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Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Sequence Clustering and Redundancy Reduction Results
4JI8
Cluster # 44 Members. Sequence cutoff: 70% Cluster size: 204 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4W2F 15 AO, CO 30S Ribosomal Protein S15 300852  
2 4W2G 15 AO, CO 30S Ribosomal Protein S15 300852  
3 4LFB 15 O ribosomal protein S15 300852  
4 1VY4 15 AO, CO 30S ribosomal protein S15 300852  
5 4W2I 15 AO, CO 30S Ribosomal Protein S15 300852  
6 1VY5 15 AO, CO 30S ribosomal protein S15 300852  
7 4WQF 48 BO, DO 30S ribosomal protein S15 300852  
8 4W2H 15 AO, CO 30S Ribosomal Protein S15 300852  
9 4WPO 48 BO, DO 30S ribosomal protein S15 300852  
10 4V8I 15 AO, CO 30S Ribosomal Protein S15 274  
11 4JI1 15 O RIBOSOMAL PROTEIN S15 300852  
12 4DR6 15 O 30S ribosomal protein S15 300852  
13 4LF7 15 O ribosomal protein S15 300852  
14 4LF8 15 O ribosomal protein S15 300852  
15 4WQU 48 BO, DO 30S ribosomal protein S15 300852  
16 1DK1 2 A 30S RIBOSOMAL PROTEIN S15 RESIDUES 2-87 274  
17 2VQE 15 O 30S RIBOSOMAL PROTEIN S15 300852  
18 2UUB 15 O 30S RIBOSOMAL PROTEIN S15 300852  
19 4DV6 15 O ribosomal protein S15 300852  
20 4JYA 15 O 30S ribosomal protein S15 300852  
21 4DR5 15 O 30S ribosomal protein S15 300852  
22 4KHP 15 O 30S Ribosomal protein S15 300852  
23 1F7Y 2 A 30S RIBOSOMAL PROTEIN S15 274  
24 4DR2 15 O 30S ribosomal protein S15 300852  
25 4LF9 15 O ribosomal protein S15 300852  
26 4WQY 48 BO, DO 30S ribosomal protein S15 300852  
27 4DUY 15 O ribosomal protein S15 300852  
28 4DV7 15 O ribosomal protein S15 300852  
29 4V9H 9 AO 30S ribosomal protein S15 300852  
30 4V8D 15 AR, CR 30S RIBOSOMAL PROTEIN S15 300852  
31 4DR3 15 O 30S ribosomal protein S15 300852  
32 4V90 15 AO 30S RIBOSOMAL PROTEIN S15 300852  
33 4JI3 15 O RIBOSOMAL PROTEIN S15 300852  
34 4JI6 15 O RIBOSOMAL PROTEIN S15 300852  
35 4JI8 15 O RIBOSOMAL PROTEIN S15 300852  
36 2UXC 15 O RIBOSOMAL PROTEIN S15 300852  
37 4V9R 15 AO, CO 30S Ribosomal Protein S15 274  
38 4B3M 15 O 30S RIBOSOMAL PROTEIN S15 300852  
39 4LF4 15 O ribosomal protein S15 300852  
40 4LF6 15 O ribosomal protein S15 300852  
41 4JI7 15 O RIBOSOMAL PROTEIN S15 300852  
42 4B3T 15 O 30S RIBOSOMAL PROTEIN S15 300852  
43 4V8B 15 AR, CR 30S RIBOSOMAL PROTEIN S15 300852  
44 2VQF 15 O 30S RIBOSOMAL PROTEIN S15 300852  
45 2UUA 15 O 30S RIBOSOMAL PROTEIN S15 300852  
46 4V87 45 BR, CR 30S RIBOSOMAL PROTEIN S15 300852  
47 4V95 15 AO, CO 30S Ribosomal Protein S15 274  
48 1VY7 15 AO, CO 30S ribosomal protein S15 300852  
49 1KUQ 2 A 30S RIBOSOMAL PROTEIN S15 274  
50 4B3R 15 O 30S RIBOSOMAL PROTEIN S15 300852  
