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Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Sequence Clustering and Redundancy Reduction Results
4JI8
Cluster # 39 Members. Sequence cutoff: 90% Cluster size: 199 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4Y4O 44 1m, 2m 30S ribosomal protein S13 300852  
2 4W2F 13 AM, CM 30S Ribosomal Protein S13 300852  
3 4Y4P 44 1m, 2m 30S ribosomal protein S13 300852  
4 4W2G 13 AM, CM 30S Ribosomal Protein S13 300852  
5 4LFB 13 M ribosomal protein S13 300852  
6 1VY4 13 AM, CM 30S ribosomal protein S13 300852  
7 4W2I 13 AM, CM 30S Ribosomal Protein S13 300852  
8 1VY5 13 AM, CM 30S ribosomal protein S13 300852  
9 4WQF 46 BM, DM 30S ribosomal protein S13 300852  
10 4W2H 13 AM, CM 30S Ribosomal Protein S13 300852  
11 4WPO 46 BM, DM 30S ribosomal protein S13 300852  
12 4V8I 13 AM, CM 30S Ribosomal Protein S13 274  
13 4JI1 13 M RIBOSOMAL PROTEIN S13 300852  
14 4DR6 13 M 30S ribosomal protein S13 300852  
15 4LF7 13 M ribosomal protein S13 300852  
16 4LF8 13 M ribosomal protein S13 300852  
17 4WQU 46 BM, DM 30S ribosomal protein S13 300852  
18 2VQE 13 M 30S RIBOSOMAL PROTEIN S13 300852  
19 2UUB 13 M 30S RIBOSOMAL PROTEIN S13 300852  
20 4DV6 13 M ribosomal protein S13 300852  
21 4JYA 13 M 30S ribosomal protein S13 300852  
22 4DR5 13 M 30S ribosomal protein S13 300852  
23 4KHP 13 M 30S Ribosomal protein S13 300852  
24 4DR2 13 M 30S ribosomal protein S13 300852  
25 4LF9 13 M ribosomal protein S13 300852  
26 4WQY 46 BM, DM 30S ribosomal protein S13 300852  
27 4DUY 13 M ribosomal protein S13 300852  
28 4DV7 13 M ribosomal protein S13 300852  
29 4V9H 7 AM 30S ribosomal protein S13 300852  
30 4V8D 13 AP, CP 30S RIBOSOMAL PROTEIN S13 300852  
31 4DR3 13 M 30S ribosomal protein S13 300852  
32 4V90 13 AM 30S RIBOSOMAL PROTEIN S13 300852  
33 4JI3 13 M RIBOSOMAL PROTEIN S13 300852  
34 4JI6 13 M RIBOSOMAL PROTEIN S13 300852  
35 4JI8 13 M RIBOSOMAL PROTEIN S13 300852  
36 2UXC 13 M RIBOSOMAL PROTEIN S13 300852  
37 4V9R 13 AM, CM 30S Ribosomal Protein S13 274  
38 4B3M 13 M 30S RIBOSOMAL PROTEIN S13 300852  
39 4LF4 13 M ribosomal protein S13 300852  
40 4LF6 13 M ribosomal protein S13 300852  
41 4JI7 13 M RIBOSOMAL PROTEIN S13 300852  
42 4B3T 13 M 30S RIBOSOMAL PROTEIN S13 300852  
43 4V8B 13 AP, CP 30S RIBOSOMAL PROTEIN S13 300852  
44 2VQF 13 M 30S RIBOSOMAL PROTEIN S13 300852  
45 2UUA 13 M 30S RIBOSOMAL PROTEIN S13 300852  
46 4V87 43 BP, CP 30S RIBOSOMAL PROTEIN S13 300852  
47 4V95 13 AM, CM 30S Ribosomal Protein S13 274  
48 1VY7 13 AM, CM 30S ribosomal protein S13 300852  
49 4B3R 13 M 30S RIBOSOMAL PROTEIN S13 300852  
50 4LNT 13 QM, XM 30S ribosomal protein S13 300852  
51 4DR1 13 M 30S ribosomal protein S13 300852  
52 4LFA 13 M ribosomal protein S13 300852  
53 4DV4 13 M ribosomal protein S13 300852  
54 4JI0 13 M ribosomal protein S13 300852  
55 4V9S 13 AM, CM 30S Ribosomal Protein S13 274  
56 4JI2 13 M RIBOSOMAL PROTEIN S13 300852  
57 4JV5 13 M 30S ribosomal protein S13 300852  
58 4DR7 13 M 30S ribosomal protein S13 300852  
59 1J5E 13 M 30S RIBOSOMAL PROTEIN S13 274  
60 4GKK 13 M 30S ribosomal protein S13 300852  
61 4DUZ 13 M ribosomal protein S13 300852  
62 4V8G 13 AM, CM 30S Ribosomal Protein S13 300852  
63 4GKJ 13 M 30S ribosomal protein S13 300852  
