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Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Sequence Clustering and Redundancy Reduction Results
4JI8
Cluster # 41 Members. Sequence cutoff: 90% Cluster size: 196 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4W2F 13 AM, CM 30S Ribosomal Protein S13 300852  
2 4W2G 13 AM, CM 30S Ribosomal Protein S13 300852  
3 4LFB 13 M ribosomal protein S13 300852  
4 1VY4 13 AM, CM 30S ribosomal protein S13 300852  
5 4W2I 13 AM, CM 30S Ribosomal Protein S13 300852  
6 1VY5 13 AM, CM 30S ribosomal protein S13 300852  
7 4WQF 46 BM, DM 30S ribosomal protein S13 300852  
8 4W2H 13 AM, CM 30S Ribosomal Protein S13 300852  
9 4WPO 46 BM, DM 30S ribosomal protein S13 300852  
10 4V8I 13 AM, CM 30S Ribosomal Protein S13 274  
11 4JI1 13 M RIBOSOMAL PROTEIN S13 300852  
12 4DR6 13 M 30S ribosomal protein S13 300852  
13 4LF7 13 M ribosomal protein S13 300852  
14 4LF8 13 M ribosomal protein S13 300852  
15 4WQU 46 BM, DM 30S ribosomal protein S13 300852  
16 2VQE 13 M 30S RIBOSOMAL PROTEIN S13 300852  
17 2UUB 13 M 30S RIBOSOMAL PROTEIN S13 300852  
18 4DV6 13 M ribosomal protein S13 300852  
19 4JYA 13 M 30S ribosomal protein S13 300852  
20 4DR5 13 M 30S ribosomal protein S13 300852  
21 4KHP 13 M 30S Ribosomal protein S13 300852  
22 4DR2 13 M 30S ribosomal protein S13 300852  
23 4LF9 13 M ribosomal protein S13 300852  
24 4WQY 46 BM, DM 30S ribosomal protein S13 300852  
25 4DUY 13 M ribosomal protein S13 300852  
26 4DV7 13 M ribosomal protein S13 300852  
27 4V9H 7 AM 30S ribosomal protein S13 300852  
28 4V8D 13 AP, CP 30S RIBOSOMAL PROTEIN S13 300852  
29 4DR3 13 M 30S ribosomal protein S13 300852  
30 4V90 13 AM 30S RIBOSOMAL PROTEIN S13 300852  
31 4JI3 13 M RIBOSOMAL PROTEIN S13 300852  
32 4JI6 13 M RIBOSOMAL PROTEIN S13 300852  
33 4JI8 13 M RIBOSOMAL PROTEIN S13 300852  
34 2UXC 13 M RIBOSOMAL PROTEIN S13 300852  
35 4V9R 13 AM, CM 30S Ribosomal Protein S13 274  
36 4B3M 13 M 30S RIBOSOMAL PROTEIN S13 300852  
37 4LF4 13 M ribosomal protein S13 300852  
38 4LF6 13 M ribosomal protein S13 300852  
39 4JI7 13 M RIBOSOMAL PROTEIN S13 300852  
40 4B3T 13 M 30S RIBOSOMAL PROTEIN S13 300852  
41 4V8B 13 AP, CP 30S RIBOSOMAL PROTEIN S13 300852  
42 2VQF 13 M 30S RIBOSOMAL PROTEIN S13 300852  
43 2UUA 13 M 30S RIBOSOMAL PROTEIN S13 300852  
44 4V87 43 BP, CP 30S RIBOSOMAL PROTEIN S13 300852  
45 4V95 13 AM, CM 30S Ribosomal Protein S13 274  
46 1VY7 13 AM, CM 30S ribosomal protein S13 300852  
47 4B3R 13 M 30S RIBOSOMAL PROTEIN S13 300852  
48 4LNT 13 QM, XM 30S ribosomal protein S13 300852  
49 4DR1 13 M 30S ribosomal protein S13 300852  
50 4LFA 13 M ribosomal protein S13 300852  
51 4DV4 13 M ribosomal protein S13 300852  
52 4JI0 13 M ribosomal protein S13 300852  
53 4V9S 13 AM, CM 30S Ribosomal Protein S13 274  
54 4JI2 13 M RIBOSOMAL PROTEIN S13 300852  
55 4JV5 13 M 30S ribosomal protein S13 300852  
56 4DR7 13 M 30S ribosomal protein S13 300852  
57 1J5E 13 M 30S RIBOSOMAL PROTEIN S13 274  
58 4GKK 13 M 30S ribosomal protein S13 300852  
59 4DUZ 13 M ribosomal protein S13 300852  
60 4V8G 13 AM, CM 30S Ribosomal Protein S13 300852  
61 4GKJ 13 M 30S ribosomal protein S13 300852  
62 4DV3 13 M ribosomal protein S13 300852  