51 4LNT 15 QO, XO 30S ribosomal protein S15 300852  
52 1G1X 4 B, G 30S RIBOSOMAL PROTEIN S15 274  
53 4DR1 15 O 30S ribosomal protein S15 300852  
54 4LFA 15 O ribosomal protein S15 300852  
55 4DV4 15 O ribosomal protein S15 300852  
56 4JI0 15 O ribosomal protein S15 300852  
57 4V9S 15 AO, CO 30S Ribosomal Protein S15 274  
58 4JI2 15 O RIBOSOMAL PROTEIN S15 300852  
59 4JV5 15 O 30S ribosomal protein S15 300852  
60 4DR7 15 O 30S ribosomal protein S15 300852  
61 1J5E 15 O 30S RIBOSOMAL PROTEIN S15 274  
62 4GKK 15 O 30S ribosomal protein S15 300852  
63 4DUZ 15 O ribosomal protein S15 300852  
64 4V8G 15 AO, CO 30S Ribosomal Protein S15 300852  
65 4GKJ 15 O 30S ribosomal protein S15 300852  
66 4DV3 15 O ribosomal protein S15 300852  
67 4DV5 15 O ribosomal protein S15 300852  
68 2UUC 15 O 30S RIBOSOMAL PROTEIN S15 300852  
69 4LFC 15 O ribosomal protein S15 300852  
70 1FJG 16 O 30S RIBOSOMAL PROTEIN S15 274  
71 3T1Y 15 O 30S ribosomal protein S15 300852  
72 4JI4 15 O RIBOSOMAL PROTEIN S15 300852  
73 1VY6 15 AO, CO 30S ribosomal protein S15 300852  
74 1XMQ 17 O 30S Ribosomal Protein S15 274  
75 4DV0 15 O ribosomal protein S15 300852  
76 4V9B 15 AR, CR 30S RIBOSOMAL PROTEIN S15 300852  
77 4V6F 45 BR, CR 30S ribosomal protein S15 300852  
78 4V8F 45 BR, CR 30S RIBOSOMAL PROTEIN S15 300852  
79 4B3S 15 O 30S RIBOSOMAL PROTEIN S15 300852  
80 4DV2 15 O ribosomal protein S15 300852  
81 4DV1 15 O ribosomal protein S15 300852  
82 1N32 17 O 30S RIBOSOMAL PROTEIN S15 274  
83 1I94 15 O 30S RIBOSOMAL PROTEIN S15 274  
84 4V8H 15 AO, CO 30S Ribosomal Protein S15 300852  
85 4JI5 15 O RIBOSOMAL PROTEIN S15 300852  
86 4K0K 15 O 30S ribosomal protein S15 300852  
87 4W2E 48 o 30S ribosomal protein S15 300852  
88 4V8C 45 CR, DR 30S RIBOSOMAL PROTEIN S15 300852  
89 4LF5 15 O ribosomal protein S15 300852  
90 4V9A 15 AR, CR 30S RIBOSOMAL PROTEIN S15 300852  
91 4V5J 15 AO, CO 30S RIBOSOMAL PROTEIN S15 300852  
92 4V7Y 15 AO, CO 30S ribosomal protein S15 300852  
93 4V8E 45 BR, DR 30S RIBOSOMAL PROTEIN S15 300852  
94 4DR4 15 O 30S ribosomal protein S15 300852  
95 3OTO 15 O 30S RIBOSOMAL PROTEIN S15 300852  
96 2UU9 15 O 30S RIBOSOMAL PROTEIN S15 300852  
97 4V8Q 49 BO 30S RIBOSOMAL PROTEIN S15 300852  
98 1HR0 16 O 30S RIBOSOMAL PROTEIN S15 274  
99 4AQY 15 O 30S RIBOSOMAL PROTEIN S15 274  
100 4NXM 15 O ribosomal protein S15 300852  
101 4V5L 15 AO 30S RIBOSOMAL PROTEIN S15 300852  
102 4V7X 15 AO, CO 30S ribosomal protein S15 300852  
103 1IBL 18 O 30S RIBOSOMAL PROTEIN S15 274  
104 4V7W 15 AO, CO 30S ribosomal protein S15 300852  
105 4WUS 16 O 30S ribosomal protein S15 300852  
106 4WT8 15 O 30S ribosomal protein S15 300852  
