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Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Sequence Clustering and Redundancy Reduction Results
4JI8
Cluster # 47 Members. Sequence cutoff: 90% Cluster size: 198 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4Y4O 41 1j, 2j 30S ribosomal protein S10 300852  
2 4W2F 10 AJ, CJ 30S Ribosomal Protein S10 300852  
3 4Y4P 41 1j, 2j 30S ribosomal protein S10 300852  
4 4W2G 10 AJ, CJ 30S Ribosomal Protein S10 300852  
5 4LFB 10 J ribosomal protein S10 300852  
6 1VY4 10 AJ, CJ 30S ribosomal protein S10 300852  
7 4W2I 10 AJ, CJ 30S Ribosomal Protein S10 300852  
8 1VY5 10 AJ, CJ 30S ribosomal protein S10 300852  
9 4WQF 43 BJ, DJ 30S ribosomal protein S10 300852  
10 4W2H 10 AJ, CJ 30S Ribosomal Protein S10 300852  
11 4WPO 43 BJ, DJ 30S ribosomal protein S10 300852  
12 4V8I 10 AJ, CJ 30S Ribosomal Protein S10 274  
13 4JI1 10 J RIBOSOMAL PROTEIN S10 300852  
14 4DR6 10 J 30S ribosomal protein S10 300852  
15 4LF7 10 J ribosomal protein S10 300852  
16 4LF8 10 J ribosomal protein S10 300852  
17 4WQU 43 BJ, DJ 30S ribosomal protein S10 300852  
18 2VQE 10 J 30S RIBOSOMAL PROTEIN S10 300852  
19 2UUB 10 J 30S RIBOSOMAL PROTEIN S10 300852  
20 4DV6 10 J ribosomal protein S10 300852  
21 4JYA 10 J 30S ribosomal protein S10 300852  
22 4DR5 10 J 30S ribosomal protein S10 300852  
23 4KHP 10 J 30S Ribosomal protein S10 300852  
24 4DR2 10 J 30S ribosomal protein S10 300852  
25 4LF9 10 J ribosomal protein S10 300852  
26 4WQY 43 BJ, DJ 30S ribosomal protein S10 300852  
27 4DUY 10 J ribosomal protein S10 300852  
28 4DV7 10 J ribosomal protein S10 300852  
29 4V9H 4 AJ 30S ribosomal protein S10 300852  
30 4V8D 10 AM, CM 30S RIBOSOMAL PROTEIN S10 300852  
31 4DR3 10 J 30S ribosomal protein S10 300852  
32 4V90 10 AJ 30S RIBOSOMAL PROTEIN S10 300852  
33 4JI3 10 J RIBOSOMAL PROTEIN S10 300852  
34 4JI6 10 J RIBOSOMAL PROTEIN S10 300852  
35 4JI8 10 J RIBOSOMAL PROTEIN S10 300852  
36 2UXC 10 J RIBOSOMAL PROTEIN S10 300852  
37 4V9R 10 AJ, CJ 30S Ribosomal Protein S10 274  
38 4B3M 10 J 30S RIBOSOMAL PROTEIN S10 300852  
39 4LF4 10 J ribosomal protein S10 300852  
40 4LF6 10 J ribosomal protein S10 300852  
41 4JI7 10 J RIBOSOMAL PROTEIN S10 300852  
42 4B3T 10 J 30S RIBOSOMAL PROTEIN S10 300852  
43 4V8B 10 AM, CM 30S RIBOSOMAL PROTEIN S10 300852  
44 2VQF 10 J 30S RIBOSOMAL PROTEIN S10 300852  
45 2UUA 10 J 30S RIBOSOMAL PROTEIN S10 300852  
46 4V87 40 BM, CM 30S RIBOSOMAL PROTEIN S10 300852  
47 4V95 10 AJ, CJ 30S Ribosomal Protein S10 274  
48 1VY7 10 AJ, CJ 30S ribosomal protein S10 300852  
49 4B3R 10 J 30S RIBOSOMAL PROTEIN S10 300852  
50 4LNT 10 QJ, XJ 30S ribosomal protein S10 300852  
51 4DR1 10 J 30S ribosomal protein S10 300852  
52 4LFA 10 J ribosomal protein S10 300852  
53 4DV4 10 J ribosomal protein S10 300852  
54 4JI0 10 J ribosomal protein S10 300852  
55 4V9S 10 AJ, CJ 30S Ribosomal Protein S10 274  
56 4JI2 10 J RIBOSOMAL PROTEIN S10 300852  
57 4JV5 10 J 30S ribosomal protein S10 300852  
58 4DR7 10 J 30S ribosomal protein S10 300852  
59 1J5E 10 J 30S RIBOSOMAL PROTEIN S10 274  
60 4GKK 10 J 30S ribosomal protein S10 300852  
61 4DUZ 10 J ribosomal protein S10 300852  
62 4V8G 10 AJ, CJ 30S Ribosomal Protein S10 300852  
