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Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Sequence Clustering and Redundancy Reduction Results
4JI8
Cluster # 47 Members. Sequence cutoff: 70% Cluster size: 197 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4W2F 15 AO, CO 30S Ribosomal Protein S15 300852  
2 4W2G 15 AO, CO 30S Ribosomal Protein S15 300852  
3 4LFB 15 O ribosomal protein S15 300852  
4 1VY4 15 AO, CO 30S ribosomal protein S15 300852  
5 4W2I 15 AO, CO 30S Ribosomal Protein S15 300852  
6 1VY5 15 AO, CO 30S ribosomal protein S15 300852  
7 4W2H 15 AO, CO 30S Ribosomal Protein S15 300852  
8 4V8I 15 AO, CO 30S Ribosomal Protein S15 274  
9 4JI1 15 O RIBOSOMAL PROTEIN S15 300852  
10 4DR6 15 O 30S ribosomal protein S15 300852  
11 4LF7 15 O ribosomal protein S15 300852  
12 4LF8 15 O ribosomal protein S15 300852  
13 1DK1 2 A 30S RIBOSOMAL PROTEIN S15 RESIDUES 2-87 274  
14 2VQE 15 O 30S RIBOSOMAL PROTEIN S15 300852  
15 2UUB 15 O 30S RIBOSOMAL PROTEIN S15 300852  
16 4DV6 15 O ribosomal protein S15 300852  
17 4JYA 15 O 30S ribosomal protein S15 300852  
18 4DR5 15 O 30S ribosomal protein S15 300852  
19 4KHP 15 O 30S Ribosomal protein S15 300852  
20 1F7Y 2 A 30S RIBOSOMAL PROTEIN S15 274  
21 4DR2 15 O 30S ribosomal protein S15 300852  
22 4LF9 15 O ribosomal protein S15 300852  
23 4DUY 15 O ribosomal protein S15 300852  
24 4DV7 15 O ribosomal protein S15 300852  
25 4V9H 9 AO 30S ribosomal protein S15 300852  
26 4V8D 15 AR, CR 30S RIBOSOMAL PROTEIN S15 300852  
27 4DR3 15 O 30S ribosomal protein S15 300852  
28 4V90 15 AO 30S RIBOSOMAL PROTEIN S15 300852  
29 4JI3 15 O RIBOSOMAL PROTEIN S15 300852  
30 4JI6 15 O RIBOSOMAL PROTEIN S15 300852  
31 4JI8 15 O RIBOSOMAL PROTEIN S15 300852  
32 2UXC 15 O RIBOSOMAL PROTEIN S15 300852  
33 4V9R 15 AO, CO 30S Ribosomal Protein S15 274  
34 4B3M 15 O 30S RIBOSOMAL PROTEIN S15 300852  
35 4LF4 15 O ribosomal protein S15 300852  
36 4LF6 15 O ribosomal protein S15 300852  
37 4JI7 15 O RIBOSOMAL PROTEIN S15 300852  
38 4B3T 15 O 30S RIBOSOMAL PROTEIN S15 300852  
39 4V8B 15 AR, CR 30S RIBOSOMAL PROTEIN S15 300852  
40 2VQF 15 O 30S RIBOSOMAL PROTEIN S15 300852  
41 2UUA 15 O 30S RIBOSOMAL PROTEIN S15 300852  
42 4V87 45 BR, CR 30S RIBOSOMAL PROTEIN S15 300852  
43 4V95 15 AO, CO 30S Ribosomal Protein S15 274  
44 1VY7 15 AO, CO 30S ribosomal protein S15 300852  
45 1KUQ 2 A 30S RIBOSOMAL PROTEIN S15 274  
46 4B3R 15 O 30S RIBOSOMAL PROTEIN S15 300852  
47 4LNT 15 QO, XO 30S ribosomal protein S15 300852  
48 1G1X 4 B, G 30S RIBOSOMAL PROTEIN S15 274  
49 4DR1 15 O 30S ribosomal protein S15 300852  
50 4LFA 15 O ribosomal protein S15 300852  
51 4DV4 15 O ribosomal protein S15 300852  
52 4JI0 15 O ribosomal protein S15 300852  
53 4V9S 15 AO, CO 30S Ribosomal Protein S15 274  
54 4JI2 15 O RIBOSOMAL PROTEIN S15 300852  
55 4JV5 15 O 30S ribosomal protein S15 300852  
56 4DR7 15 O 30S ribosomal protein S15 300852  
57 1J5E 15 O 30S RIBOSOMAL PROTEIN S15 274  
58 4GKK 15 O 30S ribosomal protein S15 300852  
59 4DUZ 15 O ribosomal protein S15 300852  
60 4V8G 15 AO, CO 30S Ribosomal Protein S15 300852  
61 4GKJ 15 O 30S ribosomal protein S15 300852  
62 4DV3 15 O ribosomal protein S15 300852  
63 4DV5 15 O ribosomal protein S15 300852  
