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Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Sequence Clustering and Redundancy Reduction Results
4JI8
Cluster # 38 Members. Sequence cutoff: 95% Cluster size: 200 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4Y4O 44 1m, 2m 30S ribosomal protein S13 300852  
2 4W2F 13 AM, CM 30S Ribosomal Protein S13 300852  
3 4Y4P 44 1m, 2m 30S ribosomal protein S13 300852  
4 4W2G 13 AM, CM 30S Ribosomal Protein S13 300852  
5 4LFB 13 M ribosomal protein S13 300852  
6 1VY4 13 AM, CM 30S ribosomal protein S13 300852  
7 4W2I 13 AM, CM 30S Ribosomal Protein S13 300852  
8 1VY5 13 AM, CM 30S ribosomal protein S13 300852  
9 4WQF 46 BM, DM 30S ribosomal protein S13 300852  
10 4W2H 13 AM, CM 30S Ribosomal Protein S13 300852  
11 4WPO 46 BM, DM 30S ribosomal protein S13 300852  
12 4V8I 13 AM, CM 30S Ribosomal Protein S13 274  
13 4JI1 13 M RIBOSOMAL PROTEIN S13 300852  
14 4DR6 13 M 30S ribosomal protein S13 300852  
15 4LF7 13 M ribosomal protein S13 300852  
16 4LF8 13 M ribosomal protein S13 300852  
17 4WQU 46 BM, DM 30S ribosomal protein S13 300852  
18 2VQE 13 M 30S RIBOSOMAL PROTEIN S13 300852  
19 2UUB 13 M 30S RIBOSOMAL PROTEIN S13 300852  
20 4DV6 13 M ribosomal protein S13 300852  
21 4JYA 13 M 30S ribosomal protein S13 300852  
22 4DR5 13 M 30S ribosomal protein S13 300852  
23 4KHP 13 M 30S Ribosomal protein S13 300852  
24 4DR2 13 M 30S ribosomal protein S13 300852  
25 4LF9 13 M ribosomal protein S13 300852  
26 4WQY 46 BM, DM 30S ribosomal protein S13 300852  
27 4DUY 13 M ribosomal protein S13 300852  
28 4DV7 13 M ribosomal protein S13 300852  
29 4V9H 7 AM 30S ribosomal protein S13 300852  
30 4V8D 13 AP, CP 30S RIBOSOMAL PROTEIN S13 300852  
31 4DR3 13 M 30S ribosomal protein S13 300852  
32 4V90 13 AM 30S RIBOSOMAL PROTEIN S13 300852  
33 4JI3 13 M RIBOSOMAL PROTEIN S13 300852  
34 4JI6 13 M RIBOSOMAL PROTEIN S13 300852  
35 4JI8 13 M RIBOSOMAL PROTEIN S13 300852  
36 2UXC 13 M RIBOSOMAL PROTEIN S13 300852  
37 4V9R 13 AM, CM 30S Ribosomal Protein S13 274  
38 4B3M 13 M 30S RIBOSOMAL PROTEIN S13 300852  
39 4LF4 13 M ribosomal protein S13 300852  
40 4LF6 13 M ribosomal protein S13 300852  
41 4JI7 13 M RIBOSOMAL PROTEIN S13 300852  
42 4B3T 13 M 30S RIBOSOMAL PROTEIN S13 300852  
43 4V8B 13 AP, CP 30S RIBOSOMAL PROTEIN S13 300852  
44 2VQF 13 M 30S RIBOSOMAL PROTEIN S13 300852  
45 2UUA 13 M 30S RIBOSOMAL PROTEIN S13 300852  
46 4V87 43 BP, CP 30S RIBOSOMAL PROTEIN S13 300852  
47 4V95 13 AM, CM 30S Ribosomal Protein S13 274  
48 1VY7 13 AM, CM 30S ribosomal protein S13 300852  
49 4B3R 13 M 30S RIBOSOMAL PROTEIN S13 300852  
50 4LNT 13 QM, XM 30S ribosomal protein S13 300852  
51 4DR1 13 M 30S ribosomal protein S13 300852  
52 4LFA 13 M ribosomal protein S13 300852  
53 4DV4 13 M ribosomal protein S13 300852  
54 4JI0 13 M ribosomal protein S13 300852  
55 4V9S 13 AM, CM 30S Ribosomal Protein S13 274  
56 4JI2 13 M RIBOSOMAL PROTEIN S13 300852  
57 4JV5 13 M 30S ribosomal protein S13 300852  
58 4DR7 13 M 30S ribosomal protein S13 300852  
59 1J5E 13 M 30S RIBOSOMAL PROTEIN S13 274  
60 4GKK 13 M 30S ribosomal protein S13 300852  
61 4DUZ 13 M ribosomal protein S13 300852  
62 4V8G 13 AM, CM 30S Ribosomal Protein S13 300852  
63 4GKJ 13 M 30S ribosomal protein S13 300852  
