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Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Sequence Clustering and Redundancy Reduction Results
4JI8
Cluster # 43 Members. Sequence cutoff: 70% Cluster size: 207 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4Y4O 46 1o, 2o 30S ribosomal protein S15 300852  
2 4W2F 15 AO, CO 30S Ribosomal Protein S15 300852  
3 4Y4P 46 1o, 2o 30S ribosomal protein S15 300852  
4 4W2G 15 AO, CO 30S Ribosomal Protein S15 300852  
5 4LFB 15 O ribosomal protein S15 300852  
6 1VY4 15 AO, CO 30S ribosomal protein S15 300852  
7 4W2I 15 AO, CO 30S Ribosomal Protein S15 300852  
8 1VY5 15 AO, CO 30S ribosomal protein S15 300852  
9 4WQF 48 BO, DO 30S ribosomal protein S15 300852  
10 4W2H 15 AO, CO 30S Ribosomal Protein S15 300852  
11 4WPO 48 BO, DO 30S ribosomal protein S15 300852  
12 4V8I 15 AO, CO 30S Ribosomal Protein S15 274  
13 4JI1 15 O RIBOSOMAL PROTEIN S15 300852  
14 4DR6 15 O 30S ribosomal protein S15 300852  
15 4LF7 15 O ribosomal protein S15 300852  
16 4LF8 15 O ribosomal protein S15 300852  
17 4WQU 48 BO, DO 30S ribosomal protein S15 300852  
18 1DK1 2 A 30S RIBOSOMAL PROTEIN S15 RESIDUES 2-87 274  
19 2VQE 15 O 30S RIBOSOMAL PROTEIN S15 300852  
20 2UUB 15 O 30S RIBOSOMAL PROTEIN S15 300852  
21 4DV6 15 O ribosomal protein S15 300852  
22 4JYA 15 O 30S ribosomal protein S15 300852  
23 4DR5 15 O 30S ribosomal protein S15 300852  
24 4KHP 15 O 30S Ribosomal protein S15 300852  
25 1F7Y 2 A 30S RIBOSOMAL PROTEIN S15 274  
26 4DR2 15 O 30S ribosomal protein S15 300852  
27 4LF9 15 O ribosomal protein S15 300852  
28 4WQY 48 BO, DO 30S ribosomal protein S15 300852  
29 4DUY 15 O ribosomal protein S15 300852  
30 4DV7 15 O ribosomal protein S15 300852  
31 4V9H 9 AO 30S ribosomal protein S15 300852  
32 4V8D 15 AR, CR 30S RIBOSOMAL PROTEIN S15 300852  
33 4DR3 15 O 30S ribosomal protein S15 300852  
34 4V90 15 AO 30S RIBOSOMAL PROTEIN S15 300852  
35 4JI3 15 O RIBOSOMAL PROTEIN S15 300852  
36 4JI6 15 O RIBOSOMAL PROTEIN S15 300852  
37 4JI8 15 O RIBOSOMAL PROTEIN S15 300852  
38 2UXC 15 O RIBOSOMAL PROTEIN S15 300852  
39 4V9R 15 AO, CO 30S Ribosomal Protein S15 274  
40 4B3M 15 O 30S RIBOSOMAL PROTEIN S15 300852  
41 4LF4 15 O ribosomal protein S15 300852  
42 4LF6 15 O ribosomal protein S15 300852  
43 4JI7 15 O RIBOSOMAL PROTEIN S15 300852  
44 4B3T 15 O 30S RIBOSOMAL PROTEIN S15 300852  
45 4V8B 15 AR, CR 30S RIBOSOMAL PROTEIN S15 300852  
46 2VQF 15 O 30S RIBOSOMAL PROTEIN S15 300852  
47 2UUA 15 O 30S RIBOSOMAL PROTEIN S15 300852  
48 4V87 45 BR, CR 30S RIBOSOMAL PROTEIN S15 300852  
49 4V95 15 AO, CO 30S Ribosomal Protein S15 274  
50 1VY7 15 AO, CO 30S ribosomal protein S15 300852  
51 1KUQ 2 A 30S RIBOSOMAL PROTEIN S15 274  