107 4NXN 15 O ribosomal protein S15 300852  
108 1XNR 17 O 16S Ribosomal protein S15 274  
109 4LT8 15 QO, XO 30S ribosomal protein S15 300852  
110 4V51 15 AO, CO 30S RIBOSOMAL PROTEIN S15 300852  
111 4V7L 15 AO, CO 30S ribosomal protein S15 300852  
112 4V5R 15 AO, CO 30S RIBOSOMAL PROTEIN S15 300852  
113 1HNZ 16 O 30S RIBOSOMAL PROTEIN S15 274  
114 1XNQ 17 O Ribosomal protein S15 274  
115 4V8A 45 CO, DO 30S ribosomal protein S15 300852  
116 4V5K 15 AO, CO 30S RIBOSOMAL PROTEIN S15 300852  
117 4V5Q 15 AO, CO 30S RIBOSOMAL PROTEIN S15 300852  
118 4V7J 14 Ao, Bo 30S ribosomal protein S15 300852  
119 4V5C 15 AO, CO 30S RIBOSOMAL PROTEIN S15 300852  
120 4V5E 15 AO, CO 30S RIBOSOMAL PROTEIN S15 300852  
121 4L47 15 QO, XO 30S ribosomal protein S15 300852  
122 4V5P 15 AO, CO 30S RIBOSOMAL PROTEIN S15 300852  
123 4V5D 15 AO, CO 30S RIBOSOMAL PROTEIN S15 300852  
124 4V7Z 15 AO, CO 30S ribosomal protein S15 300852  
125 4V8X 15 AO, CO 30S RIBOSOMAL PROTEIN S15 300852  
126 4V5S 15 AO, CO 30S RIBOSOMAL PROTEIN S15 300852  
127 4V9I 15 AO, CO 30S Ribosomal protein S15 300852  
128 1XMO 17 O 30S ribosomal protein S15 274  
129 3T1H 15 O 30S ribosomal protein S15 300852  
130 2UXD 15 O RIBOSOMAL PROTEIN S15 300852  
131 1N33 17 O 30S RIBOSOMAL PROTEIN S15 274  
132 1IBK 16 O 30S RIBOSOMAL PROTEIN S15 274  
133 4V6G 15 AR, CR 30S RIBOSOMAL PROTEIN S15 300852  
134 4V8N 15 AO, CO 30S RIBOSOMAL PROTEIN S15 300852  
135 4V97 15 AO, CO 30S ribosomal protein S15 300852  
136 1HNW 16 O 30S RIBOSOMAL PROTEIN S15 274  
137 4V7M 15 AO, CO 30S ribosomal protein S15 300852  
138 1IBM 18 O 30S RIBOSOMAL PROTEIN S15 274  
139 4V6A 15 AO, CO 30S ribosomal protein S15 300852  
140 4V84 15 AO, CO 30S ribosomal protein S15 262724  
141 4V7K 14 Ao, Bo 30S ribosomal protein S15 300852  
142 1HNX 16 O 30S RIBOSOMAL PROTEIN S15 274  
143 4V9Q 45 BO, DO 30S ribosomal protein S15 262724  
144 4V9N 18 AO, CO 30S ribosomal protein S15 262724  
145 4P70 15 QO, XO 30S ribosomal protein S15 300852  
146 4V8U 15 AO, CO 30S RIBOSOMAL PROTEIN S15 300852  
147 4LSK 15 QO, XO 30S ribosomal protein S15 300852  
148 4P6F 15 QO, XO 30S ribosomal protein S15 300852  
149 4V67 17 AO, CO 30S ribosomal protein S15 274  
150 4V83 15 AO, CO 30S ribosomal protein S15 262724  
151 4V5F 15 AO, CO 30S RIBOSOMAL PROTEIN S15 300852  
152 1VVJ 15 QO, XO 30S ribosomal protein S15 300852  
153 4LFZ 15 QO, XO 30S ribosomal protein S15 300852  
154 2E5L 16 O 30S ribosomal protein S15 274  
155 2HHH 15 O 30S ribosomal protein S15 300852  
156 4OX9 15 O 30S ribosomal protein S15 300852  
157 2UXB 15 O RIBOSOMAL PROTEIN S15 300852  
158 1I96 15 O 30S RIBOSOMAL PROTEIN S15 274  
159 4V9K 14 AO, CO 30S ribosomal protein S15 262724  