64 4DV3 13 M ribosomal protein S13 300852  
65 4DV5 13 M ribosomal protein S13 300852  
66 2UUC 13 M 30S RIBOSOMAL PROTEIN S13 300852  
67 4LFC 13 M ribosomal protein S13 300852  
68 1FJG 14 M 30S RIBOSOMAL PROTEIN S13 274  
69 3T1Y 13 M 30S ribosomal protein S13 300852  
70 4JI4 13 M RIBOSOMAL PROTEIN S13 300852  
71 1VY6 13 AM, CM 30S ribosomal protein S13 300852  
72 1XMQ 15 M 30S Ribosomal Protein S13 274  
73 4DV0 13 M ribosomal protein S13 300852  
74 4V9B 13 AP, CP 30S RIBOSOMAL PROTEIN S13 300852  
75 4V6F 43 BP, CP 30S ribosomal protein S13 300852  
76 4V8F 43 BP, CP 30S RIBOSOMAL PROTEIN S13 300852  
77 4B3S 13 M 30S RIBOSOMAL PROTEIN S13 300852  
78 4DV2 13 M ribosomal protein S13 300852  
79 4DV1 13 M ribosomal protein S13 300852  
80 1N32 15 M 30S RIBOSOMAL PROTEIN S13 274  
81 1I94 13 M 30S RIBOSOMAL PROTEIN S13 274  
82 4V8H 13 AM, CM 30S Ribosomal Protein S13 300852  
83 4JI5 13 M RIBOSOMAL PROTEIN S13 300852  
84 4K0K 13 M 30S ribosomal protein S13 300852  
85 4W2E 46 m 30S ribosomal protein S13 300852  
86 4V8C 43 CP, DP 30S RIBOSOMAL PROTEIN S13 300852  
87 4LF5 13 M ribosomal protein S13 300852  
88 4V9A 13 AP, CP 30S RIBOSOMAL PROTEIN S13 300852  
89 4V5J 13 AM, CM 30S RIBOSOMAL PROTEIN S13 300852  
90 4V7Y 13 AM, CM 30S ribosomal protein S13 300852  
91 4V8E 43 BP, DP 30S RIBOSOMAL PROTEIN S13 300852  
92 4DR4 13 M 30S ribosomal protein S13 300852  
93 3OTO 13 M 30S RIBOSOMAL PROTEIN S13 300852  
94 2UU9 13 M 30S RIBOSOMAL PROTEIN S13 300852  
95 4V8Q 47 BM 30S RIBOSOMAL PROTEIN S13 300852  
96 1HR0 14 M 30S RIBOSOMAL PROTEIN S13 274  
97 4AQY 13 M 30S RIBOSOMAL PROTEIN S13 274  
98 4NXM 13 M ribosomal protein S13 300852  
99 4V5L 13 AM 30S RIBOSOMAL PROTEIN S13 300852  
100 4V7X 13 AM, CM 30S ribosomal protein S13 300852  
101 1IBL 16 M 30S RIBOSOMAL PROTEIN S13 274  
102 4V7W 13 AM, CM 30S ribosomal protein S13 300852  
103 4WUS 14 M 30S ribosomal protein S13 300852  
104 4WT8 13 M 30S ribosomal protein S13 300852  
105 4NXN 13 M ribosomal protein S13 300852  
106 1XNR 15 M 16S Ribosomal protein S13 274  
107 4LT8 13 QM, XM 30S ribosomal protein S13 300852  
108 4V51 13 AM, CM 30S RIBOSOMAL PROTEIN S13 300852  
109 4V7L 13 AM, CM 30S ribosomal protein S13 300852  
110 4V5R 13 AM, CM 30S RIBOSOMAL PROTEIN S13 300852  
111 1HNZ 14 M 30S RIBOSOMAL PROTEIN S13 274  
112 1XNQ 15 M Ribosomal protein S13 274  
113 4V8A 43 CM, DM 30S ribosomal protein S13 300852  
114 4V5K 13 AM, CM 30S RIBOSOMAL PROTEIN S13 300852  
115 4V5Q 13 AM, CM 30S RIBOSOMAL PROTEIN S13 300852  
116 4V7J 12 Am, Bm 30S ribosomal protein S13 300852  
117 4V5C 13 AM, CM 30S RIBOSOMAL PROTEIN S13 300852  
118 4V5E 13 AM, CM 30S RIBOSOMAL PROTEIN S13 300852  
119 4L47 13 QM, XM 30S ribosomal protein S13 300852  
120 4V5P 13 AM, CM 30S RIBOSOMAL PROTEIN S13 300852  
121 4V5D 13 AM, CM 30S RIBOSOMAL PROTEIN S13 300852  
122 4V7Z 13 AM, CM 30S ribosomal protein S13 300852  
123 4V8X 13 AM, CM 30S RIBOSOMAL PROTEIN S13 300852  
124 4V5S 13 AM, CM 30S RIBOSOMAL PROTEIN S13 300852  
125 4V9I 13 AM, CM 30S Ribosomal protein S13 300852  
126 1XMO 15 M 30S ribosomal protein S13 274  
127 3T1H 13 M 30S ribosomal protein S13 300852  
128 2UXD 13 M RIBOSOMAL PROTEIN S13 300852  
129 1N33 15 M 30S RIBOSOMAL PROTEIN S13 274  
130 1IBK 14 M 30S RIBOSOMAL PROTEIN S13 274  
