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Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Sequence Clustering and Redundancy Reduction Results
4JI8
Cluster # 56 Members. Sequence cutoff: 70% Cluster size: 191 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4W2F 11 AK, CK 30S Ribosomal Protein S11 300852  
2 4W2G 11 AK, CK 30S Ribosomal Protein S11 300852  
3 4LFB 11 K ribosomal protein S11 300852  
4 1VY4 11 AK, CK 30S ribosomal protein S11 300852  
5 4W2I 11 AK, CK 30S Ribosomal Protein S11 300852  
6 1VY5 11 AK, CK 30S ribosomal protein S11 300852  
7 4W2H 11 AK, CK 30S Ribosomal Protein S11 300852  
8 4V8I 11 AK, CK 30S Ribosomal Protein S11 274  
9 4JI1 11 K RIBOSOMAL PROTEIN S11 300852  
10 4DR6 11 K 30S ribosomal protein S11 300852  
11 4LF7 11 K ribosomal protein S11 300852  
12 4LF8 11 K ribosomal protein S11 300852  
13 2VQE 11 K 30S RIBOSOMAL PROTEIN S11 300852  
14 2UUB 11 K 30S RIBOSOMAL PROTEIN S11 300852  
15 4DV6 11 K ribosomal protein S11 300852  
16 4JYA 11 K 30S ribosomal protein S11 300852  
17 4DR5 11 K 30S ribosomal protein S11 300852  
18 4KHP 11 K 30S Ribosomal protein S11 300852  
19 4DR2 11 K 30S ribosomal protein S11 300852  
20 4LF9 11 K ribosomal protein S11 300852  
21 4DUY 11 K ribosomal protein S11 300852  
22 4DV7 11 K ribosomal protein S11 300852  
23 4V9H 5 AK 30S ribosomal protein S11 300852  
24 4V8D 11 AN, CN 30S RIBOSOMAL PROTEIN S11 300852  
25 4DR3 11 K 30S ribosomal protein S11 300852  
26 4V90 11 AK 30S RIBOSOMAL PROTEIN S11 300852  
27 4JI3 11 K RIBOSOMAL PROTEIN S11 300852  
28 4JI6 11 K RIBOSOMAL PROTEIN S11 300852  
29 4JI8 11 K RIBOSOMAL PROTEIN S11 300852  
30 2UXC 11 K RIBOSOMAL PROTEIN S11 300852  
31 4V9R 11 AK, CK 30S Ribosomal Protein S11 274  
32 4B3M 11 K 30S RIBOSOMAL PROTEIN S11 300852  
33 4LF4 11 K ribosomal protein S11 300852  
34 4LF6 11 K ribosomal protein S11 300852  
35 4JI7 11 K RIBOSOMAL PROTEIN S11 300852  
36 4B3T 11 K 30S RIBOSOMAL PROTEIN S11 300852  
37 4V8B 11 AN, CN 30S RIBOSOMAL PROTEIN S11 300852  
38 2VQF 11 K 30S RIBOSOMAL PROTEIN S11 300852  
39 2UUA 11 K 30S RIBOSOMAL PROTEIN S11 300852  
40 4V87 41 BN, CN 30S RIBOSOMAL PROTEIN S11 300852  
41 4V95 11 AK, CK 30S Ribosomal Protein S11 274  
42 1VY7 11 AK, CK 30S ribosomal protein S11 300852  
43 4B3R 11 K 30S RIBOSOMAL PROTEIN S11 300852  
44 4LNT 11 QK, XK 30S ribosomal protein S11 300852  
45 4DR1 11 K 30S ribosomal protein S11 300852  
46 4LFA 11 K ribosomal protein S11 300852  
47 4DV4 11 K ribosomal protein S11 300852  
48 4JI0 11 K ribosomal protein S11 300852  
49 4V9S 11 AK, CK 30S Ribosomal Protein S11 274  
50 4JI2 11 K RIBOSOMAL PROTEIN S11 300852  
51 4JV5 11 K 30S ribosomal protein S11 300852  
52 4DR7 11 K 30S ribosomal protein S11 300852  
53 1J5E 11 K 30S RIBOSOMAL PROTEIN S11 274  
54 4GKK 11 K 30S ribosomal protein S11 300852  
55 4DUZ 11 K ribosomal protein S11 300852  
56 4V8G 11 AK, CK 30S Ribosomal Protein S11 300852  
57 4GKJ 11 K 30S ribosomal protein S11 300852  
58 4DV3 11 K ribosomal protein S11 300852  
59 4DV5 11 K ribosomal protein S11 300852  
60 2UUC 11 K 30S RIBOSOMAL PROTEIN S11 300852  
61 4LFC 11 K ribosomal protein S11 300852  
