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Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Sequence Clustering and Redundancy Reduction Results
4JI8
Cluster # 23 Members. Sequence cutoff: 100% Cluster size: 190 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4W2F 13 AM, CM 30S Ribosomal Protein S13 300852  
2 4W2G 13 AM, CM 30S Ribosomal Protein S13 300852  
3 4LFB 13 M ribosomal protein S13 300852  
4 1VY4 13 AM, CM 30S ribosomal protein S13 300852  
5 4W2I 13 AM, CM 30S Ribosomal Protein S13 300852  
6 1VY5 13 AM, CM 30S ribosomal protein S13 300852  
7 4W2H 13 AM, CM 30S Ribosomal Protein S13 300852  
8 4V8I 13 AM, CM 30S Ribosomal Protein S13 274  
9 4JI1 13 M RIBOSOMAL PROTEIN S13 300852  
10 4DR6 13 M 30S ribosomal protein S13 300852  
11 4LF7 13 M ribosomal protein S13 300852  
12 4LF8 13 M ribosomal protein S13 300852  
13 2VQE 13 M 30S RIBOSOMAL PROTEIN S13 300852  
14 2UUB 13 M 30S RIBOSOMAL PROTEIN S13 300852  
15 4DV6 13 M ribosomal protein S13 300852  
16 4JYA 13 M 30S ribosomal protein S13 300852  
17 4DR5 13 M 30S ribosomal protein S13 300852  
18 4KHP 13 M 30S Ribosomal protein S13 300852  
19 4DR2 13 M 30S ribosomal protein S13 300852  
20 4LF9 13 M ribosomal protein S13 300852  
21 4DUY 13 M ribosomal protein S13 300852  
22 4DV7 13 M ribosomal protein S13 300852  
23 4V9H 7 AM 30S ribosomal protein S13 300852  
24 4V8D 13 AP, CP 30S RIBOSOMAL PROTEIN S13 300852  
25 4DR3 13 M 30S ribosomal protein S13 300852  
26 4V90 13 AM 30S RIBOSOMAL PROTEIN S13 300852  
27 4JI3 13 M RIBOSOMAL PROTEIN S13 300852  
28 4JI6 13 M RIBOSOMAL PROTEIN S13 300852  
29 4JI8 13 M RIBOSOMAL PROTEIN S13 300852  
30 2UXC 13 M RIBOSOMAL PROTEIN S13 300852  
31 4V9R 13 AM, CM 30S Ribosomal Protein S13 274  
32 4B3M 13 M 30S RIBOSOMAL PROTEIN S13 300852  
33 4LF4 13 M ribosomal protein S13 300852  
34 4LF6 13 M ribosomal protein S13 300852  
35 4JI7 13 M RIBOSOMAL PROTEIN S13 300852  
36 4B3T 13 M 30S RIBOSOMAL PROTEIN S13 300852  
37 4V8B 13 AP, CP 30S RIBOSOMAL PROTEIN S13 300852  
38 2VQF 13 M 30S RIBOSOMAL PROTEIN S13 300852  
39 2UUA 13 M 30S RIBOSOMAL PROTEIN S13 300852  
40 4V87 43 BP, CP 30S RIBOSOMAL PROTEIN S13 300852  
41 4V95 13 AM, CM 30S Ribosomal Protein S13 274  
42 1VY7 13 AM, CM 30S ribosomal protein S13 300852  
43 4B3R 13 M 30S RIBOSOMAL PROTEIN S13 300852  
44 4LNT 13 QM, XM 30S ribosomal protein S13 300852  
45 4DR1 13 M 30S ribosomal protein S13 300852  
46 4LFA 13 M ribosomal protein S13 300852  
47 4DV4 13 M ribosomal protein S13 300852  
48 4JI0 13 M ribosomal protein S13 300852  
49 4V9S 13 AM, CM 30S Ribosomal Protein S13 274  
50 4JI2 13 M RIBOSOMAL PROTEIN S13 300852  
51 4JV5 13 M 30S ribosomal protein S13 300852  
52 4DR7 13 M 30S ribosomal protein S13 300852  
53 1J5E 13 M 30S RIBOSOMAL PROTEIN S13 274  
54 4GKK 13 M 30S ribosomal protein S13 300852  
55 4DUZ 13 M ribosomal protein S13 300852  
56 4V8G 13 AM, CM 30S Ribosomal Protein S13 300852  
57 4GKJ 13 M 30S ribosomal protein S13 300852  
58 4DV3 13 M ribosomal protein S13 300852  
59 4DV5 13 M ribosomal protein S13 300852  
60 2UUC 13 M 30S RIBOSOMAL PROTEIN S13 300852  
61 4LFC 13 M ribosomal protein S13 300852  