63 4DV5 13 M ribosomal protein S13 300852  
64 2UUC 13 M 30S RIBOSOMAL PROTEIN S13 300852  
65 4LFC 13 M ribosomal protein S13 300852  
66 1FJG 14 M 30S RIBOSOMAL PROTEIN S13 274  
67 3T1Y 13 M 30S ribosomal protein S13 300852  
68 4JI4 13 M RIBOSOMAL PROTEIN S13 300852  
69 1VY6 13 AM, CM 30S ribosomal protein S13 300852  
70 1XMQ 15 M 30S Ribosomal Protein S13 274  
71 4DV0 13 M ribosomal protein S13 300852  
72 4V9B 13 AP, CP 30S RIBOSOMAL PROTEIN S13 300852  
73 4V6F 43 BP, CP 30S ribosomal protein S13 300852  
74 4V8F 43 BP, CP 30S RIBOSOMAL PROTEIN S13 300852  
75 4B3S 13 M 30S RIBOSOMAL PROTEIN S13 300852  
76 4DV2 13 M ribosomal protein S13 300852  
77 4DV1 13 M ribosomal protein S13 300852  
78 1N32 15 M 30S RIBOSOMAL PROTEIN S13 274  
79 1I94 13 M 30S RIBOSOMAL PROTEIN S13 274  
80 4V8H 13 AM, CM 30S Ribosomal Protein S13 300852  
81 4JI5 13 M RIBOSOMAL PROTEIN S13 300852  
82 4K0K 13 M 30S ribosomal protein S13 300852  
83 4W2E 46 m 30S ribosomal protein S13 300852  
84 4V8C 43 CP, DP 30S RIBOSOMAL PROTEIN S13 300852  
85 4LF5 13 M ribosomal protein S13 300852  
86 4V9A 13 AP, CP 30S RIBOSOMAL PROTEIN S13 300852  
87 4V5J 13 AM, CM 30S RIBOSOMAL PROTEIN S13 300852  
88 4V7Y 13 AM, CM 30S ribosomal protein S13 300852  
89 4V8E 43 BP, DP 30S RIBOSOMAL PROTEIN S13 300852  
90 4DR4 13 M 30S ribosomal protein S13 300852  
91 3OTO 13 M 30S RIBOSOMAL PROTEIN S13 300852  
92 2UU9 13 M 30S RIBOSOMAL PROTEIN S13 300852  
93 4V8Q 47 BM 30S RIBOSOMAL PROTEIN S13 300852  
94 1HR0 14 M 30S RIBOSOMAL PROTEIN S13 274  
95 4AQY 13 M 30S RIBOSOMAL PROTEIN S13 274  
96 4NXM 13 M ribosomal protein S13 300852  
97 4V5L 13 AM 30S RIBOSOMAL PROTEIN S13 300852  
98 4V7X 13 AM, CM 30S ribosomal protein S13 300852  
99 1IBL 16 M 30S RIBOSOMAL PROTEIN S13 274  
100 4V7W 13 AM, CM 30S ribosomal protein S13 300852  
101 4WUS 14 M 30S ribosomal protein S13 300852  
102 4WT8 13 M 30S ribosomal protein S13 300852  
103 4NXN 13 M ribosomal protein S13 300852  
104 1XNR 15 M 16S Ribosomal protein S13 274  
105 4LT8 13 QM, XM 30S ribosomal protein S13 300852  
106 4V51 13 AM, CM 30S RIBOSOMAL PROTEIN S13 300852  
107 4V7L 13 AM, CM 30S ribosomal protein S13 300852  
108 4V5R 13 AM, CM 30S RIBOSOMAL PROTEIN S13 300852  
109 1HNZ 14 M 30S RIBOSOMAL PROTEIN S13 274  
110 1XNQ 15 M Ribosomal protein S13 274  
111 4V8A 43 CM, DM 30S ribosomal protein S13 300852  
112 4V5K 13 AM, CM 30S RIBOSOMAL PROTEIN S13 300852  
113 4V5Q 13 AM, CM 30S RIBOSOMAL PROTEIN S13 300852  
114 4V7J 12 Am, Bm 30S ribosomal protein S13 300852  
115 4V5C 13 AM, CM 30S RIBOSOMAL PROTEIN S13 300852  
116 4V5E 13 AM, CM 30S RIBOSOMAL PROTEIN S13 300852  
117 4L47 13 QM, XM 30S ribosomal protein S13 300852  
118 4V5P 13 AM, CM 30S RIBOSOMAL PROTEIN S13 300852  
119 4V5D 13 AM, CM 30S RIBOSOMAL PROTEIN S13 300852  
120 4V7Z 13 AM, CM 30S ribosomal protein S13 300852  
121 4V8X 13 AM, CM 30S RIBOSOMAL PROTEIN S13 300852  
122 4V5S 13 AM, CM 30S RIBOSOMAL PROTEIN S13 300852  
123 4V9I 13 AM, CM 30S Ribosomal protein S13 300852  
124 1XMO 15 M 30S ribosomal protein S13 274  
125 3T1H 13 M 30S ribosomal protein S13 300852  
126 2UXD 13 M RIBOSOMAL PROTEIN S13 300852  
127 1N33 15 M 30S RIBOSOMAL PROTEIN S13 274  
128 1IBK 14 M 30S RIBOSOMAL PROTEIN S13 274  
