S15 300852  
7 4W2I 15 AO, CO 30S Ribosomal Protein S15 300852  
8 1VY5 15 AO, CO 30S ribosomal protein S15 300852  
9 4WQF 48 BO, DO 30S ribosomal protein S15 300852  
10 4W2H 15 AO, CO 30S Ribosomal Protein S15 300852  
11 4WPO 48 BO, DO 30S ribosomal protein S15 300852  
12 4V8I 15 AO, CO 30S Ribosomal Protein S15 274  
13 4JI1 15 O RIBOSOMAL PROTEIN S15 300852  
14 4DR6 15 O 30S ribosomal protein S15 300852  
15 4LF7 15 O ribosomal protein S15 300852  
16 4LF8 15 O ribosomal protein S15 300852  
17 4WQU 48 BO, DO 30S ribosomal protein S15 300852  
18 1DK1 2 A 30S RIBOSOMAL PROTEIN S15 RESIDUES 2-87 274  
19 2VQE 15 O 30S RIBOSOMAL PROTEIN S15 300852  
20 4Z8C 46 1o, 2o 30S ribosomal protein S15 300852  
21 2UUB 15 O 30S RIBOSOMAL PROTEIN S15 300852  
22 4DV6 15 O ribosomal protein S15 300852  
23 4JYA 15 O 30S ribosomal protein S15 300852  
24 4DR5 15 O 30S ribosomal protein S15 300852  
25 4KHP 15 O 30S Ribosomal protein S15 300852  
26 1F7Y 2 A 30S RIBOSOMAL PROTEIN S15 274  
27 4DR2 15 O 30S ribosomal protein S15 300852  
28 4LF9 15 O ribosomal protein S15 300852  
29 4WQY 48 BO, DO 30S ribosomal protein S15 300852  
30 4DUY 15 O ribosomal protein S15 300852  
31 4DV7 15 O ribosomal protein S15 300852  
32 4V9H 9 AO 30S ribosomal protein S15 300852  
33 4V8D 15 AR, CR 30S RIBOSOMAL PROTEIN S15 300852  
34 4DR3 15 O 30S ribosomal protein S15 300852  
35 4V90 15 AO 30S RIBOSOMAL PROTEIN S15 300852  
36 4JI3 15 O RIBOSOMAL PROTEIN S15 300852  
37 4JI6 15 O RIBOSOMAL PROTEIN S15 300852  
38 4JI8 15 O RIBOSOMAL PROTEIN S15 300852  
39 2UXC 15 O RIBOSOMAL PROTEIN S15 300852  
40 4V9R 15 AO, CO 30S Ribosomal Protein S15 274  
41 4B3M 15 O 30S RIBOSOMAL PROTEIN S15 300852  
42 4LF4 15 O ribosomal protein S15 300852  
43 4LF6 15 O ribosomal protein S15 300852  
44 4JI7 15 O RIBOSOMAL PROTEIN S15 300852  
45 4B3T 15 O 30S RIBOSOMAL PROTEIN S15 300852  
46 4V8B 15 AR, CR 30S RIBOSOMAL PROTEIN S15 300852  
47 2VQF 15 O 30S RIBOSOMAL PROTEIN S15 300852  
48 2UUA 15 O 30S RIBOSOMAL PROTEIN S15 300852  
49 4V87 45 BR, CR 30S RIBOSOMAL PROTEIN S15 300852  
50 4V95 15 AO, CO 30S Ribosomal Protein S15 274  
51 1VY7 15 AO, CO 30S ribosomal protein S15 300852  
52 1KUQ 2 A 30S RIBOSOMAL PROTEIN S15 274  
53 4B3R 15 O 30S RIBOSOMAL PROTEIN S15 300852  
54 4LNT 15 QO, XO 30S ribosomal protein S15 300852  
55 1G1X 4 B, G 30S RIBOSOMAL PROTEIN S15 274  
56 4DR1 15 O 30S ribosomal protein S15 300852  
57 4LFA 15 O ribosomal protein S15 300852  
58 4DV4 15 O ribosomal protein S15 300852  
59 4JI0 15 O ribosomal protein S15 300852  
60 4V9S 15 AO, CO 30S Ribosomal Protein S15 274  
61 4JI2 15 O RIBOSOMAL PROTEIN S15 300852  
62 4JV5 15 O 30S ribosomal protein S15 300852  