62 1FJG 12 K 30S RIBOSOMAL PROTEIN S11 274  
63 3T1Y 11 K 30S ribosomal protein S11 300852  
64 4JI4 11 K RIBOSOMAL PROTEIN S11 300852  
65 1VY6 11 AK, CK 30S ribosomal protein S11 300852  
66 1XMQ 13 K 30S Ribosomal Protein S11 274  
67 4DV0 11 K ribosomal protein S11 300852  
68 4V9B 11 AN, CN 30S RIBOSOMAL PROTEIN S11 300852  
69 4V6F 41 BN, CN 30S ribosomal protein S11 300852  
70 4V8F 41 BN, CN 30S RIBOSOMAL PROTEIN S11 300852  
71 4B3S 11 K 30S RIBOSOMAL PROTEIN S11 300852  
72 4DV2 11 K ribosomal protein S11 300852  
73 4DV1 11 K ribosomal protein S11 300852  
74 1N32 13 K 30S RIBOSOMAL PROTEIN S11 274  
75 1I94 11 K 30S RIBOSOMAL PROTEIN S11 274  
76 4V8H 11 AK, CK 30S Ribosomal Protein S11 300852  
77 4JI5 11 K RIBOSOMAL PROTEIN S11 300852  
78 4K0K 11 K 30S ribosomal protein S11 300852  
79 4W2E 44 k 30S ribosomal protein S11 300852  
80 4V8C 41 CN, DN 30S RIBOSOMAL PROTEIN S11 300852  
81 4LF5 11 K ribosomal protein S11 300852  
82 4V9A 11 AN, CN 30S RIBOSOMAL PROTEIN S11 300852  
83 4V5J 11 AK, CK 30S RIBOSOMAL PROTEIN S11 300852  
84 4V7Y 11 AK, CK 30S ribosomal protein S11 300852  
85 4V8E 41 BN, DN 30S RIBOSOMAL PROTEIN S11 300852  
86 4DR4 11 K 30S ribosomal protein S11 300852  
87 3OTO 11 K 30S RIBOSOMAL PROTEIN S11 300852  
88 2UU9 11 K 30S RIBOSOMAL PROTEIN S11 300852  
89 4V8Q 45 BK 30S RIBOSOMAL PROTEIN S11 300852  
90 1HR0 12 K 30S RIBOSOMAL PROTEIN S11 274  
91 4AQY 11 K 30S RIBOSOMAL PROTEIN S11 274  
92 4NXM 11 K ribosomal protein S11 300852  
93 4V5L 11 AK 30S RIBOSOMAL PROTEIN S11 300852  
94 4V7X 11 AK, CK 30S ribosomal protein S11 300852  
95 1IBL 14 K 30S RIBOSOMAL PROTEIN S11 274  
96 4V7W 11 AK, CK 30S ribosomal protein S11 300852  
97 4WUS 12 K 30S ribosomal protein S11 300852  
98 4WT8 11 K 30S ribosomal protein S11 300852  
99 4NXN 11 K ribosomal protein S11 300852  
100 1XNR 13 K 16S Ribosomal protein S11 274  
101 4LT8 11 QK, XK 30S ribosomal protein S11 300852  
102 4V51 11 AK, CK 30S RIBOSOMAL PROTEIN S11 300852  
103 4V7L 11 AK, CK 30S ribosomal protein S11 300852  
104 4V5R 11 AK, CK 30S RIBOSOMAL PROTEIN S11 300852  
105 1HNZ 12 K 30S RIBOSOMAL PROTEIN S11 274  
106 1XNQ 13 K Ribosomal protein S11 274  
107 4V8A 41 CK, DK 30S ribosomal protein S11 300852  
108 4V5K 11 AK, CK 30S RIBOSOMAL PROTEIN S11 300852  
109 4V5Q 11 AK, CK 30S RIBOSOMAL PROTEIN S11 300852  
110 4V7J 10 Ak, Bk 30S ribosomal protein S11 300852  
111 4V5C 11 AK, CK 30S RIBOSOMAL PROTEIN S11 300852  
112 4V5E 11 AK, CK 30S RIBOSOMAL PROTEIN S11 300852  
113 4L47 11 QK, XK 30S ribosomal protein S11 300852  
114 4V5P 11 AK, CK 30S RIBOSOMAL PROTEIN S11 300852  
115 4V5D 11 AK, CK 30S RIBOSOMAL PROTEIN S11 300852  
116 4V7Z 11 AK, CK 30S ribosomal protein S11 300852  
117 4V8X 11 AK, CK 30S RIBOSOMAL PROTEIN S11 300852  
118 4V5S 11 AK, CK 30S RIBOSOMAL PROTEIN S11 300852  
119 4V9I 11 AK, CK 30S Ribosomal protein S11 300852  
120 1XMO 13 K 30S ribosomal protein S11 274  
121 3T1H 11 K 30S ribosomal protein S11 300852  
122 2UXD 11 K RIBOSOMAL PROTEIN S11 300852  
123 1N33 13 K 30S RIBOSOMAL PROTEIN S11 274  
124 1IBK 12 K 30S RIBOSOMAL PROTEIN S11 274  
125 4V6G 11 AN, CN 30S RIBOSOMAL PROTEIN S11 300852  