160 1N34 16 O 30S RIBOSOMAL PROTEIN S15 274  
161 4V5A 15 AO, CO 30S RIBOSOMAL PROTEIN S15 300852  
162 4V63 17 AO, CO 30S ribosomal protein S15 262724  
163 4L71 15 QO, XO 30S ribosomal protein S15 300852  
164 4KVB 15 O 30S ribosomal protein S15 262724  
165 4XEJ 42 AS15, BS15 30S ribosomal protein S15 262724  
166 4V7P 15 AO, DO 30S ribosomal protein S15 262724  
167 4V8J 15 AO, CO 30S ribosomal protein S15 300852  
168 1N36 15 O 30S RIBOSOMAL PROTEIN S15 274  
169 2ZM6 15 O 30S ribosomal protein S15 274  
170 4LEL 15 QO, XO 30S ribosomal protein S15 300852  
171 2F4V 16 O 30S ribosomal protein S15 274  
172 4V9L 14 AO, CO 30S ribosomal protein S15 262724  
173 1FKA 15 O 30S RIBOSOMAL PROTEIN S15 274  
174 4V5G 15 AO, CO 30S RIBOSOMAL PROTEIN S15 300852  
175 1I97 15 O 30S RIBOSOMAL PROTEIN S15 274  
176 4V9J 14 AO, CO 30S ribosomal protein S15 262724  
177 1I95 15 O 30S RIBOSOMAL PROTEIN S15 274  
178 4V8O 15 AO 30S RIBOSOMAL PROTEIN S15 300852  
179 4V9M 14 AO, CO 30S ribosomal protein S15 262724  
180 4W29 14 AO, CO 30S ribosomal protein S15 262724  
181 4V4Y 17 AR 30S ribosomal protein S15 300852  
182 4V4J 48 p 30S ribosomal protein S15 262724  
183 4V4X 17 AR 30S ribosomal protein S15 300852  
184 4V4Z 18 AR 30S ribosomal protein S15 300852  
185 4V4I 48 p 30S ribosomal protein S15 262724  
186 4V4P 50 BR 30S ribosomal protein S15 300852  
187 4V4R 18 AO 30S ribosomal protein S15 300852  
188 4V4S 18 AO 30S ribosomal protein S15 300852  
189 4V4T 18 AO 30S ribosomal protein S15 300852  
190 4V49 17 AO 30S ribosomal protein S15 562  
191 4V4A 15 AO 30S ribosomal protein S15 562  
192 4V4G 15 AO, CO, EO, GO, IO 30S ribosomal protein S15 562  
193 4V5N 15 AO 30S RIBOSOMAL PROTEIN S15 300852  
194 4V5M 15 AO 30S RIBOSOMAL PROTEIN S15 300852  
195 4V68 9 AO 30S ribosomal protein S15 274  
196 4V5Z 22 Ao 40S Ribosomal protein S13e 9615  
197 2FKX 1 A 30S ribosomal protein S15 274  
198 1ML5 20 R 30S RIBOSOMAL PROTEIN S15 562  
199 1JGO 18 R 30S RIBOSOMAL PROTEIN S15 274  
200 1JGP 18 R 30S RIBOSOMAL PROTEIN S15 274  
201 1JGQ 18 R 30S RIBOSOMAL PROTEIN S15 274  
202 4V42 18 AR 30S RIBOSOMAL PROTEIN S15 274  
203 1EG0 10 F PROTEIN (S15 RIBOSOMAL PROTEIN) MODELED BY ANALOGOUS PROTEIN OF B. STEAROTHERMOPHILUS TAKEN FROM PDB ENTRY 1A32 562  
204 1AB3 1 A RIBOSOMAL RNA BINDING PROTEIN S15 274  
 
Sequence Clusters for the Sequence Entities in PDB 4JI8
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 194 28
95% 33 195 46
90% 33 195 48
70% 33 195 59
50% 43 276 35
40% 43 276 45
30% 48 326 46
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 196 26
95% 33 196 42
90% 33 196 44
70% 33 196 55
50% 37 270 42
40% 44 325 36
30% 44 325 47