63 4DR7 15 O 30S ribosomal protein S15 300852  
64 1J5E 15 O 30S RIBOSOMAL PROTEIN S15 274  
65 4GKK 15 O 30S ribosomal protein S15 300852  
66 4DUZ 15 O ribosomal protein S15 300852  
67 4V8G 15 AO, CO 30S Ribosomal Protein S15 300852  
68 4GKJ 15 O 30S ribosomal protein S15 300852  
69 4DV3 15 O ribosomal protein S15 300852  
70 4DV5 15 O ribosomal protein S15 300852  
71 2UUC 15 O 30S RIBOSOMAL PROTEIN S15 300852  
72 4LFC 15 O ribosomal protein S15 300852  
73 1FJG 16 O 30S RIBOSOMAL PROTEIN S15 274  
74 3T1Y 15 O 30S ribosomal protein S15 300852  
75 4JI4 15 O RIBOSOMAL PROTEIN S15 300852  
76 1VY6 15 AO, CO 30S ribosomal protein S15 300852  
77 1XMQ 17 O 30S Ribosomal Protein S15 274  
78 4DV0 15 O ribosomal protein S15 300852  
79 4V9B 15 AR, CR 30S RIBOSOMAL PROTEIN S15 300852  
80 4V6F 45 BR, CR 30S ribosomal protein S15 300852  
81 4V8F 45 BR, CR 30S RIBOSOMAL PROTEIN S15 300852  
82 4B3S 15 O 30S RIBOSOMAL PROTEIN S15 300852  
83 4DV2 15 O ribosomal protein S15 300852  
84 4DV1 15 O ribosomal protein S15 300852  
85 1N32 17 O 30S RIBOSOMAL PROTEIN S15 274  
86 1I94 15 O 30S RIBOSOMAL PROTEIN S15 274  
87 4V8H 15 AO, CO 30S Ribosomal Protein S15 300852  
88 4JI5 15 O RIBOSOMAL PROTEIN S15 300852  
89 4K0K 15 O 30S ribosomal protein S15 300852  
90 4W2E 48 o 30S ribosomal protein S15 300852  
91 4V8C 45 CR, DR 30S RIBOSOMAL PROTEIN S15 300852  
92 4LF5 15 O ribosomal protein S15 300852  
93 4V9A 15 AR, CR 30S RIBOSOMAL PROTEIN S15 300852  
94 4V5J 15 AO, CO 30S RIBOSOMAL PROTEIN S15 300852  
95 4V7Y 15 AO, CO 30S ribosomal protein S15 300852  
96 4V8E 45 BR, DR 30S RIBOSOMAL PROTEIN S15 300852  
97 4DR4 15 O 30S ribosomal protein S15 300852  
98 3OTO 15 O 30S RIBOSOMAL PROTEIN S15 300852  
99 2UU9 15 O 30S RIBOSOMAL PROTEIN S15 300852  
100 4V8Q 49 BO 30S RIBOSOMAL PROTEIN S15 300852  
101 1HR0 16 O 30S RIBOSOMAL PROTEIN S15 274  
102 4AQY 15 O 30S RIBOSOMAL PROTEIN S15 274  
103 4NXM 15 O ribosomal protein S15 300852  
104 4V5L 15 AO 30S RIBOSOMAL PROTEIN S15 300852  
105 4V7X 15 AO, CO 30S ribosomal protein S15 300852  
106 4ZER 46 1o, 2o 30S ribosomal protein S15 300852  
107 1IBL 18 O 30S RIBOSOMAL PROTEIN S15 274  
108 4V7W 15 AO, CO 30S ribosomal protein S15 300852  
109 4WUS 16 O 30S ribosomal protein S15 300852  
110 4WT8 15 O 30S ribosomal protein S15 300852  
111 4NXN 15 O ribosomal protein S15 300852  
112 1XNR 17 O 16S Ribosomal protein S15 274  
113 4LT8 15 QO, XO 30S ribosomal protein S15 300852  
114 4V51 15 AO, CO 30S RIBOSOMAL PROTEIN S15 300852  
115 4V7L 15 AO, CO 30S ribosomal protein S15 300852  
116 4V5R 15 AO, CO 30S RIBOSOMAL PROTEIN S15 300852  
117 1HNZ 16 O 30S RIBOSOMAL PROTEIN S15 274  