131 4V6G 13 AP, CP 30S RIBOSOMAL PROTEIN S13 300852  
132 4V8N 13 AM, CM 30S RIBOSOMAL PROTEIN S13 300852  
133 4V97 13 AM, CM 30S ribosomal protein S13 300852  
134 1HNW 14 M 30S RIBOSOMAL PROTEIN S13 274  
135 4V7M 13 AM, CM 30S ribosomal protein S13 300852  
136 1IBM 16 M 30S RIBOSOMAL PROTEIN S13 274  
137 4V6A 13 AM, CM 30S ribosomal protein S13 300852  
138 4V84 13 AM, CM 30S ribosomal protein S13 262724  
139 4V7K 12 Am, Bm 30S ribosomal protein S13 300852  
140 1HNX 14 M 30S RIBOSOMAL PROTEIN S13 274  
141 4V9Q 43 BM, DM 30S ribosomal protein S13 262724  
142 4V9N 16 AM, CM 30S ribosomal protein S13 262724  
143 4P70 13 QM, XM 30S ribosomal protein S13 300852  
144 4V8U 13 AM, CM 30S RIBOSOMAL PROTEIN S13 300852  
145 4LSK 13 QM, XM 30S ribosomal protein S13 300852  
146 4P6F 13 QM, XM 30S ribosomal protein S13 300852  
147 4V67 15 AM, CM 30S ribosomal protein S13 274  
148 4V83 13 AM, CM 30S ribosomal protein S13 262724  
149 4V5F 13 AM, CM 30S RIBOSOMAL PROTEIN S13 300852  
150 1VVJ 13 QM, XM 30S ribosomal protein S13 300852  
151 4LFZ 13 QM, XM 30S ribosomal protein S13 300852  
152 2E5L 14 M 30S ribosomal protein S13 274  
153 2HHH 13 M 30S ribosomal protein S13 300852  
154 4OX9 13 M 30S ribosomal protein S13 300852  
155 2UXB 13 M RIBOSOMAL PROTEIN S13 300852  
156 1I96 13 M 30S RIBOSOMAL PROTEIN S13 274  
157 4V9K 12 AM, CM 30S ribosomal protein S13 262724  
158 1N34 14 M 30S RIBOSOMAL PROTEIN S13 274  
159 4V5A 13 AM, CM 30S RIBOSOMAL PROTEIN S13 300852  
160 4V63 15 AM, CM 30S ribosomal protein S13 262724  
161 4L71 13 QM, XM 30S ribosomal protein S13 300852  
162 4KVB 13 M 30S ribosomal protein S13 262724  
163 4XEJ 40 AS13, BS13 30S ribosomal protein S13 262724  
164 4V7P 13 AM, DM 30S ribosomal protein S13 262724  
165 4V8J 13 AM, CM 30S ribosomal protein S13 300852  
166 1N36 13 M 30S RIBOSOMAL PROTEIN S13 274  
167 2ZM6 13 M 30S ribosomal protein S13 274  
168 4LEL 13 QM, XM 30S ribosomal protein S13 300852  
169 2F4V 14 M 30S ribosomal protein S13 274  
170 4V9L 12 AM, CM 30S ribosomal protein S13 262724  
171 4V5G 13 AM, CM 30S RIBOSOMAL PROTEIN S13 300852  
172 1I97 13 M 30S RIBOSOMAL PROTEIN S13 274  
173 4V9J 12 AM, CM 30S ribosomal protein S13 262724  
174 1I95 13 M 30S RIBOSOMAL PROTEIN S13 274  
175 4V8O 13 AM 30S RIBOSOMAL PROTEIN S13 300852  
176 4V9M 12 AM, CM 30S ribosomal protein S13 262724  
177 4W29 12 AM, CM 30S ribosomal protein S13 262724  
178 4V4Y 15 AP 30S ribosomal protein S13 300852  
179 4V4J 46 n 30S ribosomal protein S13 262724  
180 4V4X 15 AP 30S ribosomal protein S13 300852  
181 4V4Z 16 AP 30S ribosomal protein S13 300852  
182 4V4I 46 n 30S ribosomal protein S13 262724  
183 4V4P 48 BP 30S ribosomal protein S13 300852  
184 4V4R 16 AM 30S ribosomal protein S13 300852  
185 4V4S 16 AM 30S ribosomal protein S13 300852  
186 4V4T 16 AM 30S ribosomal protein S13 300852  
187 4V49 15 AM 30S ribosomal protein S13 562  
188 4V4A 13 AM 30S ribosomal protein S13 562  
189 4V4G 13 AM, CM, EM, GM, IM 30S ribosomal protein S13 562  
190 4V5N 13 AM 30S RIBOSOMAL PROTEIN S13 300852  
191 4V5M 13 AM 30S RIBOSOMAL PROTEIN S13 300852  
192 4V68 18 AM 30S ribosomal protein S13 274  
193 2R1G 10 I 30S ribosomal protein S13 262724  
194 1ML5 18 P 30S RIBOSOMAL PROTEIN S13 562  