62 1FJG 14 M 30S RIBOSOMAL PROTEIN S13 274  
63 3T1Y 13 M 30S ribosomal protein S13 300852  
64 4JI4 13 M RIBOSOMAL PROTEIN S13 300852  
65 1VY6 13 AM, CM 30S ribosomal protein S13 300852  
66 1XMQ 15 M 30S Ribosomal Protein S13 274  
67 4DV0 13 M ribosomal protein S13 300852  
68 4V9B 13 AP, CP 30S RIBOSOMAL PROTEIN S13 300852  
69 4V6F 43 BP, CP 30S ribosomal protein S13 300852  
70 4V8F 43 BP, CP 30S RIBOSOMAL PROTEIN S13 300852  
71 4B3S 13 M 30S RIBOSOMAL PROTEIN S13 300852  
72 4DV2 13 M ribosomal protein S13 300852  
73 4DV1 13 M ribosomal protein S13 300852  
74 1N32 15 M 30S RIBOSOMAL PROTEIN S13 274  
75 1I94 13 M 30S RIBOSOMAL PROTEIN S13 274  
76 4V8H 13 AM, CM 30S Ribosomal Protein S13 300852  
77 4JI5 13 M RIBOSOMAL PROTEIN S13 300852  
78 4K0K 13 M 30S ribosomal protein S13 300852  
79 4W2E 46 m 30S ribosomal protein S13 300852  
80 4V8C 43 CP, DP 30S RIBOSOMAL PROTEIN S13 300852  
81 4LF5 13 M ribosomal protein S13 300852  
82 4V9A 13 AP, CP 30S RIBOSOMAL PROTEIN S13 300852  
83 4V5J 13 AM, CM 30S RIBOSOMAL PROTEIN S13 300852  
84 4V7Y 13 AM, CM 30S ribosomal protein S13 300852  
85 4V8E 43 BP, DP 30S RIBOSOMAL PROTEIN S13 300852  
86 4DR4 13 M 30S ribosomal protein S13 300852  
87 3OTO 13 M 30S RIBOSOMAL PROTEIN S13 300852  
88 2UU9 13 M 30S RIBOSOMAL PROTEIN S13 300852  
89 4V8Q 47 BM 30S RIBOSOMAL PROTEIN S13 300852  
90 1HR0 14 M 30S RIBOSOMAL PROTEIN S13 274  
91 4AQY 13 M 30S RIBOSOMAL PROTEIN S13 274  
92 4NXM 13 M ribosomal protein S13 300852  
93 4V5L 13 AM 30S RIBOSOMAL PROTEIN S13 300852  
94 4V7X 13 AM, CM 30S ribosomal protein S13 300852  
95 1IBL 16 M 30S RIBOSOMAL PROTEIN S13 274  
96 4V7W 13 AM, CM 30S ribosomal protein S13 300852  
97 4NXN 13 M ribosomal protein S13 300852  
98 1XNR 15 M 16S Ribosomal protein S13 274  
99 4LT8 13 QM, XM 30S ribosomal protein S13 300852  
100 4V51 13 AM, CM 30S RIBOSOMAL PROTEIN S13 300852  
101 4V7L 13 AM, CM 30S ribosomal protein S13 300852  
102 4V5R 13 AM, CM 30S RIBOSOMAL PROTEIN S13 300852  
103 1HNZ 14 M 30S RIBOSOMAL PROTEIN S13 274  
104 1XNQ 15 M Ribosomal protein S13 274  
105 4V8A 43 CM, DM 30S ribosomal protein S13 300852  
106 4V5K 13 AM, CM 30S RIBOSOMAL PROTEIN S13 300852  
107 4V5Q 13 AM, CM 30S RIBOSOMAL PROTEIN S13 300852  
108 4V7J 12 Am, Bm 30S ribosomal protein S13 300852  
109 4V5C 13 AM, CM 30S RIBOSOMAL PROTEIN S13 300852  
110 4V5E 13 AM, CM 30S RIBOSOMAL PROTEIN S13 300852  
111 4L47 13 QM, XM 30S ribosomal protein S13 300852  
112 4V5P 13 AM, CM 30S RIBOSOMAL PROTEIN S13 300852  
113 4V5D 13 AM, CM 30S RIBOSOMAL PROTEIN S13 300852  
114 4V7Z 13 AM, CM 30S ribosomal protein S13 300852  
115 4V8X 13 AM, CM 30S RIBOSOMAL PROTEIN S13 300852  
116 4V5S 13 AM, CM 30S RIBOSOMAL PROTEIN S13 300852  
117 4V9I 13 AM, CM 30S Ribosomal protein S13 300852  
118 1XMO 15 M 30S ribosomal protein S13 274  
119 3T1H 13 M 30S ribosomal protein S13 300852  
120 2UXD 13 M RIBOSOMAL PROTEIN S13 300852  
121 1N33 15 M 30S RIBOSOMAL PROTEIN S13 274  
122 1IBK 14 M 30S RIBOSOMAL PROTEIN S13 274  
123 4V6G 13 AP, CP 30S RIBOSOMAL PROTEIN S13 300852  
124 4V8N 13 AM, CM 30S RIBOSOMAL PROTEIN S13 300852  
125 4V97 13 AM, CM 30S ribosomal protein S13 300852  