52 4B3R 15 O 30S RIBOSOMAL PROTEIN S15 300852  
53 4LNT 15 QO, XO 30S ribosomal protein S15 300852  
54 1G1X 4 B, G 30S RIBOSOMAL PROTEIN S15 274  
55 4DR1 15 O 30S ribosomal protein S15 300852  
56 4LFA 15 O ribosomal protein S15 300852  
57 4DV4 15 O ribosomal protein S15 300852  
58 4JI0 15 O ribosomal protein S15 300852  
59 4V9S 15 AO, CO 30S Ribosomal Protein S15 274  
60 4JI2 15 O RIBOSOMAL PROTEIN S15 300852  
61 4JV5 15 O 30S ribosomal protein S15 300852  
62 4DR7 15 O 30S ribosomal protein S15 300852  
63 1J5E 15 O 30S RIBOSOMAL PROTEIN S15 274  
64 4GKK 15 O 30S ribosomal protein S15 300852  
65 4DUZ 15 O ribosomal protein S15 300852  
66 4V8G 15 AO, CO 30S Ribosomal Protein S15 300852  
67 4GKJ 15 O 30S ribosomal protein S15 300852  
68 4DV3 15 O ribosomal protein S15 300852  
69 4DV5 15 O ribosomal protein S15 300852  
70 2UUC 15 O 30S RIBOSOMAL PROTEIN S15 300852  
71 4LFC 15 O ribosomal protein S15 300852  
72 1FJG 16 O 30S RIBOSOMAL PROTEIN S15 274  
73 3T1Y 15 O 30S ribosomal protein S15 300852  
74 4JI4 15 O RIBOSOMAL PROTEIN S15 300852  
75 1VY6 15 AO, CO 30S ribosomal protein S15 300852  
76 1XMQ 17 O 30S Ribosomal Protein S15 274  
77 4DV0 15 O ribosomal protein S15 300852  
78 4V9B 15 AR, CR 30S RIBOSOMAL PROTEIN S15 300852  
79 4V6F 45 BR, CR 30S ribosomal protein S15 300852  
80 4V8F 45 BR, CR 30S RIBOSOMAL PROTEIN S15 300852  
81 4B3S 15 O 30S RIBOSOMAL PROTEIN S15 300852  
82 4DV2 15 O ribosomal protein S15 300852  
83 4DV1 15 O ribosomal protein S15 300852  
84 1N32 17 O 30S RIBOSOMAL PROTEIN S15 274  
85 1I94 15 O 30S RIBOSOMAL PROTEIN S15 274  
86 4V8H 15 AO, CO 30S Ribosomal Protein S15 300852  
87 4JI5 15 O RIBOSOMAL PROTEIN S15 300852  
88 4K0K 15 O 30S ribosomal protein S15 300852  
89 4W2E 48 o 30S ribosomal protein S15 300852  
90 4V8C 45 CR, DR 30S RIBOSOMAL PROTEIN S15 300852  
91 4LF5 15 O ribosomal protein S15 300852  
92 4V9A 15 AR, CR 30S RIBOSOMAL PROTEIN S15 300852  
93 4V5J 15 AO, CO 30S RIBOSOMAL PROTEIN S15 300852  
94 4V7Y 15 AO, CO 30S ribosomal protein S15 300852  
95 4V8E 45 BR, DR 30S RIBOSOMAL PROTEIN S15 300852  
96 4DR4 15 O 30S ribosomal protein S15 300852  
97 3OTO 15 O 30S RIBOSOMAL PROTEIN S15 300852  
98 2UU9 15 O 30S RIBOSOMAL PROTEIN S15 300852  
99 4V8Q 49 BO 30S RIBOSOMAL PROTEIN S15 300852  
100 1HR0 16 O 30S RIBOSOMAL PROTEIN S15 274  
101 4AQY 15 O 30S RIBOSOMAL PROTEIN S15 274  
102 4NXM 15 O ribosomal protein S15 300852  
103 4V5L 15 AO 30S RIBOSOMAL PROTEIN S15 300852  
104 4V7X 15 AO, CO 30S ribosomal protein S15 300852  
105 1IBL 18 O 30S RIBOSOMAL PROTEIN S15 274  
106 4V7W 15 AO, CO 30S ribosomal protein S15 300852  
107 4WUS 16 O 30S ribosomal protein S15 300852  
108 4WT8 15 O 30S ribosomal protein S15 300852  