126 4V8N 11 AK, CK 30S RIBOSOMAL PROTEIN S11 300852  
127 4V97 11 AK, CK 30S ribosomal protein S11 300852  
128 1HNW 12 K 30S RIBOSOMAL PROTEIN S11 274  
129 4V7M 11 AK, CK 30S ribosomal protein S11 300852  
130 1IBM 14 K 30S RIBOSOMAL PROTEIN S11 274  
131 4V6A 11 AK, CK 30S ribosomal protein S11 300852  
132 4V84 11 AK, CK 30S ribosomal protein S11 262724  
133 4V7K 10 Ak, Bk 30S ribosomal protein S11 300852  
134 1HNX 12 K 30S RIBOSOMAL PROTEIN S11 274  
135 4V9Q 41 BK, DK 30S ribosomal protein S11 262724  
136 4V9N 14 AK, CK 30S ribosomal protein S11 262724  
137 4P70 11 QK, XK 30S ribosomal protein S11 300852  
138 4V8U 11 AK, CK 30S RIBOSOMAL PROTEIN S11 300852  
139 4LSK 11 QK, XK 30S ribosomal protein S11 300852  
140 4P6F 11 QK, XK 30S ribosomal protein S11 300852  
141 4V67 13 AK, CK 30S ribosomal protein S11 274  
142 4V83 11 AK, CK 30S ribosomal protein S11 262724  
143 4V5F 11 AK, CK 30S RIBOSOMAL PROTEIN S11 300852  
144 1VVJ 11 QK, XK 30S ribosomal protein S11 300852  
145 4LFZ 11 QK, XK 30S ribosomal protein S11 300852  
146 2E5L 12 K 30S ribosomal protein S11 274  
147 2HHH 11 K 30S ribosomal protein S11 300852  
148 4OX9 11 K 30S ribosomal protein S11 300852  
149 2UXB 11 K RIBOSOMAL PROTEIN S11 300852  
150 1I96 11 K 30S RIBOSOMAL PROTEIN S11 274  
151 4V9K 10 AK, CK 30S ribosomal protein S11 262724  
152 1N34 12 K 30S RIBOSOMAL PROTEIN S11 274  
153 4V5A 11 AK, CK 30S RIBOSOMAL PROTEIN S11 300852  
154 4V63 13 AK, CK 30S ribosomal protein S11 262724  
155 4L71 11 QK, XK 30S ribosomal protein S11 300852  
156 4KVB 11 K 30S ribosomal protein S11 262724  
157 4V7P 11 AK, DK 30S ribosomal protein S11 262724  
158 4V8J 11 AK, CK 30S ribosomal protein S11 300852  
159 1N36 11 K 30S RIBOSOMAL PROTEIN S11 274  
160 2ZM6 11 K 30S ribosomal protein S11 274  
161 4LEL 11 QK, XK 30S ribosomal protein S11 300852  
162 2F4V 12 K 30S ribosomal protein S11 274  
163 4V9L 10 AK, CK 30S ribosomal protein S11 262724  
164 4V5G 11 AK, CK 30S RIBOSOMAL PROTEIN S11 300852  
165 1I97 11 K 30S RIBOSOMAL PROTEIN S11 274  
166 4V9J 10 AK, CK 30S ribosomal protein S11 262724  
167 1I95 11 K 30S RIBOSOMAL PROTEIN S11 274  
168 4V8O 11 AK 30S RIBOSOMAL PROTEIN S11 300852  
169 4V9M 10 AK, CK 30S ribosomal protein S11 262724  
170 4W29 10 AK, CK 30S ribosomal protein S11 262724  
171 4V4Y 13 AN 30S ribosomal protein S11 300852  
172 4V4J 44 l 30S ribosomal protein S11 262724  
173 4V4X 13 AN 30S ribosomal protein S11 300852  
174 4V4Z 14 AN 30S ribosomal protein S11 300852  
175 4V4I 44 l 30S ribosomal protein S11 262724  
176 4V4P 46 BN 30S ribosomal protein S11 300852  
177 4V4R 14 AK 30S ribosomal protein S11 300852  
178 4V4S 14 AK 30S ribosomal protein S11 300852  
179 4V4T 14 AK 30S ribosomal protein S11 300852  
180 4V49 13 AK 30S ribosomal protein S11 562  
181 4V4A 11 AK 30S ribosomal protein S11 562  
182 4V4G 11 AK, CK, EK, GK, IK 30S ribosomal protein S11 562  
183 4V5N 11 AK 30S RIBOSOMAL PROTEIN S11 300852  
184 4V5M 11 AK 30S RIBOSOMAL PROTEIN S11 300852  
185 4V68 7 AK 30S ribosomal protein S11 274  
186 1X18 7 G 30S ribosomal protein S11 274  
187 1ML5 16 N 30S RIBOSOMAL PROTEIN S11 562  
188 1JGO 14 N 30S RIBOSOMAL PROTEIN S11 274  