129 4V6G 13 AP, CP 30S RIBOSOMAL PROTEIN S13 300852  
130 4V8N 13 AM, CM 30S RIBOSOMAL PROTEIN S13 300852  
131 4V97 13 AM, CM 30S ribosomal protein S13 300852  
132 1HNW 14 M 30S RIBOSOMAL PROTEIN S13 274  
133 4V7M 13 AM, CM 30S ribosomal protein S13 300852  
134 1IBM 16 M 30S RIBOSOMAL PROTEIN S13 274  
135 4V6A 13 AM, CM 30S ribosomal protein S13 300852  
136 4V84 13 AM, CM 30S ribosomal protein S13 262724  
137 4V7K 12 Am, Bm 30S ribosomal protein S13 300852  
138 1HNX 14 M 30S RIBOSOMAL PROTEIN S13 274  
139 4V9Q 43 BM, DM 30S ribosomal protein S13 262724  
140 4V9N 16 AM, CM 30S ribosomal protein S13 262724  
141 4P70 13 QM, XM 30S ribosomal protein S13 300852  
142 4V8U 13 AM, CM 30S RIBOSOMAL PROTEIN S13 300852  
143 4LSK 13 QM, XM 30S ribosomal protein S13 300852  
144 4P6F 13 QM, XM 30S ribosomal protein S13 300852  
145 4V67 15 AM, CM 30S ribosomal protein S13 274  
146 4V83 13 AM, CM 30S ribosomal protein S13 262724  
147 4V5F 13 AM, CM 30S RIBOSOMAL PROTEIN S13 300852  
148 1VVJ 13 QM, XM 30S ribosomal protein S13 300852  
149 4LFZ 13 QM, XM 30S ribosomal protein S13 300852  
150 2E5L 14 M 30S ribosomal protein S13 274  
151 2HHH 13 M 30S ribosomal protein S13 300852  
152 4OX9 13 M 30S ribosomal protein S13 300852  
153 2UXB 13 M RIBOSOMAL PROTEIN S13 300852  
154 1I96 13 M 30S RIBOSOMAL PROTEIN S13 274  
155 4V9K 12 AM, CM 30S ribosomal protein S13 262724  
156 1N34 14 M 30S RIBOSOMAL PROTEIN S13 274  
157 4V5A 13 AM, CM 30S RIBOSOMAL PROTEIN S13 300852  
158 4V63 15 AM, CM 30S ribosomal protein S13 262724  
159 4L71 13 QM, XM 30S ribosomal protein S13 300852  
160 4KVB 13 M 30S ribosomal protein S13 262724  
161 4V7P 13 AM, DM 30S ribosomal protein S13 262724  
162 4V8J 13 AM, CM 30S ribosomal protein S13 300852  
163 1N36 13 M 30S RIBOSOMAL PROTEIN S13 274  
164 2ZM6 13 M 30S ribosomal protein S13 274  
165 4LEL 13 QM, XM 30S ribosomal protein S13 300852  
166 2F4V 14 M 30S ribosomal protein S13 274  
167 4V9L 12 AM, CM 30S ribosomal protein S13 262724  
168 4V5G 13 AM, CM 30S RIBOSOMAL PROTEIN S13 300852  
169 1I97 13 M 30S RIBOSOMAL PROTEIN S13 274  
170 4V9J 12 AM, CM 30S ribosomal protein S13 262724  
171 1I95 13 M 30S RIBOSOMAL PROTEIN S13 274  
172 4V8O 13 AM 30S RIBOSOMAL PROTEIN S13 300852  
173 4V9M 12 AM, CM 30S ribosomal protein S13 262724  
174 4W29 12 AM, CM 30S ribosomal protein S13 262724  
175 4V4Y 15 AP 30S ribosomal protein S13 300852  
176 4V4J 46 n 30S ribosomal protein S13 262724  
177 4V4X 15 AP 30S ribosomal protein S13 300852  
178 4V4Z 16 AP 30S ribosomal protein S13 300852  
179 4V4I 46 n 30S ribosomal protein S13 262724  
180 4V4P 48 BP 30S ribosomal protein S13 300852  
181 4V4R 16 AM 30S ribosomal protein S13 300852  
182 4V4S 16 AM 30S ribosomal protein S13 300852  
183 4V4T 16 AM 30S ribosomal protein S13 300852  
184 4V49 15 AM 30S ribosomal protein S13 562  
185 4V4A 13 AM 30S ribosomal protein S13 562  
186 4V4G 13 AM, CM, EM, GM, IM 30S ribosomal protein S13 562  
187 4V5N 13 AM 30S RIBOSOMAL PROTEIN S13 300852  
188 4V5M 13 AM 30S RIBOSOMAL PROTEIN S13 300852  
189 4V68 18 AM 30S ribosomal protein S13 274  
190 2R1G 10 I 30S ribosomal protein S13 262724  
191 1ML5 18 P 30S RIBOSOMAL PROTEIN S13 562  
192 1MJ1 6 P S13 ribosomal protein TAKEN FROM PDB ENTRY 1GIX 562  