109 4NXN 15 O ribosomal protein S15 300852  
110 1XNR 17 O 16S Ribosomal protein S15 274  
111 4LT8 15 QO, XO 30S ribosomal protein S15 300852  
112 4V51 15 AO, CO 30S RIBOSOMAL PROTEIN S15 300852  
113 4V7L 15 AO, CO 30S ribosomal protein S15 300852  
114 4V5R 15 AO, CO 30S RIBOSOMAL PROTEIN S15 300852  
115 1HNZ 16 O 30S RIBOSOMAL PROTEIN S15 274  
116 1XNQ 17 O Ribosomal protein S15 274  
117 4V8A 45 CO, DO 30S ribosomal protein S15 300852  
118 4V5K 15 AO, CO 30S RIBOSOMAL PROTEIN S15 300852  
119 4V5Q 15 AO, CO 30S RIBOSOMAL PROTEIN S15 300852  
120 4V7J 14 Ao, Bo 30S ribosomal protein S15 300852  
121 4V5C 15 AO, CO 30S RIBOSOMAL PROTEIN S15 300852  
122 4V5E 15 AO, CO 30S RIBOSOMAL PROTEIN S15 300852  
123 4L47 15 QO, XO 30S ribosomal protein S15 300852  
124 4V5P 15 AO, CO 30S RIBOSOMAL PROTEIN S15 300852  
125 4V5D 15 AO, CO 30S RIBOSOMAL PROTEIN S15 300852  
126 4V7Z 15 AO, CO 30S ribosomal protein S15 300852  
127 4V8X 15 AO, CO 30S RIBOSOMAL PROTEIN S15 300852  
128 4V5S 15 AO, CO 30S RIBOSOMAL PROTEIN S15 300852  
129 4V9I 15 AO, CO 30S Ribosomal protein S15 300852  
130 1XMO 17 O 30S ribosomal protein S15 274  
131 3T1H 15 O 30S ribosomal protein S15 300852  
132 2UXD 15 O RIBOSOMAL PROTEIN S15 300852  
133 1N33 17 O 30S RIBOSOMAL PROTEIN S15 274  
134 1IBK 16 O 30S RIBOSOMAL PROTEIN S15 274  
135 4V6G 15 AR, CR 30S RIBOSOMAL PROTEIN S15 300852  
136 4V8N 15 AO, CO 30S RIBOSOMAL PROTEIN S15 300852  
137 4V97 15 AO, CO 30S ribosomal protein S15 300852  
138 1HNW 16 O 30S RIBOSOMAL PROTEIN S15 274  
139 4V7M 15 AO, CO 30S ribosomal protein S15 300852  
140 1IBM 18 O 30S RIBOSOMAL PROTEIN S15 274  
141 4V6A 15 AO, CO 30S ribosomal protein S15 300852  
142 4V84 15 AO, CO 30S ribosomal protein S15 262724  
143 4V7K 14 Ao, Bo 30S ribosomal protein S15 300852  
144 1HNX 16 O 30S RIBOSOMAL PROTEIN S15 274  
145 4V9Q 45 BO, DO 30S ribosomal protein S15 262724  
146 4YHH 15 O 30S ribosomal protein S15 262724  
147 4V9N 18 AO, CO 30S ribosomal protein S15 262724  
148 4P70 15 QO, XO 30S ribosomal protein S15 300852  
149 4V8U 15 AO, CO 30S RIBOSOMAL PROTEIN S15 300852  
150 4LSK 15 QO, XO 30S ribosomal protein S15 300852  
151 4P6F 15 QO, XO 30S ribosomal protein S15 300852  
152 4V67 17 AO, CO 30S ribosomal protein S15 274  
153 4V83 15 AO, CO 30S ribosomal protein S15 262724  
154 4V5F 15 AO, CO 30S RIBOSOMAL PROTEIN S15 300852  
155 1VVJ 15 QO, XO 30S ribosomal protein S15 300852  
156 4LFZ 15 QO, XO 30S ribosomal protein S15 300852  
157 2E5L 16 O 30S ribosomal protein S15 274  
158 2HHH 15 O 30S ribosomal protein S15 300852  
159 4OX9 15 O 30S ribosomal protein S15 300852  
160 2UXB 15 O RIBOSOMAL PROTEIN S15 300852  
161 1I96 15 O 30S RIBOSOMAL PROTEIN S15 274  