126 1HNW 14 M 30S RIBOSOMAL PROTEIN S13 274  
127 4V7M 13 AM, CM 30S ribosomal protein S13 300852  
128 1IBM 16 M 30S RIBOSOMAL PROTEIN S13 274  
129 4V6A 13 AM, CM 30S ribosomal protein S13 300852  
130 4V84 13 AM, CM 30S ribosomal protein S13 262724  
131 4V7K 12 Am, Bm 30S ribosomal protein S13 300852  
132 1HNX 14 M 30S RIBOSOMAL PROTEIN S13 274  
133 4V9Q 43 BM, DM 30S ribosomal protein S13 262724  
134 4V9N 16 AM, CM 30S ribosomal protein S13 262724  
135 4P70 13 QM, XM 30S ribosomal protein S13 300852  
136 4V8U 13 AM, CM 30S RIBOSOMAL PROTEIN S13 300852  
137 4LSK 13 QM, XM 30S ribosomal protein S13 300852  
138 4P6F 13 QM, XM 30S ribosomal protein S13 300852  
139 4V67 15 AM, CM 30S ribosomal protein S13 274  
140 4V83 13 AM, CM 30S ribosomal protein S13 262724  
141 4V5F 13 AM, CM 30S RIBOSOMAL PROTEIN S13 300852  
142 1VVJ 13 QM, XM 30S ribosomal protein S13 300852  
143 4LFZ 13 QM, XM 30S ribosomal protein S13 300852  
144 2E5L 14 M 30S ribosomal protein S13 274  
145 2HHH 13 M 30S ribosomal protein S13 300852  
146 4OX9 13 M 30S ribosomal protein S13 300852  
147 2UXB 13 M RIBOSOMAL PROTEIN S13 300852  
148 1I96 13 M 30S RIBOSOMAL PROTEIN S13 274  
149 4V9K 12 AM, CM 30S ribosomal protein S13 262724  
150 1N34 14 M 30S RIBOSOMAL PROTEIN S13 274  
151 4V5A 13 AM, CM 30S RIBOSOMAL PROTEIN S13 300852  
152 4V63 15 AM, CM 30S ribosomal protein S13 262724  
153 4L71 13 QM, XM 30S ribosomal protein S13 300852  
154 4KVB 13 M 30S ribosomal protein S13 262724  
155 4V7P 13 AM, DM 30S ribosomal protein S13 262724  
156 4V8J 13 AM, CM 30S ribosomal protein S13 300852  
157 1N36 13 M 30S RIBOSOMAL PROTEIN S13 274  
158 2ZM6 13 M 30S ribosomal protein S13 274  
159 4LEL 13 QM, XM 30S ribosomal protein S13 300852  
160 2F4V 14 M 30S ribosomal protein S13 274  
161 4V9L 12 AM, CM 30S ribosomal protein S13 262724  
162 4V5G 13 AM, CM 30S RIBOSOMAL PROTEIN S13 300852  
163 1I97 13 M 30S RIBOSOMAL PROTEIN S13 274  
164 4V9J 12 AM, CM 30S ribosomal protein S13 262724  
165 1I95 13 M 30S RIBOSOMAL PROTEIN S13 274  
166 4V8O 13 AM 30S RIBOSOMAL PROTEIN S13 300852  
167 4V9M 12 AM, CM 30S ribosomal protein S13 262724  
168 4W29 12 AM, CM 30S ribosomal protein S13 262724  
169 4V4Y 15 AP 30S ribosomal protein S13 300852  
170 4V4J 46 n 30S ribosomal protein S13 262724  
171 4V4X 15 AP 30S ribosomal protein S13 300852  
172 4V4Z 16 AP 30S ribosomal protein S13 300852  
173 4V4I 46 n 30S ribosomal protein S13 262724  
174 4V4P 48 BP 30S ribosomal protein S13 300852  
175 4V4R 16 AM 30S ribosomal protein S13 300852  
176 4V4S 16 AM 30S ribosomal protein S13 300852  
177 4V4T 16 AM 30S ribosomal protein S13 300852  
178 4V49 15 AM 30S ribosomal protein S13 562  
179 4V4A 13 AM 30S ribosomal protein S13 562  
180 4V4G 13 AM, CM, EM, GM, IM 30S ribosomal protein S13 562  
181 4V5N 13 AM 30S RIBOSOMAL PROTEIN S13 300852  
182 4V5M 13 AM 30S RIBOSOMAL PROTEIN S13 300852  
183 4V68 18 AM 30S ribosomal protein S13 274  
184 2R1G 10 I 30S ribosomal protein S13 262724  
185 1ML5 18 P 30S RIBOSOMAL PROTEIN S13 562  
186 1MJ1 6 P S13 ribosomal protein TAKEN FROM PDB ENTRY 1GIX 562  
187 1JGO 16 P 30S RIBOSOMAL PROTEIN S13 274  