64 4DV3 13 M ribosomal protein S13 300852  
65 4DV5 13 M ribosomal protein S13 300852  
66 2UUC 13 M 30S RIBOSOMAL PROTEIN S13 300852  
67 4LFC 13 M ribosomal protein S13 300852  
68 1FJG 14 M 30S RIBOSOMAL PROTEIN S13 274  
69 3T1Y 13 M 30S ribosomal protein S13 300852  
70 4JI4 13 M RIBOSOMAL PROTEIN S13 300852  
71 1VY6 13 AM, CM 30S ribosomal protein S13 300852  
72 1XMQ 15 M 30S Ribosomal Protein S13 274  
73 4DV0 13 M ribosomal protein S13 300852  
74 4V9B 13 AP, CP 30S RIBOSOMAL PROTEIN S13 300852  
75 4V6F 43 BP, CP 30S ribosomal protein S13 300852  
76 4V8F 43 BP, CP 30S RIBOSOMAL PROTEIN S13 300852  
77 4B3S 13 M 30S RIBOSOMAL PROTEIN S13 300852  
78 4DV2 13 M ribosomal protein S13 300852  
79 4DV1 13 M ribosomal protein S13 300852  
80 1N32 15 M 30S RIBOSOMAL PROTEIN S13 274  
81 1I94 13 M 30S RIBOSOMAL PROTEIN S13 274  
82 4V8H 13 AM, CM 30S Ribosomal Protein S13 300852  
83 4JI5 13 M RIBOSOMAL PROTEIN S13 300852  
84 4K0K 13 M 30S ribosomal protein S13 300852  
85 4W2E 46 m 30S ribosomal protein S13 300852  
86 4V8C 43 CP, DP 30S RIBOSOMAL PROTEIN S13 300852  
87 4LF5 13 M ribosomal protein S13 300852  
88 4V9A 13 AP, CP 30S RIBOSOMAL PROTEIN S13 300852  
89 4V5J 13 AM, CM 30S RIBOSOMAL PROTEIN S13 300852  
90 4V7Y 13 AM, CM 30S ribosomal protein S13 300852  
91 4V8E 43 BP, DP 30S RIBOSOMAL PROTEIN S13 300852  
92 4DR4 13 M 30S ribosomal protein S13 300852  
93 3OTO 13 M 30S RIBOSOMAL PROTEIN S13 300852  
94 2UU9 13 M 30S RIBOSOMAL PROTEIN S13 300852  
95 4V8Q 47 BM 30S RIBOSOMAL PROTEIN S13 300852  
96 1HR0 14 M 30S RIBOSOMAL PROTEIN S13 274  
97 4AQY 13 M 30S RIBOSOMAL PROTEIN S13 274  
98 4NXM 13 M ribosomal protein S13 300852  
99 4V5L 13 AM 30S RIBOSOMAL PROTEIN S13 300852  
100 4V7X 13 AM, CM 30S ribosomal protein S13 300852  
101 1IBL 16 M 30S RIBOSOMAL PROTEIN S13 274  
102 4V7W 13 AM, CM 30S ribosomal protein S13 300852  
103 4WUS 14 M 30S ribosomal protein S13 300852  
104 4WT8 13 M 30S ribosomal protein S13 300852  
105 4NXN 13 M ribosomal protein S13 300852  
106 1XNR 15 M 16S Ribosomal protein S13 274  
107 4LT8 13 QM, XM 30S ribosomal protein S13 300852  
108 4V51 13 AM, CM 30S RIBOSOMAL PROTEIN S13 300852  
109 4V7L 13 AM, CM 30S ribosomal protein S13 300852  
110 4V5R 13 AM, CM 30S RIBOSOMAL PROTEIN S13 300852  
111 1HNZ 14 M 30S RIBOSOMAL PROTEIN S13 274  
112 1XNQ 15 M Ribosomal protein S13 274  
113 4V8A 43 CM, DM 30S ribosomal protein S13 300852  
114 4V5K 13 AM, CM 30S RIBOSOMAL PROTEIN S13 300852  
115 4V5Q 13 AM, CM 30S RIBOSOMAL PROTEIN S13 300852  
116 4V7J 12 Am, Bm 30S ribosomal protein S13 300852  
117 4V5C 13 AM, CM 30S RIBOSOMAL PROTEIN S13 300852  
118 4V5E 13 AM, CM 30S RIBOSOMAL PROTEIN S13 300852  
119 4L47 13 QM, XM 30S ribosomal protein S13 300852  
120 4V5P 13 AM, CM 30S RIBOSOMAL PROTEIN S13 300852  
121 4V5D 13 AM, CM 30S RIBOSOMAL PROTEIN S13 300852  
122 4V7Z 13 AM, CM 30S ribosomal protein S13 300852  
123 4V8X 13 AM, CM 30S RIBOSOMAL PROTEIN S13 300852  
124 4V5S 13 AM, CM 30S RIBOSOMAL PROTEIN S13 300852  
125 4V9I 13 AM, CM 30S Ribosomal protein S13 300852  
126 1XMO 15 M 30S ribosomal protein S13 274  
127 3T1H 13 M 30S ribosomal protein S13 300852  
128 2UXD 13 M RIBOSOMAL PROTEIN S13 300852  
129 1N33 15 M 30S RIBOSOMAL PROTEIN S13 274  
130 1IBK 14 M 30S RIBOSOMAL PROTEIN S13 274  