64 2UUC 15 O 30S RIBOSOMAL PROTEIN S15 300852  
65 4LFC 15 O ribosomal protein S15 300852  
66 1FJG 16 O 30S RIBOSOMAL PROTEIN S15 274  
67 3T1Y 15 O 30S ribosomal protein S15 300852  
68 4JI4 15 O RIBOSOMAL PROTEIN S15 300852  
69 1VY6 15 AO, CO 30S ribosomal protein S15 300852  
70 1XMQ 17 O 30S Ribosomal Protein S15 274  
71 4DV0 15 O ribosomal protein S15 300852  
72 4V9B 15 AR, CR 30S RIBOSOMAL PROTEIN S15 300852  
73 4V6F 45 BR, CR 30S ribosomal protein S15 300852  
74 4V8F 45 BR, CR 30S RIBOSOMAL PROTEIN S15 300852  
75 4B3S 15 O 30S RIBOSOMAL PROTEIN S15 300852  
76 4DV2 15 O ribosomal protein S15 300852  
77 4DV1 15 O ribosomal protein S15 300852  
78 1N32 17 O 30S RIBOSOMAL PROTEIN S15 274  
79 1I94 15 O 30S RIBOSOMAL PROTEIN S15 274  
80 4V8H 15 AO, CO 30S Ribosomal Protein S15 300852  
81 4JI5 15 O RIBOSOMAL PROTEIN S15 300852  
82 4K0K 15 O 30S ribosomal protein S15 300852  
83 4W2E 48 o 30S ribosomal protein S15 300852  
84 4V8C 45 CR, DR 30S RIBOSOMAL PROTEIN S15 300852  
85 4LF5 15 O ribosomal protein S15 300852  
86 4V9A 15 AR, CR 30S RIBOSOMAL PROTEIN S15 300852  
87 4V5J 15 AO, CO 30S RIBOSOMAL PROTEIN S15 300852  
88 4V7Y 15 AO, CO 30S ribosomal protein S15 300852  
89 4V8E 45 BR, DR 30S RIBOSOMAL PROTEIN S15 300852  
90 4DR4 15 O 30S ribosomal protein S15 300852  
91 3OTO 15 O 30S RIBOSOMAL PROTEIN S15 300852  
92 2UU9 15 O 30S RIBOSOMAL PROTEIN S15 300852  
93 4V8Q 49 BO 30S RIBOSOMAL PROTEIN S15 300852  
94 1HR0 16 O 30S RIBOSOMAL PROTEIN S15 274  
95 4AQY 15 O 30S RIBOSOMAL PROTEIN S15 274  
96 4NXM 15 O ribosomal protein S15 300852  
97 4V5L 15 AO 30S RIBOSOMAL PROTEIN S15 300852  
98 4V7X 15 AO, CO 30S ribosomal protein S15 300852  
99 1IBL 18 O 30S RIBOSOMAL PROTEIN S15 274  
100 4V7W 15 AO, CO 30S ribosomal protein S15 300852  
101 4NXN 15 O ribosomal protein S15 300852  
102 1XNR 17 O 16S Ribosomal protein S15 274  
103 4LT8 15 QO, XO 30S ribosomal protein S15 300852  
104 4V51 15 AO, CO 30S RIBOSOMAL PROTEIN S15 300852  
105 4V7L 15 AO, CO 30S ribosomal protein S15 300852  
106 4V5R 15 AO, CO 30S RIBOSOMAL PROTEIN S15 300852  
107 1HNZ 16 O 30S RIBOSOMAL PROTEIN S15 274  
108 1XNQ 17 O Ribosomal protein S15 274  
109 4V8A 45 CO, DO 30S ribosomal protein S15 300852  
110 4V5K 15 AO, CO 30S RIBOSOMAL PROTEIN S15 300852  
111 4V5Q 15 AO, CO 30S RIBOSOMAL PROTEIN S15 300852  
112 4V7J 14 Ao, Bo 30S ribosomal protein S15 300852  
113 4V5C 15 AO, CO 30S RIBOSOMAL PROTEIN S15 300852  
114 4V5E 15 AO, CO 30S RIBOSOMAL PROTEIN S15 300852  
115 4L47 15 QO, XO 30S ribosomal protein S15 300852  
116 4V5P 15 AO, CO 30S RIBOSOMAL PROTEIN S15 300852  
117 4V5D 15 AO, CO 30S RIBOSOMAL PROTEIN S15 300852  
118 4V7Z 15 AO, CO 30S ribosomal protein S15 300852  
119 4V8X 15 AO, CO 30S RIBOSOMAL PROTEIN S15 300852  
120 4V5S 15 AO, CO 30S RIBOSOMAL PROTEIN S15 300852  
121 4V9I 15 AO, CO 30S Ribosomal protein S15 300852  
122 1XMO 17 O 30S ribosomal protein S15 274  
123 3T1H 15 O 30S ribosomal protein S15 300852  
124 2UXD 15 O RIBOSOMAL PROTEIN S15 300852  
125 1N33 17 O 30S RIBOSOMAL PROTEIN S15 274  
126 1IBK 16 O 30S RIBOSOMAL PROTEIN S15 274  
127 4V6G 15 AR, CR 30S RIBOSOMAL PROTEIN S15 300852  
128 4V8N 15 AO, CO 30S RIBOSOMAL PROTEIN S15 300852  
129 4V97 15 AO, CO 30S ribosomal protein S15 300852  