188 1JGP 16 P 30S RIBOSOMAL PROTEIN S13 274  
189 1JGQ 16 P 30S RIBOSOMAL PROTEIN S13 274  
190 4V42 16 AP 30S RIBOSOMAL PROTEIN S13 274  
 
Sequence Clusters for the Sequence Entities in PDB 4JI8
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 187 28
95% 29 188 47
90% 29 188 50
70% 29 188 60
50% 39 269 34
40% 39 269 45
30% 39 274 65
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 189 26
95% 29 189 43
90% 29 189 46
70% 29 189 56
50% 33 263 41
40% 40 316 35
30% 40 316 45
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 17466
95% 29 196 35
90% 29 196 37
70% 33 275 24
50% 33 275 33
40% 33 275 44
30% 33 275 69
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 190 23
95% 29 190 41
90% 29 190 44
70% 29 190 54
50% 33 268 38
40% 33 268 51
30% 38 317 48
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 188 27
95% 29 188 48
90% 29 188 51
70% 29 188 61
50% 29 188 94
40% 29 188 119
30% 29 188 142
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 192 21
95% 31 197 33
90% 31 197 35
70% 31 197 47
50% 38 276 32
40% 38 276 43
30% 38 276 66
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 184 29
95% 29 189 45
90% 29 189 48
70% 29 189 58
50% 29 189 92
40% 29 189 117
30% 33 266 76
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 21 104 55
95% 29 183 49
90% 29 187 52
70% 29 187 62
50% 29 187 95
40% 29 187 120
30% 29 187 143
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 119 49
95% 26 168 61
90% 26 168 64
70% 26 168 80
50% 26 168 117
40% 26 168 139
30% 26 168 161
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 170 37
95% 27 170 59
90% 27 170 63
70% 27 170 78
50% 34 266 37
40% 34 266 50
30% 34 266 73
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 189 24
95% 29 190 38
90% 29 190 42
70% 29 190 52
50% 29 190 91
40% 33 263 54
30% 33 263 75
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 140 42
95% 29 188 46
90% 29 188 49
70% 29 188 59
50% 29 188 93
40% 29 188 118
30% 29 188 141
Entity #21: Chains: U - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 179 34
95% 29 179 54
90% 29 179 56
70% 29 179 69
50% 29 179 105
40% 29 179 132
30% 29 179 151
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 26 166 38
95% 26 166 63
90% 26 166 66
70% 26 166 82
50% 27 205 77
40% 27 205 101
30% 27 205 120
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 182 31
95% 29 190 39
90% 29 190 43
70% 29 190 53
50% 33 263 39
40% 33 264 52
30% 33 264 74
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 189 25
95% 29 189 42
90% 29 189 45
70% 29 189 55
50% 34 267 36
40% 34 267 49
30% 34 269 72
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 194 19
95% 36 200 29
90% 36 200 30
70% 36 200 45
50% 36 200 86
40% 36 200 108
30% 41 237 93
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 193 20
95% 30 194 36
90% 30 194 38
70% 30 194 50
50% 34 235 56
40% 34 236 73
30% 34 236 96
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 189 22
95% 30 189 40
90% 30 193 39
70% 30 193 51
50% 36 269 35
40% 37 271 46
30% 43 321 44
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 102 76
95% 29 189 44
90% 29 189 47
70% 29 189 57
50% 33 263 40
40% 33 263 55
30% 38 312 51
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.