131 4V6G 13 AP, CP 30S RIBOSOMAL PROTEIN S13 300852  
132 4V8N 13 AM, CM 30S RIBOSOMAL PROTEIN S13 300852  
133 4V97 13 AM, CM 30S ribosomal protein S13 300852  
134 1HNW 14 M 30S RIBOSOMAL PROTEIN S13 274  
135 4V7M 13 AM, CM 30S ribosomal protein S13 300852  
136 1IBM 16 M 30S RIBOSOMAL PROTEIN S13 274  
137 4V6A 13 AM, CM 30S ribosomal protein S13 300852  
138 4V84 13 AM, CM 30S ribosomal protein S13 262724  
139 4V7K 12 Am, Bm 30S ribosomal protein S13 300852  
140 1HNX 14 M 30S RIBOSOMAL PROTEIN S13 274  
141 4V9Q 43 BM, DM 30S ribosomal protein S13 262724  
142 4YHH 13 M 30S ribosomal protein S13 262724  
143 4V9N 16 AM, CM 30S ribosomal protein S13 262724  
144 4P70 13 QM, XM 30S ribosomal protein S13 300852  
145 4V8U 13 AM, CM 30S RIBOSOMAL PROTEIN S13 300852  
146 4LSK 13 QM, XM 30S ribosomal protein S13 300852  
147 4P6F 13 QM, XM 30S ribosomal protein S13 300852  
148 4V67 15 AM, CM 30S ribosomal protein S13 274  
149 4V83 13 AM, CM 30S ribosomal protein S13 262724  
150 4V5F 13 AM, CM 30S RIBOSOMAL PROTEIN S13 300852  
151 1VVJ 13 QM, XM 30S ribosomal protein S13 300852  
152 4LFZ 13 QM, XM 30S ribosomal protein S13 300852  
153 2E5L 14 M 30S ribosomal protein S13 274  
154 2HHH 13 M 30S ribosomal protein S13 300852  
155 4OX9 13 M 30S ribosomal protein S13 300852  
156 2UXB 13 M RIBOSOMAL PROTEIN S13 300852  
157 1I96 13 M 30S RIBOSOMAL PROTEIN S13 274  
158 4V9K 12 AM, CM 30S ribosomal protein S13 262724  
159 1N34 14 M 30S RIBOSOMAL PROTEIN S13 274  
160 4V5A 13 AM, CM 30S RIBOSOMAL PROTEIN S13 300852  
161 4V63 15 AM, CM 30S ribosomal protein S13 262724  
162 4L71 13 QM, XM 30S ribosomal protein S13 300852  
163 4KVB 13 M 30S ribosomal protein S13 262724  
164 4XEJ 40 AS13, BS13 30S ribosomal protein S13 262724  
165 4V7P 13 AM, DM 30S ribosomal protein S13 262724  
166 4V8J 13 AM, CM 30S ribosomal protein S13 300852  
167 1N36 13 M 30S RIBOSOMAL PROTEIN S13 274  
168 2ZM6 13 M 30S ribosomal protein S13 274  
169 4LEL 13 QM, XM 30S ribosomal protein S13 300852  
170 2F4V 14 M 30S ribosomal protein S13 274  
171 4V9L 12 AM, CM 30S ribosomal protein S13 262724  
172 4V5G 13 AM, CM 30S RIBOSOMAL PROTEIN S13 300852  
173 1I97 13 M 30S RIBOSOMAL PROTEIN S13 274  
174 4V9J 12 AM, CM 30S ribosomal protein S13 262724  
175 1I95 13 M 30S RIBOSOMAL PROTEIN S13 274  
176 4V8O 13 AM 30S RIBOSOMAL PROTEIN S13 300852  
177 4V9M 12 AM, CM 30S ribosomal protein S13 262724  
178 4W29 12 AM, CM 30S ribosomal protein S13 262724  
179 4V4Y 15 AP 30S ribosomal protein S13 300852  
180 4V4J 46 n 30S ribosomal protein S13 262724  
181 4V4X 15 AP 30S ribosomal protein S13 300852  
182 4V4Z 16 AP 30S ribosomal protein S13 300852  
183 4V4I 46 n 30S ribosomal protein S13 262724  
184 4V4P 48 BP 30S ribosomal protein S13 300852  
185 4V4R 16 AM 30S ribosomal protein S13 300852  
186 4V4S 16 AM 30S ribosomal protein S13 300852  
187 4V4T 16 AM 30S ribosomal protein S13 300852  
188 4V49 15 AM 30S ribosomal protein S13 562  
189 4V4A 13 AM 30S ribosomal protein S13 562  
190 4V4G 13 AM, CM, EM, GM, IM 30S ribosomal protein S13 562  
191 4V5N 13 AM 30S RIBOSOMAL PROTEIN S13 300852  
192 4V5M 13 AM 30S RIBOSOMAL PROTEIN S13 300852  
193 4V68 18 AM 30S ribosomal protein S13 274  
194 2R1G 10 I 30S ribosomal protein S13 262724  
195 1ML5 18 P 30S RIBOSOMAL PROTEIN S13 562  