130 1HNW 16 O 30S RIBOSOMAL PROTEIN S15 274  
131 4V7M 15 AO, CO 30S ribosomal protein S15 300852  
132 1IBM 18 O 30S RIBOSOMAL PROTEIN S15 274  
133 4V6A 15 AO, CO 30S ribosomal protein S15 300852  
134 4V84 15 AO, CO 30S ribosomal protein S15 262724  
135 4V7K 14 Ao, Bo 30S ribosomal protein S15 300852  
136 1HNX 16 O 30S RIBOSOMAL PROTEIN S15 274  
137 4V9Q 45 BO, DO 30S ribosomal protein S15 262724  
138 4V9N 18 AO, CO 30S ribosomal protein S15 262724  
139 4P70 15 QO, XO 30S ribosomal protein S15 300852  
140 4V8U 15 AO, CO 30S RIBOSOMAL PROTEIN S15 300852  
141 4LSK 15 QO, XO 30S ribosomal protein S15 300852  
142 4P6F 15 QO, XO 30S ribosomal protein S15 300852  
143 4V67 17 AO, CO 30S ribosomal protein S15 274  
144 4V83 15 AO, CO 30S ribosomal protein S15 262724  
145 4V5F 15 AO, CO 30S RIBOSOMAL PROTEIN S15 300852  
146 1VVJ 15 QO, XO 30S ribosomal protein S15 300852  
147 4LFZ 15 QO, XO 30S ribosomal protein S15 300852  
148 2E5L 16 O 30S ribosomal protein S15 274  
149 2HHH 15 O 30S ribosomal protein S15 300852  
150 4OX9 15 O 30S ribosomal protein S15 300852  
151 2UXB 15 O RIBOSOMAL PROTEIN S15 300852  
152 1I96 15 O 30S RIBOSOMAL PROTEIN S15 274  
153 4V9K 14 AO, CO 30S ribosomal protein S15 262724  
154 1N34 16 O 30S RIBOSOMAL PROTEIN S15 274  
155 4V5A 15 AO, CO 30S RIBOSOMAL PROTEIN S15 300852  
156 4V63 17 AO, CO 30S ribosomal protein S15 262724  
157 4L71 15 QO, XO 30S ribosomal protein S15 300852  
158 4KVB 15 O 30S ribosomal protein S15 262724  
159 4V7P 15 AO, DO 30S ribosomal protein S15 262724  
160 4V8J 15 AO, CO 30S ribosomal protein S15 300852  
161 1N36 15 O 30S RIBOSOMAL PROTEIN S15 274  
162 2ZM6 15 O 30S ribosomal protein S15 274  
163 4LEL 15 QO, XO 30S ribosomal protein S15 300852  
164 2F4V 16 O 30S ribosomal protein S15 274  
165 4V9L 14 AO, CO 30S ribosomal protein S15 262724  
166 1FKA 15 O 30S RIBOSOMAL PROTEIN S15 274  
167 4V5G 15 AO, CO 30S RIBOSOMAL PROTEIN S15 300852  
168 1I97 15 O 30S RIBOSOMAL PROTEIN S15 274  
169 4V9J 14 AO, CO 30S ribosomal protein S15 262724  
170 1I95 15 O 30S RIBOSOMAL PROTEIN S15 274  
171 4V8O 15 AO 30S RIBOSOMAL PROTEIN S15 300852  
172 4V9M 14 AO, CO 30S ribosomal protein S15 262724  
173 4W29 14 AO, CO 30S ribosomal protein S15 262724  
174 4V4Y 17 AR 30S ribosomal protein S15 300852  
175 4V4J 48 p 30S ribosomal protein S15 262724  
176 4V4X 17 AR 30S ribosomal protein S15 300852  
177 4V4Z 18 AR 30S ribosomal protein S15 300852  
178 4V4I 48 p 30S ribosomal protein S15 262724  
179 4V4P 50 BR 30S ribosomal protein S15 300852  
180 4V4R 18 AO 30S ribosomal protein S15 300852  
181 4V4S 18 AO 30S ribosomal protein S15 300852  
182 4V4T 18 AO 30S ribosomal protein S15 300852  
183 4V49 17 AO 30S ribosomal protein S15 562  
184 4V4A 15 AO 30S ribosomal protein S15 562  
185 4V4G 15 AO, CO, EO, GO, IO 30S ribosomal protein S15 562  
186 4V5N 15 AO 30S RIBOSOMAL PROTEIN S15 300852  
187 4V5M 15 AO 30S RIBOSOMAL PROTEIN S15 300852  
188 4V68 9 AO 30S ribosomal protein S15 274  
189 4V5Z 22 Ao 40S Ribosomal protein S13e 9615  
190 2FKX 1 A 30S ribosomal protein S15 274  
191 1ML5 20 R 30S RIBOSOMAL PROTEIN S15 562  
192 1JGO 18 R 30S RIBOSOMAL PROTEIN S15 274  
193 1JGP 18 R 30S RIBOSOMAL PROTEIN S15 274  
194 1JGQ 18 R 30S RIBOSOMAL PROTEIN S15 274  