118 1XNQ 17 O Ribosomal protein S15 274  
119 4V8A 45 CO, DO 30S ribosomal protein S15 300852  
120 4V5K 15 AO, CO 30S RIBOSOMAL PROTEIN S15 300852  
121 4V5Q 15 AO, CO 30S RIBOSOMAL PROTEIN S15 300852  
122 4V7J 14 Ao, Bo 30S ribosomal protein S15 300852  
123 4V5C 15 AO, CO 30S RIBOSOMAL PROTEIN S15 300852  
124 4V5E 15 AO, CO 30S RIBOSOMAL PROTEIN S15 300852  
125 4L47 15 QO, XO 30S ribosomal protein S15 300852  
126 4V5P 15 AO, CO 30S RIBOSOMAL PROTEIN S15 300852  
127 4V5D 15 AO, CO 30S RIBOSOMAL PROTEIN S15 300852  
128 4V7Z 15 AO, CO 30S ribosomal protein S15 300852  
129 4V8X 15 AO, CO 30S RIBOSOMAL PROTEIN S15 300852  
130 4V5S 15 AO, CO 30S RIBOSOMAL PROTEIN S15 300852  
131 4V9I 15 AO, CO 30S Ribosomal protein S15 300852  
132 1XMO 17 O 30S ribosomal protein S15 274  
133 3T1H 15 O 30S ribosomal protein S15 300852  
134 2UXD 15 O RIBOSOMAL PROTEIN S15 300852  
135 1N33 17 O 30S RIBOSOMAL PROTEIN S15 274  
136 1IBK 16 O 30S RIBOSOMAL PROTEIN S15 274  
137 4V6G 15 AR, CR 30S RIBOSOMAL PROTEIN S15 300852  
138 4V8N 15 AO, CO 30S RIBOSOMAL PROTEIN S15 300852  
139 4V97 15 AO, CO 30S ribosomal protein S15 300852  
140 1HNW 16 O 30S RIBOSOMAL PROTEIN S15 274  
141 4V7M 15 AO, CO 30S ribosomal protein S15 300852  
142 4TUD 15 QO, XO 30S ribosomal protein S15 300852  
143 1IBM 18 O 30S RIBOSOMAL PROTEIN S15 274  
144 4V6A 15 AO, CO 30S ribosomal protein S15 300852  
145 4TUE 15 QO, XO 30S ribosomal protein S15 300852  
146 4TUA 15 QO, XO 30S ribosomal protein S15 300852  
147 4V84 15 AO, CO 30S ribosomal protein S15 262724  
148 4V7K 14 Ao, Bo 30S ribosomal protein S15 300852  
149 1HNX 16 O 30S RIBOSOMAL PROTEIN S15 274  
150 4V9Q 45 BO, DO 30S ribosomal protein S15 262724  
151 4TUC 15 QO, XO 30S ribosomal protein S15 300852  
152 4YHH 15 O 30S ribosomal protein S15 262724  
153 4TUB 15 QO, XO 30S ribosomal protein S15 300852  
154 4V9N 18 AO, CO 30S ribosomal protein S15 262724  
155 4P70 15 QO, XO 30S ribosomal protein S15 300852  
156 4V8U 15 AO, CO 30S RIBOSOMAL PROTEIN S15 300852  
157 4LSK 15 QO, XO 30S ribosomal protein S15 300852  
158 4P6F 15 QO, XO 30S ribosomal protein S15 300852  
159 4V67 17 AO, CO 30S ribosomal protein S15 274  
160 4V83 15 AO, CO 30S ribosomal protein S15 262724  
161 4V5F 15 AO, CO 30S RIBOSOMAL PROTEIN S15 300852  
162 1VVJ 15 QO, XO 30S ribosomal protein S15 300852  
163 4LFZ 15 QO, XO 30S ribosomal protein S15 300852  
164 2E5L 16 O 30S ribosomal protein S15 274  
165 2HHH 15 O 30S ribosomal protein S15 300852  
166 4OX9 15 O 30S ribosomal protein S15 300852  
167 2UXB 15 O RIBOSOMAL PROTEIN S15 300852  
168 1I96 15 O 30S RIBOSOMAL PROTEIN S15 274  
169 4V9K 14 AO, CO 30S ribosomal protein S15 262724  