195 1MJ1 6 P S13 ribosomal protein TAKEN FROM PDB ENTRY 1GIX 562  
196 1JGO 16 P 30S RIBOSOMAL PROTEIN S13 274  
197 1JGP 16 P 30S RIBOSOMAL PROTEIN S13 274  
198 1JGQ 16 P 30S RIBOSOMAL PROTEIN S13 274  
199 4V42 16 AP 30S RIBOSOMAL PROTEIN S13 274  
 
Sequence Clusters for the Sequence Entities in PDB 4JI8
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 196 28
95% 35 197 44
90% 35 197 46
70% 35 197 58
50% 46 280 35
40% 46 280 45
30% 51 331 46
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 198 24
95% 35 198 40
90% 35 198 42
70% 35 198 54
50% 40 274 42
40% 47 330 35
30% 47 330 47
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 17888
95% 35 205 31
90% 35 205 33
70% 40 286 24
50% 40 286 34
40% 40 286 44
30% 40 286 69
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 199 21
95% 35 199 37
90% 35 199 39
70% 35 199 51
50% 40 279 39
40% 40 279 51
30% 45 331 49
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 197 25
95% 35 197 45
90% 35 197 47
70% 35 197 59
50% 35 197 92
40% 35 197 114
30% 35 197 137
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 201 19
95% 37 206 30
90% 37 206 32
70% 37 206 43
50% 45 287 33
40% 45 287 43
30% 45 287 68
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 193 29
95% 35 198 42
90% 35 198 44
70% 35 198 56
50% 35 198 90
40% 35 198 112
30% 40 277 75
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 112 66
95% 35 192 49
90% 35 196 48
70% 35 196 60
50% 35 196 93
40% 35 196 116
30% 35 196 139
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 125 58
95% 32 174 71
90% 32 174 75
70% 32 174 88
50% 32 174 128
40% 32 174 146
30% 32 174 164
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 176 45
95% 33 176 67
90% 33 176 70
70% 33 176 83
50% 41 277 38
40% 41 277 48
30% 41 277 72
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 198 22
95% 35 199 34
90% 35 199 37
70% 35 199 48
50% 35 199 88
40% 40 274 53
30% 40 274 74
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 148 54
95% 35 197 43
90% 35 197 45
70% 35 197 57
50% 35 197 91
40% 35 197 113
30% 35 197 136
Entity #21: Chains: U - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 188 31
95% 35 188 51
90% 35 188 54
70% 35 188 66
50% 35 188 111
40% 35 188 133
30% 35 188 153
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 173 48
95% 32 173 72
90% 32 173 76
70% 32 173 90
50% 33 213 75
40% 33 213 102
30% 33 213 122
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 191 30
95% 35 199 35
90% 35 199 38
70% 35 199 49
50% 40 274 40
40% 40 275 52
30% 40 275 73
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 198 23
95% 35 198 39
90% 35 198 41
70% 35 198 53
50% 41 278 37
40% 41 278 47
30% 41 280 71
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 203 17
95% 42 209 29
90% 42 209 31
70% 42 209 42
50% 42 209 80
40% 42 209 106
30% 48 247 87
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 202 18
95% 36 203 32
90% 36 203 34
70% 36 203 45
50% 41 245 53
40% 41 246 70
30% 41 246 94
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 198 20
95% 36 198 36
90% 36 202 35
70% 36 202 46
50% 43 280 36
40% 44 282 46
30% 50 335 44
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 108 87
95% 35 198 41
90% 35 198 43
70% 35 198 55
50% 40 274 41
40% 40 274 54
30% 45 326 51
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.