63 4GKJ 10 J 30S ribosomal protein S10 300852  
64 4DV3 10 J ribosomal protein S10 300852  
65 4DV5 10 J ribosomal protein S10 300852  
66 2UUC 10 J 30S RIBOSOMAL PROTEIN S10 300852  
67 4LFC 10 J ribosomal protein S10 300852  
68 1FJG 11 J 30S RIBOSOMAL PROTEIN S10 274  
69 3T1Y 10 J 30S ribosomal protein S10 300852  
70 4JI4 10 J RIBOSOMAL PROTEIN S10 300852  
71 1VY6 10 AJ, CJ 30S ribosomal protein S10 300852  
72 1XMQ 12 J 30S Ribosomal Protein S10 274  
73 4DV0 10 J ribosomal protein S10 300852  
74 4V9B 10 AM, CM 30S RIBOSOMAL PROTEIN S10 300852  
75 4V6F 40 BM, CM 30S ribosomal protein S10 300852  
76 4V8F 40 BM, CM 30S RIBOSOMAL PROTEIN S10 300852  
77 4B3S 10 J 30S RIBOSOMAL PROTEIN S10 300852  
78 4DV2 10 J ribosomal protein S10 300852  
79 4DV1 10 J ribosomal protein S10 300852  
80 1N32 12 J 30S RIBOSOMAL PROTEIN S10 274  
81 1I94 10 J 30S RIBOSOMAL PROTEIN S10 274  
82 4V8H 10 AJ, CJ 30S Ribosomal Protein S10 300852  
83 4JI5 10 J RIBOSOMAL PROTEIN S10 300852  
84 4K0K 10 J 30S ribosomal protein S10 300852  
85 4W2E 43 j 30S ribosomal protein S10 300852  
86 4V8C 40 CM, DM 30S RIBOSOMAL PROTEIN S10 300852  
87 4LF5 10 J ribosomal protein S10 300852  
88 4V9A 10 AM, CM 30S RIBOSOMAL PROTEIN S10 300852  
89 4V5J 10 AJ, CJ 30S RIBOSOMAL PROTEIN S10 300852  
90 4V7Y 10 AJ, CJ 30S ribosomal protein S10 300852  
91 4V8E 40 BM, DM 30S RIBOSOMAL PROTEIN S10 300852  
92 4DR4 10 J 30S ribosomal protein S10 300852  
93 3OTO 10 J 30S RIBOSOMAL PROTEIN S10 300852  
94 2UU9 10 J 30S RIBOSOMAL PROTEIN S10 300852  
95 4V8Q 44 BJ 30S RIBOSOMAL PROTEIN S10 300852  
96 1HR0 11 J 30S RIBOSOMAL PROTEIN S10 274  
97 4AQY 10 J 30S RIBOSOMAL PROTEIN S10 274  
98 4NXM 10 J ribosomal protein S10 300852  
99 4V5L 10 AJ 30S RIBOSOMAL PROTEIN S10 300852  
100 4V7X 10 AJ, CJ 30S ribosomal protein S10 300852  
101 1IBL 13 J 30S RIBOSOMAL PROTEIN S10 274  
102 4V7W 10 AJ, CJ 30S ribosomal protein S10 300852  
103 4WUS 11 J 30S ribosomal protein S10 300852  
104 4WT8 10 J 30S ribosomal protein S10 300852  
105 4NXN 10 J ribosomal protein S10 300852  
106 1XNR 12 J 16S Ribosomal protein S10 274  
107 4LT8 10 QJ, XJ 30S ribosomal protein S10 300852  
108 4V51 10 AJ, CJ 30S RIBOSOMAL PROTEIN S10 300852  
109 4V7L 10 AJ, CJ 30S ribosomal protein S10 300852  
110 4V5R 10 AJ, CJ 30S RIBOSOMAL PROTEIN S10 300852  
111 1HNZ 11 J 30S RIBOSOMAL PROTEIN S10 274  
112 1XNQ 12 J Ribosomal protein S10 274  
113 4V8A 40 CJ, DJ 30S ribosomal protein S10 300852  
114 4V5K 10 AJ, CJ 30S RIBOSOMAL PROTEIN S10 300852  
115 4V5Q 10 AJ, CJ 30S RIBOSOMAL PROTEIN S10 300852  
116 4V7J 9 Aj, Bj 30S ribosomal protein S10 300852  
117 4V5C 10 AJ, CJ 30S RIBOSOMAL PROTEIN S10 300852  
118 4V5E 10 AJ, CJ 30S RIBOSOMAL PROTEIN S10 300852  
119 4L47 10 QJ, XJ 30S ribosomal protein S10 300852  
120 4V5P 10 AJ, CJ 30S RIBOSOMAL PROTEIN S10 300852  
121 4V5D 10 AJ, CJ 30S RIBOSOMAL PROTEIN S10 300852  
122 4V7Z 10 AJ, CJ 30S ribosomal protein S10 300852  
123 4V8X 10 AJ, CJ 30S RIBOSOMAL PROTEIN S10 300852  
124 4V5S 10 AJ, CJ 30S RIBOSOMAL PROTEIN S10 300852  
125 4V9I 10 AJ, CJ 30S Ribosomal protein S10 300852  
126 1XMO 12 J 30S ribosomal protein S10 274  
127 3T1H 10 J 30S ribosomal protein S10 300852  
128 2UXD 10 J RIBOSOMAL PROTEIN S10 300852  
129 1N33 12 J 30S RIBOSOMAL PROTEIN S10 274  