189 1JGP 14 N 30S RIBOSOMAL PROTEIN S11 274  
190 1JGQ 14 N 30S RIBOSOMAL PROTEIN S11 274  
191 4V42 14 AN 30S RIBOSOMAL PROTEIN S11 274  
 
Sequence Clusters for the Sequence Entities in PDB 4JI8
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 189 28
95% 29 190 47
90% 29 190 50
70% 29 190 60
50% 39 271 34
40% 39 271 46
30% 39 276 66
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 191 26
95% 29 191 43
90% 29 191 45
70% 29 191 56
50% 33 265 41
40% 40 318 35
30% 40 318 45
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 17556
95% 29 198 34
90% 29 198 36
70% 33 277 24
50% 33 277 33
40% 33 277 45
30% 33 277 69
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 192 23
95% 29 192 40
90% 29 192 43
70% 29 192 54
50% 33 270 38
40% 33 270 51
30% 38 319 49
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 190 27
95% 29 190 48
90% 29 190 51
70% 29 190 61
50% 29 190 94
40% 29 190 119
30% 29 190 142
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 194 21
95% 31 199 33
90% 31 199 35
70% 31 199 47
50% 38 278 32
40% 38 278 43
30% 38 278 67
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 186 29
95% 29 191 45
90% 29 191 48
70% 29 191 58
50% 29 191 92
40% 29 191 117
30% 33 268 78
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 21 106 56
95% 29 185 49
90% 29 189 52
70% 29 189 62
50% 29 189 95
40% 29 189 120
30% 29 189 143
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 119 50
95% 26 168 61
90% 26 168 64
70% 26 168 80
50% 26 168 117
40% 26 168 140
30% 26 168 163
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 170 37
95% 27 170 59
90% 27 170 63
70% 27 170 78
50% 34 268 37
40% 34 268 50
30% 34 268 74
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 191 24
95% 29 192 37
90% 29 192 41
70% 29 192 52
50% 29 192 91
40% 33 265 54
30% 33 265 77
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 142 42
95% 29 190 46
90% 29 190 49
70% 29 190 59
50% 29 190 93
40% 29 190 118
30% 29 190 141
Entity #21: Chains: U - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 181 34
95% 29 181 53
90% 29 181 55
70% 29 181 69
50% 29 181 105
40% 29 181 132
30% 29 181 151
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 26 167 38
95% 26 167 63
90% 26 167 66
70% 26 167 82
50% 27 206 77
40% 27 206 101
30% 27 206 122
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 184 30
95% 29 192 38
90% 29 192 42
70% 29 192 53
50% 33 265 39
40% 33 266 52
30% 33 266 76
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 191 25
95% 29 191 42
90% 29 191 44
70% 29 191 55
50% 34 269 36
40% 34 269 49
30% 34 271 73
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 196 19
95% 36 202 30
90% 36 202 31
70% 36 202 45
50% 36 202 84
40% 36 202 108
30% 41 239 93
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 195 20
95% 30 196 36
90% 30 196 38
70% 30 196 49
50% 34 237 56
40% 34 238 74
30% 34 238 96
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 191 22
95% 30 191 39
90% 30 195 39
70% 30 195 50
50% 36 271 35
40% 37 273 47
30% 43 323 44
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 102 77
95% 29 191 44
90% 29 191 46
70% 29 191 57
50% 33 265 40
40% 33 265 55
30% 38 314 52
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.