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 17765
95% 33 203 31
90% 33 203 33
70% 37 282 24
50% 37 282 34
40% 37 282 44
30% 37 282 69
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 197 23
95% 33 197 38
90% 33 197 40
70% 33 197 52
50% 37 275 39
40% 37 275 51
30% 42 326 49
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 195 27
95% 33 195 47
90% 33 195 49
70% 33 195 60
50% 33 195 92
40% 33 195 116
30% 33 195 139
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 199 19
95% 35 204 30
90% 35 204 32
70% 35 204 44
50% 42 283 33
40% 42 283 43
30% 42 283 68
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 191 29
95% 33 196 44
90% 33 196 46
70% 33 196 57
50% 33 196 89
40% 33 196 114
30% 37 273 77
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 110 66
95% 33 190 49
90% 33 194 50
70% 33 194 61
50% 33 194 93
40% 33 194 117
30% 33 194 141
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 123 59
95% 30 172 70
90% 30 172 74
70% 30 172 88
50% 30 172 125
40% 30 172 146
30% 30 172 165
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 174 47
95% 31 174 69
90% 31 174 73
70% 31 174 87
50% 38 273 38
40% 38 273 49
30% 38 273 73
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 196 24
95% 33 197 35
90% 33 197 38
70% 33 197 50
50% 33 197 88
40% 37 270 53
30% 37 270 76
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 146 54
95% 33 195 45
90% 33 195 47
70% 33 195 58
50% 33 195 91
40% 33 195 115
30% 33 195 138
Entity #21: Chains: U - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 186 32
95% 33 186 51
90% 33 186 54
70% 33 186 66
50% 33 186 110
40% 33 186 133
30% 33 186 151
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 171 48
95% 30 171 72
90% 30 171 76
70% 30 171 90
50% 31 210 76
40% 31 210 101
30% 31 210 121
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 189 30
95% 33 197 36
90% 33 197 39
70% 33 197 51
50% 37 270 40
40% 37 271 52
30% 37 271 75
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 196 25
95% 33 196 40
90% 33 196 42
70% 33 196 54
50% 38 274 37
40% 38 274 48
30% 38 276 71
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 201 17
95% 40 207 29
90% 40 207 31
70% 40 207 42
50% 40 207 81
40% 40 207 108
30% 45 244 90
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 200 18
95% 34 201 33
90% 34 201 35
70% 34 201 46
50% 38 242 55
40% 38 243 71
30% 38 243 95
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 196 22
95% 34 196 37
90% 34 200 36
70% 34 200 47
50% 40 276 36
40% 41 278 46
30% 47 330 45
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 106 86
95% 33 196 43
90% 33 196 45
70% 33 196 56
50% 37 270 41
40% 37 270 54
30% 42 321 50
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.