130 1IBK 11 J 30S RIBOSOMAL PROTEIN S10 274  
131 4V6G 10 AM, CM 30S RIBOSOMAL PROTEIN S10 300852  
132 4V8N 10 AJ, CJ 30S RIBOSOMAL PROTEIN S10 300852  
133 4V97 10 AJ, CJ 30S ribosomal protein S10 300852  
134 1HNW 11 J 30S RIBOSOMAL PROTEIN S10 274  
135 4V7M 10 AJ, CJ 30S ribosomal protein S10 300852  
136 1IBM 13 J 30S RIBOSOMAL PROTEIN S10 274  
137 4V6A 10 AJ, CJ 30S ribosomal protein S10 300852  
138 4V84 10 AJ, CJ 30S ribosomal protein S10 262724  
139 4V7K 9 Aj, Bj 30S ribosomal protein S10 300852  
140 1HNX 11 J 30S RIBOSOMAL PROTEIN S10 274  
141 4V9Q 40 BJ, DJ 30S ribosomal protein S10 262724  
142 4YHH 10 J 30S ribosomal protein S10 262724  
143 4V9N 13 AJ, CJ 30S ribosomal protein S10 262724  
144 4P70 10 QJ, XJ 30S ribosomal protein S10 300852  
145 4V8U 10 AJ, CJ 30S RIBOSOMAL PROTEIN S10 300852  
146 4LSK 10 QJ, XJ 30S ribosomal protein S10 300852  
147 4P6F 10 QJ, XJ 30S ribosomal protein S10 300852  
148 4V67 12 AJ, CJ 30S ribosomal protein S10 274  
149 4V83 10 AJ, CJ 30S ribosomal protein S10 262724  
150 4V5F 10 AJ, CJ 30S RIBOSOMAL PROTEIN S10 300852  
151 1VVJ 10 QJ, XJ 30S ribosomal protein S10 300852  
152 4LFZ 10 QJ, XJ 30S ribosomal protein S10 300852  
153 2E5L 11 J 30S ribosomal protein S10 274  
154 2HHH 10 J 30S ribosomal protein S10 300852  
155 4OX9 10 J 30S ribosomal protein S10 300852  
156 2UXB 10 J RIBOSOMAL PROTEIN S10 300852  
157 1I96 10 J 30S RIBOSOMAL PROTEIN S10 274  
158 4V9K 9 AJ, CJ 30S ribosomal protein S10 262724  
159 1N34 11 J 30S RIBOSOMAL PROTEIN S10 274  
160 4V5A 10 AJ, CJ 30S RIBOSOMAL PROTEIN S10 300852  
161 4V63 12 AJ, CJ 30S ribosomal protein S10 262724  
162 4L71 10 QJ, XJ 30S ribosomal protein S10 300852  
163 4KVB 10 J 30S ribosomal protein S10 262724  
164 4XEJ 37 AS10, BS10 30S ribosomal protein S10 262724  
165 4V7P 10 AJ, DJ 30S ribosomal protein S10 262724  
166 4V8J 10 AJ, CJ 30S ribosomal protein S10 300852  
167 1N36 10 J 30S RIBOSOMAL PROTEIN S10 274  
168 2ZM6 10 J 30S ribosomal protein S10 274  
169 4LEL 10 QJ, XJ 30S ribosomal protein S10 300852  
170 2F4V 11 J 30S ribosomal protein S10 274  
171 4V9L 9 AJ, CJ 30S ribosomal protein S10 262724  
172 4V5G 10 AJ, CJ 30S RIBOSOMAL PROTEIN S10 300852  
173 1I97 10 J 30S RIBOSOMAL PROTEIN S10 274  
174 4V9J 9 AJ, CJ 30S ribosomal protein S10 262724  
175 1I95 10 J 30S RIBOSOMAL PROTEIN S10 274  
176 4V8O 10 AJ 30S RIBOSOMAL PROTEIN S10 300852  
177 4V9M 9 AJ, CJ 30S ribosomal protein S10 262724  
178 4W29 9 AJ, CJ 30S ribosomal protein S10 262724  
179 4V4Y 12 AM 30S ribosomal protein S10 300852  
180 4V4J 43 k 30S ribosomal protein S10 262724  
181 4V4X 12 AM 30S ribosomal protein S10 300852  
182 4V4Z 13 AM 30S ribosomal protein S10 300852  
183 4V4I 43 k 30S ribosomal protein S10 262724  
184 4V4P 45 BM 30S ribosomal protein S10 300852  
185 4V4R 13 AJ 30S ribosomal protein S10 300852  
186 4V4S 13 AJ 30S ribosomal protein S10 300852  
187 4V4T 13 AJ 30S ribosomal protein S10 300852  
188 4V49 12 AJ 30S ribosomal protein S10 562  
189 4V4A 10 AJ 30S ribosomal protein S10 562  
190 4V4G 10 AJ, CJ, EJ, GJ, IJ 30S ribosomal protein S10 562  
191 4V5N 10 AJ 30S RIBOSOMAL PROTEIN S10 300852  
192 4V5M 10 AJ 30S RIBOSOMAL PROTEIN S10 300852  
193 4V68 17 AJ 30S ribosomal protein S10 274  