195 4V42 18 AR 30S RIBOSOMAL PROTEIN S15 274  
196 1EG0 10 F PROTEIN (S15 RIBOSOMAL PROTEIN) MODELED BY ANALOGOUS PROTEIN OF B. STEAROTHERMOPHILUS TAKEN FROM PDB ENTRY 1A32 562  
197 1AB3 1 A RIBOSOMAL RNA BINDING PROTEIN S15 274  
 
Sequence Clusters for the Sequence Entities in PDB 4JI8
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 187 28
95% 29 188 47
90% 29 188 50
70% 29 188 60
50% 39 269 34
40% 39 269 45
30% 39 274 65
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 189 26
95% 29 189 43
90% 29 189 46
70% 29 189 56
50% 33 263 41
40% 40 316 35
30% 40 316 45
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 17466
95% 29 196 35
90% 29 196 37
70% 33 275 24
50% 33 275 33
40% 33 275 44
30% 33 275 69
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 190 23
95% 29 190 41
90% 29 190 44
70% 29 190 54
50% 33 268 38
40% 33 268 51
30% 38 317 48
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 188 27
95% 29 188 48
90% 29 188 51
70% 29 188 61
50% 29 188 94
40% 29 188 119
30% 29 188 142
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 192 21
95% 31 197 33
90% 31 197 35
70% 31 197 47
50% 38 276 32
40% 38 276 43
30% 38 276 66
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 184 29
95% 29 189 45
90% 29 189 48
70% 29 189 58
50% 29 189 92
40% 29 189 117
30% 33 266 76
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 21 104 55
95% 29 183 49
90% 29 187 52
70% 29 187 62
50% 29 187 95
40% 29 187 120
30% 29 187 143
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 119 49
95% 26 168 61
90% 26 168 64
70% 26 168 80
50% 26 168 117
40% 26 168 139
30% 26 168 161
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 170 37
95% 27 170 59
90% 27 170 63
70% 27 170 78
50% 34 266 37
40% 34 266 50
30% 34 266 73
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 189 24
95% 29 190 38
90% 29 190 42
70% 29 190 52
50% 29 190 91
40% 33 263 54
30% 33 263 75
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 140 42
95% 29 188 46
90% 29 188 49
70% 29 188 59
50% 29 188 93
40% 29 188 118
30% 29 188 141
Entity #21: Chains: U - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 179 34
95% 29 179 54
90% 29 179 56
70% 29 179 69
50% 29 179 105
40% 29 179 132
30% 29 179 151
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 26 166 38
95% 26 166 63
90% 26 166 66
70% 26 166 82
50% 27 205 77
40% 27 205 101
30% 27 205 120
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 182 31
95% 29 190 39
90% 29 190 43
70% 29 190 53
50% 33 263 39
40% 33 264 52
30% 33 264 74
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 189 25
95% 29 189 42
90% 29 189 45
70% 29 189 55
50% 34 267 36
40% 34 267 49
30% 34 269 72
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 194 19
95% 36 200 29
90% 36 200 30
70% 36 200 45
50% 36 200 86
40% 36 200 108
30% 41 237 93
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 193 20
95% 30 194 36
90% 30 194 38
70% 30 194 50
50% 34 235 56
40% 34 236 73
30% 34 236 96
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 189 22
95% 30 189 40
90% 30 193 39
70% 30 193 51
50% 36 269 35
40% 37 271 46
30% 43 321 44
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 102 76
95% 29 189 44
90% 29 189 47
70% 29 189 57
50% 33 263 40
40% 33 263 55
30% 38 312 51
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.