193 1JGO 16 P 30S RIBOSOMAL PROTEIN S13 274  
194 1JGP 16 P 30S RIBOSOMAL PROTEIN S13 274  
195 1JGQ 16 P 30S RIBOSOMAL PROTEIN S13 274  
196 4V42 16 AP 30S RIBOSOMAL PROTEIN S13 274  
 
Sequence Clusters for the Sequence Entities in PDB 4JI8
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 193 28
95% 33 194 45
90% 33 194 47
70% 33 194 58
50% 43 275 34
40% 43 275 45
30% 43 280 65
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 195 26
95% 33 195 41
90% 33 195 43
70% 33 195 54
50% 37 269 41
40% 44 322 35
30% 44 322 44
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 17605
95% 33 202 32
90% 33 202 33
70% 37 281 23
50% 37 281 33
40% 37 281 44
30% 37 281 68
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 196 23
95% 33 196 39
90% 33 196 41
70% 33 196 52
50% 37 274 38
40% 37 274 50
30% 42 323 47
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 194 27
95% 33 194 46
90% 33 194 48
70% 33 194 59
50% 33 194 92
40% 33 194 115
30% 33 194 137
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 198 21
95% 35 203 30
90% 35 203 31
70% 35 203 43
50% 42 282 32
40% 42 282 42
30% 42 282 67
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 190 29
95% 33 195 43
90% 33 195 45
70% 33 195 56
50% 33 195 89
40% 33 195 113
30% 37 272 76
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 110 54
95% 33 189 48
90% 33 193 50
70% 33 193 61
50% 33 193 95
40% 33 193 120
30% 33 193 139
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 123 47
95% 30 172 58
90% 30 172 62
70% 30 172 76
50% 30 172 111
40% 30 172 137
30% 30 172 156
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 174 36
95% 31 174 57
90% 31 174 61
70% 31 174 75
50% 38 272 37
40% 38 272 49
30% 38 272 72
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 195 24
95% 33 196 36
90% 33 196 39
70% 33 196 50
50% 33 196 87
40% 37 269 52
30% 37 269 75
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 146 42
95% 33 194 44
90% 33 194 46
70% 33 194 57
50% 33 194 91
40% 33 194 114
30% 33 194 136
Entity #21: Chains: U - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 185 32
95% 33 185 51
90% 33 185 54
70% 33 185 65
50% 33 185 101
40% 33 185 127
30% 33 185 147
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 171 37
95% 30 171 59
90% 30 171 63
70% 30 171 77
50% 31 210 73
40% 31 210 97
30% 31 210 120
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 188 30
95% 33 196 37
90% 33 196 40
70% 33 196 51
50% 37 269 39
40% 37 270 51
30% 37 270 73
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 195 25
95% 33 195 40
90% 33 195 42
70% 33 195 53
50% 38 273 36
40% 38 273 48
30% 38 275 70
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 200 17
95% 40 206 29
90% 40 206 30
70% 40 206 40
50% 40 206 80
40% 40 206 105
30% 45 243 90
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 199 20
95% 34 200 33
90% 34 200 34
70% 34 200 47
50% 38 241 54
40% 38 242 70
30% 38 242 94
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 195 22
95% 34 195 38
90% 34 199 35
70% 34 199 48
50% 40 275 35
40% 41 277 46
30% 47 327 43
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 106 73
95% 33 195 42
90% 33 195 44
70% 33 195 55
50% 37 269 40
40% 37 269 53
30% 42 318 49
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.