194 1ML5 15 M 30S RIBOSOMAL PROTEIN S10 562  
195 1JGO 13 M 30S RIBOSOMAL PROTEIN S10 274  
196 1JGP 13 M 30S RIBOSOMAL PROTEIN S10 274  
197 1JGQ 13 M 30S RIBOSOMAL PROTEIN S10 274  
198 4V42 13 AM 30S RIBOSOMAL PROTEIN S10 274  
 
Sequence Clusters for the Sequence Entities in PDB 4JI8
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 197 29
95% 35 198 45
90% 35 198 47
70% 35 198 59
50% 46 282 35
40% 46 282 45
30% 51 333 45
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 199 25
95% 35 199 40
90% 35 199 42
70% 35 199 54
50% 40 276 42
40% 47 332 35
30% 47 332 46
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 17961
95% 35 206 31
90% 35 206 33
70% 40 288 24
50% 40 288 34
40% 40 288 44
30% 40 288 69
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 200 22
95% 35 200 38
90% 35 200 40
70% 35 200 51
50% 40 281 39
40% 40 281 50
30% 45 333 49
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 198 26
95% 35 198 46
90% 35 198 48
70% 35 198 60
50% 35 198 92
40% 35 198 114
30% 35 198 137
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 202 20
95% 37 207 30
90% 37 207 32
70% 37 207 43
50% 45 289 33
40% 45 289 43
30% 45 289 67
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 194 30
95% 35 199 42
90% 35 199 44
70% 35 199 56
50% 35 199 89
40% 35 199 112
30% 40 279 76
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 113 66
95% 35 193 50
90% 35 197 49
70% 35 197 61
50% 35 197 93
40% 35 197 116
30% 35 197 138
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 125 59
95% 32 174 71
90% 32 174 75
70% 32 174 88
50% 32 174 128
40% 32 174 146
30% 32 174 164
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 202 19
95% 36 202 33
90% 36 202 36
70% 36 202 47
50% 41 279 38
40% 41 279 49
30% 41 279 73
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 199 23
95% 35 200 35
90% 35 200 38
70% 35 200 48
50% 35 200 88
40% 40 276 53
30% 40 276 75
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 149 54
95% 35 198 44
90% 35 198 46
70% 35 198 58
50% 35 198 91
40% 35 198 113
30% 35 198 136
Entity #21: Chains: U - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 189 32
95% 35 189 52
90% 35 189 55
70% 35 189 67
50% 35 189 111
40% 35 189 134
30% 35 189 153
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 173 48
95% 32 173 72
90% 32 173 76
70% 32 173 90
50% 33 214 76
40% 33 214 102
30% 33 214 122
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 192 31
95% 35 200 36
90% 35 200 39
70% 35 200 49
50% 40 276 40
40% 40 277 51
30% 40 277 74
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 199 24
95% 35 199 39
90% 35 199 41
70% 35 199 52
50% 41 280 37
40% 41 280 48
30% 41 282 72
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 204 17
95% 42 210 29
90% 42 210 31
70% 42 210 42
50% 42 210 82
40% 42 210 107
30% 48 248 87
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 203 18
95% 36 204 32
90% 36 204 34
70% 36 204 44
50% 41 246 53
40% 41 247 70
30% 41 247 94
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 199 21
95% 36 199 37
90% 36 203 35
70% 36 203 45
50% 43 282 36
40% 44 284 46
30% 50 337 44
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 109 86
95% 35 199 41
90% 35 199 43
70% 35 199 55
50% 40 276 41
40% 40 276 54
30% 45 328 50
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.