170 1N34 16 O 30S RIBOSOMAL PROTEIN S15 274  
171 4V5A 15 AO, CO 30S RIBOSOMAL PROTEIN S15 300852  
172 4V63 17 AO, CO 30S ribosomal protein S15 262724  
173 4L71 15 QO, XO 30S ribosomal protein S15 300852  
174 4KVB 15 O 30S ribosomal protein S15 262724  
175 4XEJ 42 AS15, BS15 30S ribosomal protein S15 262724  
176 4V7P 15 AO, DO 30S ribosomal protein S15 262724  
177 4V8J 15 AO, CO 30S ribosomal protein S15 300852  
178 1N36 15 O 30S RIBOSOMAL PROTEIN S15 274  
179 2ZM6 15 O 30S ribosomal protein S15 274  
180 4LEL 15 QO, XO 30S ribosomal protein S15 300852  
181 2F4V 16 O 30S ribosomal protein S15 274  
182 4V9L 14 AO, CO 30S ribosomal protein S15 262724  
183 1FKA 15 O 30S RIBOSOMAL PROTEIN S15 274  
184 4V5G 15 AO, CO 30S RIBOSOMAL PROTEIN S15 300852  
185 1I97 15 O 30S RIBOSOMAL PROTEIN S15 274  
186 4V9J 14 AO, CO 30S ribosomal protein S15 262724  
187 1I95 15 O 30S RIBOSOMAL PROTEIN S15 274  
188 4V8O 15 AO 30S RIBOSOMAL PROTEIN S15 300852  
189 4V9M 14 AO, CO 30S ribosomal protein S15 262724  
190 4W29 14 AO, CO 30S ribosomal protein S15 262724  
191 4V4Y 17 AR 30S ribosomal protein S15 300852  
192 4V4J 48 p 30S ribosomal protein S15 262724  
193 4V4X 17 AR 30S ribosomal protein S15 300852  
194 4V4Z 18 AR 30S ribosomal protein S15 300852  
195 4V4I 48 p 30S ribosomal protein S15 262724  
196 4V4P 50 BR 30S ribosomal protein S15 300852  
197 4V4R 18 AO 30S ribosomal protein S15 300852  
198 4V4S 18 AO 30S ribosomal protein S15 300852  
199 4V4T 18 AO 30S ribosomal protein S15 300852  
200 4V49 17 AO 30S ribosomal protein S15 562  
201 4V4A 15 AO 30S ribosomal protein S15 562  
202 4V4G 15 AO, CO, EO, GO, IO 30S ribosomal protein S15 562  
203 4V5N 15 AO 30S RIBOSOMAL PROTEIN S15 300852  
204 4V5M 15 AO 30S RIBOSOMAL PROTEIN S15 300852  
205 4V68 9 AO 30S ribosomal protein S15 274  
206 4V5Z 22 Ao 40S Ribosomal protein S13e 9615  
207 2FKX 1 A 30S ribosomal protein S15 274  
208 1ML5 20 R 30S RIBOSOMAL PROTEIN S15 562  
209 1JGO 18 R 30S RIBOSOMAL PROTEIN S15 274  
210 1JGP 18 R 30S RIBOSOMAL PROTEIN S15 274  
211 1JGQ 18 R 30S RIBOSOMAL PROTEIN S15 274  
212 4V42 18 AR 30S RIBOSOMAL PROTEIN S15 274  
213 1EG0 10 F PROTEIN (S15 RIBOSOMAL PROTEIN) MODELED BY ANALOGOUS PROTEIN OF B. STEAROTHERMOPHILUS TAKEN FROM PDB ENTRY 1A32 562  
214 1AB3 1 A RIBOSOMAL RNA BINDING PROTEIN S15 274  
 
Sequence Clusters for the Sequence Entities in PDB 4JI8
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 204 25
95% 36 205 45
90% 36 205 47
70% 36 205 57
50% 47 290 35
40% 47 290 45
30% 52 342 46
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 206 23
95% 36 206 41
90% 36 206 43
70% 36 206 52
50% 41 284 41
40% 48 343 34
30% 48 344 45