162 4V9K 14 AO, CO 30S ribosomal protein S15 262724  
163 1N34 16 O 30S RIBOSOMAL PROTEIN S15 274  
164 4V5A 15 AO, CO 30S RIBOSOMAL PROTEIN S15 300852  
165 4V63 17 AO, CO 30S ribosomal protein S15 262724  
166 4L71 15 QO, XO 30S ribosomal protein S15 300852  
167 4KVB 15 O 30S ribosomal protein S15 262724  
168 4XEJ 42 AS15, BS15 30S ribosomal protein S15 262724  
169 4V7P 15 AO, DO 30S ribosomal protein S15 262724  
170 4V8J 15 AO, CO 30S ribosomal protein S15 300852  
171 1N36 15 O 30S RIBOSOMAL PROTEIN S15 274  
172 2ZM6 15 O 30S ribosomal protein S15 274  
173 4LEL 15 QO, XO 30S ribosomal protein S15 300852  
174 2F4V 16 O 30S ribosomal protein S15 274  
175 4V9L 14 AO, CO 30S ribosomal protein S15 262724  
176 1FKA 15 O 30S RIBOSOMAL PROTEIN S15 274  
177 4V5G 15 AO, CO 30S RIBOSOMAL PROTEIN S15 300852  
178 1I97 15 O 30S RIBOSOMAL PROTEIN S15 274  
179 4V9J 14 AO, CO 30S ribosomal protein S15 262724  
180 1I95 15 O 30S RIBOSOMAL PROTEIN S15 274  
181 4V8O 15 AO 30S RIBOSOMAL PROTEIN S15 300852  
182 4V9M 14 AO, CO 30S ribosomal protein S15 262724  
183 4W29 14 AO, CO 30S ribosomal protein S15 262724  
184 4V4Y 17 AR 30S ribosomal protein S15 300852  
185 4V4J 48 p 30S ribosomal protein S15 262724  
186 4V4X 17 AR 30S ribosomal protein S15 300852  
187 4V4Z 18 AR 30S ribosomal protein S15 300852  
188 4V4I 48 p 30S ribosomal protein S15 262724  
189 4V4P 50 BR 30S ribosomal protein S15 300852  
190 4V4R 18 AO 30S ribosomal protein S15 300852  
191 4V4S 18 AO 30S ribosomal protein S15 300852  
192 4V4T 18 AO 30S ribosomal protein S15 300852  
193 4V49 17 AO 30S ribosomal protein S15 562  
194 4V4A 15 AO 30S ribosomal protein S15 562  
195 4V4G 15 AO, CO, EO, GO, IO 30S ribosomal protein S15 562  
196 4V5N 15 AO 30S RIBOSOMAL PROTEIN S15 300852  
197 4V5M 15 AO 30S RIBOSOMAL PROTEIN S15 300852  
198 4V68 9 AO 30S ribosomal protein S15 274  
199 4V5Z 22 Ao 40S Ribosomal protein S13e 9615  
200 2FKX 1 A 30S ribosomal protein S15 274  
201 1ML5 20 R 30S RIBOSOMAL PROTEIN S15 562  
202 1JGO 18 R 30S RIBOSOMAL PROTEIN S15 274  
203 1JGP 18 R 30S RIBOSOMAL PROTEIN S15 274  
204 1JGQ 18 R 30S RIBOSOMAL PROTEIN S15 274  
205 4V42 18 AR 30S RIBOSOMAL PROTEIN S15 274  
206 1EG0 10 F PROTEIN (S15 RIBOSOMAL PROTEIN) MODELED BY ANALOGOUS PROTEIN OF B. STEAROTHERMOPHILUS TAKEN FROM PDB ENTRY 1A32 562  
207 1AB3 1 A RIBOSOMAL RNA BINDING PROTEIN S15 274  
 
Sequence Clusters for the Sequence Entities in PDB 4JI8
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 197 29
95% 35 198 45
90% 35 198 47
70% 35 198 59
50% 46 282 35
40% 46 282 45
30% 51 333 45
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 199 25
95% 35 199 40
90% 35 199 42
70% 35 199 54
50% 40 276 42