196 1MJ1 6 P S13 ribosomal protein TAKEN FROM PDB ENTRY 1GIX 562  
197 1JGO 16 P 30S RIBOSOMAL PROTEIN S13 274  
198 1JGP 16 P 30S RIBOSOMAL PROTEIN S13 274  
199 1JGQ 16 P 30S RIBOSOMAL PROTEIN S13 274  
200 4V42 16 AP 30S RIBOSOMAL PROTEIN S13 274  
 
Sequence Clusters for the Sequence Entities in PDB 4JI8
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 197 29
95% 35 198 46
90% 35 198 48
70% 35 198 61
50% 46 283 35
40% 46 283 45
30% 51 334 46
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 199 26
95% 35 199 40
90% 35 199 42
70% 35 199 54
50% 40 277 41
40% 47 335 35
30% 47 336 45
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 18041
95% 35 206 32
90% 35 206 34
70% 40 288 24
50% 40 289 34
40% 40 289 44
30% 40 289 69
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 200 23
95% 35 200 38
90% 35 200 40
70% 35 200 51
50% 40 282 39
40% 40 282 50
30% 45 335 49
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 198 27
95% 35 198 47
90% 35 198 49
70% 35 199 57
50% 35 199 90
40% 35 199 113
30% 35 199 137
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 202 21
95% 37 207 31
90% 37 207 33
70% 37 207 43
50% 45 290 33
40% 45 291 43
30% 45 291 67
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 194 30
95% 35 199 42
90% 35 199 44
70% 35 199 56
50% 35 199 89
40% 35 200 112
30% 40 280 76
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 113 66
95% 35 193 50
90% 35 197 50
70% 35 197 62
50% 35 197 94
40% 35 197 117
30% 35 197 139
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 125 59
95% 32 174 72
90% 32 174 76
70% 32 174 90
50% 32 174 131
40% 32 174 149
30% 32 174 164
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 202 20
95% 36 202 34
90% 36 202 37
70% 36 202 47
50% 41 280 38
40% 41 280 49
30% 41 280 73
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 199 24
95% 35 200 35
90% 35 200 38
70% 35 200 48
50% 40 276 43
40% 40 277 52
30% 40 277 75
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 149 54
95% 35 198 45
90% 35 198 47
70% 35 198 60
50% 35 198 93
40% 35 198 115
30% 35 198 138
Entity #21: Chains: U - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 189 32
95% 35 189 52
90% 35 189 55
70% 35 189 68
50% 35 189 112
40% 35 189 135
30% 35 189 153
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 173 48
95% 32 173 73
90% 32 173 77
70% 32 173 92
50% 33 214 78
40% 33 214 102
30% 33 214 123
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 192 31
95% 35 200 36
90% 35 200 39
70% 35 200 49
50% 40 277 40
40% 40 278 51
30% 40 278 74
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 199 25
95% 35 199 39
90% 35 199 41
70% 35 199 52
50% 41 281 37
40% 41 281 48
30% 41 283 72
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 204 18
95% 42 210 30
90% 42 210 32
70% 42 210 42
50% 42 210 83
40% 42 210 107
30% 48 249 87
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 203 19
95% 36 204 33
90% 36 204 35
70% 36 204 44
50% 41 247 56
40% 41 248 71
30% 41 248 95
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 199 22
95% 36 199 37
90% 36 203 36
70% 36 203 45
50% 43 283 36
40% 44 285 46
30% 50 339 44
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 109 86
95% 35 199 41
90% 35 199 43
70% 35 199 55
50% 40 277 42
40% 40 277 54
30% 45 330 50
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.