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 18091
95% 36 213 31
90% 36 213 34
70% 41 295 24
50% 41 296 34
40% 41 296 44
30% 41 296 67
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 207 20
95% 36 207 39
90% 36 207 41
70% 36 207 50
50% 41 289 39
40% 41 289 49
30% 46 343 48
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 205 24
95% 36 205 46
90% 36 205 48
70% 36 206 55
50% 36 206 85
40% 36 206 110
30% 36 206 129
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 209 18
95% 38 214 29
90% 38 214 32
70% 38 214 42
50% 46 297 33
40% 46 298 43
30% 46 298 65
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 201 29
95% 36 206 43
90% 36 206 45
70% 36 206 54
50% 36 206 84
40% 36 207 109
30% 41 287 74
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 120 62
95% 36 200 47
90% 36 204 49
70% 36 204 58
50% 36 204 87
40% 36 204 112
30% 36 204 131
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 131 56
95% 33 180 55
90% 33 180 57
70% 33 180 72
50% 33 180 119
40% 33 180 143
30% 33 180 159
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 209 17
95% 37 209 33
90% 37 209 37
70% 37 209 46
50% 42 287 38
40% 42 287 48
30% 42 287 71
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 206 21
95% 36 207 35
90% 36 207 38
70% 36 207 47
50% 41 283 43
40% 41 284 51
30% 41 284 73
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 156 52
95% 36 205 44
90% 36 205 46
70% 36 205 56
50% 36 205 86
40% 36 205 111
30% 36 205 130
Entity #21: Chains: U - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 196 32
95% 36 196 51
90% 36 196 53
70% 36 196 64
50% 36 196 97
40% 36 196 120
30% 36 196 143
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 179 36
95% 33 179 56
90% 33 179 59
70% 33 179 73
50% 34 220 77
40% 34 220 100
30% 34 220 120
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 199 30
95% 36 207 37
90% 36 207 40
70% 36 207 49
50% 41 284 40
40% 41 285 50
30% 41 285 72
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 206 22
95% 36 206 40
90% 36 206 42
70% 36 206 51
50% 42 288 37
40% 42 288 47
30% 42 290 69
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 211 15
95% 43 217 28
90% 43 217 31
70% 43 217 41
50% 43 217 78
40% 43 217 102
30% 49 256 85
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 210 16
95% 37 211 32
90% 37 211 35
70% 37 211 44
50% 42 254 51
40% 42 255 67
30% 42 255 88
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 206 19
95% 37 206 38
90% 37 210 36
70% 37 210 45
50% 44 290 36
40% 45 292 46
30% 51 347 44
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 116 81
95% 36 206 42
90% 36 206 44
70% 36 206 53
50% 41 284 42
40% 41 284 52
30% 46 338 49
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.