40% 47 332 35
30% 47 332 46
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 17961
95% 35 206 31
90% 35 206 33
70% 40 288 24
50% 40 288 34
40% 40 288 44
30% 40 288 69
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 200 22
95% 35 200 38
90% 35 200 40
70% 35 200 51
50% 40 281 39
40% 40 281 50
30% 45 333 49
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 198 26
95% 35 198 46
90% 35 198 48
70% 35 198 60
50% 35 198 92
40% 35 198 114
30% 35 198 137
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 202 20
95% 37 207 30
90% 37 207 32
70% 37 207 43
50% 45 289 33
40% 45 289 43
30% 45 289 67
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 194 30
95% 35 199 42
90% 35 199 44
70% 35 199 56
50% 35 199 89
40% 35 199 112
30% 40 279 76
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 113 66
95% 35 193 50
90% 35 197 49
70% 35 197 61
50% 35 197 93
40% 35 197 116
30% 35 197 138
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 125 59
95% 32 174 71
90% 32 174 75
70% 32 174 88
50% 32 174 128
40% 32 174 146
30% 32 174 164
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 202 19
95% 36 202 33
90% 36 202 36
70% 36 202 47
50% 41 279 38
40% 41 279 49
30% 41 279 73
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 199 23
95% 35 200 35
90% 35 200 38
70% 35 200 48
50% 35 200 88
40% 40 276 53
30% 40 276 75
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 149 54
95% 35 198 44
90% 35 198 46
70% 35 198 58
50% 35 198 91
40% 35 198 113
30% 35 198 136
Entity #21: Chains: U - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 189 32
95% 35 189 52
90% 35 189 55
70% 35 189 67
50% 35 189 111
40% 35 189 134
30% 35 189 153
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 173 48
95% 32 173 72
90% 32 173 76
70% 32 173 90
50% 33 214 76
40% 33 214 102
30% 33 214 122
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 192 31
95% 35 200 36
90% 35 200 39
70% 35 200 49
50% 40 276 40
40% 40 277 51
30% 40 277 74
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 199 24
95% 35 199 39
90% 35 199 41
70% 35 199 52
50% 41 280 37
40% 41 280 48
30% 41 282 72
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 204 17
95% 42 210 29
90% 42 210 31
70% 42 210 42
50% 42 210 82
40% 42 210 107
30% 48 248 87
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 203 18
95% 36 204 32
90% 36 204 34
70% 36 204 44
50% 41 246 53
40% 41 247 70
30% 41 247 94
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 199 21
95% 36 199 37
90% 36 203 35
70% 36 203 45
50% 43 282 36
40% 44 284 46
30% 50 337 44
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 109 86
95% 35 199 41
90% 35 199 43
70% 35 199 55
50% 40 276 41
40% 40 276 54
30% 45 328 50
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.