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Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Sequence Clustering and Redundancy Reduction Results
4JI8
Cluster # 28 Members. Sequence cutoff: 100% Cluster size: 194 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4W2F 10 AJ, CJ 30S Ribosomal Protein S10 300852  
2 4W2G 10 AJ, CJ 30S Ribosomal Protein S10 300852  
3 4LFB 10 J ribosomal protein S10 300852  
4 1VY4 10 AJ, CJ 30S ribosomal protein S10 300852  
5 4W2I 10 AJ, CJ 30S Ribosomal Protein S10 300852  
6 1VY5 10 AJ, CJ 30S ribosomal protein S10 300852  
7 4WQF 43 BJ, DJ 30S ribosomal protein S10 300852  
8 4W2H 10 AJ, CJ 30S Ribosomal Protein S10 300852  
9 4WPO 43 BJ, DJ 30S ribosomal protein S10 300852  
10 4V8I 10 AJ, CJ 30S Ribosomal Protein S10 274  
11 4JI1 10 J RIBOSOMAL PROTEIN S10 300852  
12 4DR6 10 J 30S ribosomal protein S10 300852  
13 4LF7 10 J ribosomal protein S10 300852  
14 4LF8 10 J ribosomal protein S10 300852  
15 4WQU 43 BJ, DJ 30S ribosomal protein S10 300852  
16 2VQE 10 J 30S RIBOSOMAL PROTEIN S10 300852  
17 2UUB 10 J 30S RIBOSOMAL PROTEIN S10 300852  
18 4DV6 10 J ribosomal protein S10 300852  
19 4JYA 10 J 30S ribosomal protein S10 300852  
20 4DR5 10 J 30S ribosomal protein S10 300852  
21 4KHP 10 J 30S Ribosomal protein S10 300852  
22 4DR2 10 J 30S ribosomal protein S10 300852  
23 4LF9 10 J ribosomal protein S10 300852  
24 4WQY 43 BJ, DJ 30S ribosomal protein S10 300852  
25 4DUY 10 J ribosomal protein S10 300852  
26 4DV7 10 J ribosomal protein S10 300852  
27 4V9H 4 AJ 30S ribosomal protein S10 300852  
28 4V8D 10 AM, CM 30S RIBOSOMAL PROTEIN S10 300852  
29 4DR3 10 J 30S ribosomal protein S10 300852  
30 4V90 10 AJ 30S RIBOSOMAL PROTEIN S10 300852  
31 4JI3 10 J RIBOSOMAL PROTEIN S10 300852  
32 4JI6 10 J RIBOSOMAL PROTEIN S10 300852  
33 4JI8 10 J RIBOSOMAL PROTEIN S10 300852  
34 2UXC 10 J RIBOSOMAL PROTEIN S10 300852  
35 4V9R 10 AJ, CJ 30S Ribosomal Protein S10 274  
36 4B3M 10 J 30S RIBOSOMAL PROTEIN S10 300852  
37 4LF4 10 J ribosomal protein S10 300852  
38 4LF6 10 J ribosomal protein S10 300852  
39 4JI7 10 J RIBOSOMAL PROTEIN S10 300852  
40 4B3T 10 J 30S RIBOSOMAL PROTEIN S10 300852  
41 4V8B 10 AM, CM 30S RIBOSOMAL PROTEIN S10 300852  
42 2VQF 10 J 30S RIBOSOMAL PROTEIN S10 300852  
43 2UUA 10 J 30S RIBOSOMAL PROTEIN S10 300852  
44 4V87 40 BM, CM 30S RIBOSOMAL PROTEIN S10 300852  
45 4V95 10 AJ, CJ 30S Ribosomal Protein S10 274  
46 1VY7 10 AJ, CJ 30S ribosomal protein S10 300852  
47 4B3R 10 J 30S RIBOSOMAL PROTEIN S10 300852  
48 4LNT 10 QJ, XJ 30S ribosomal protein S10 300852  
49 4DR1 10 J 30S ribosomal protein S10 300852  
50 4LFA 10 J ribosomal protein S10 300852  
51 4DV4 10 J ribosomal protein S10 300852  
52 4JI0 10 J ribosomal protein S10 300852  
53 4V9S 10 AJ, CJ 30S Ribosomal Protein S10 274  
54 4JI2 10 J RIBOSOMAL PROTEIN S10 300852  
55 4JV5 10 J 30S ribosomal protein S10 300852  
56 4DR7 10 J 30S ribosomal protein S10 300852  
57 1J5E 10 J 30S RIBOSOMAL PROTEIN S10 274  
58 4GKK 10 J 30S ribosomal protein S10 300852  
59 4DUZ 10 J ribosomal protein S10 300852  
60 4V8G 10 AJ, CJ 30S Ribosomal Protein S10 300852  
61 4GKJ 10 J 30S ribosomal protein S10 300852  
62 4DV3 10 J ribosomal protein S10 300852  
63 4DV5 10 J ribosomal protein S10 300852  
64 2UUC 10 J 30S RIBOSOMAL PROTEIN S10 300852  
65 4LFC 10 J ribosomal protein S10 300852  
66 1FJG 11 J 30S RIBOSOMAL PROTEIN S10 274  
67 3T1Y 10 J 30S ribosomal protein S10 300852  
68 4JI4 10 J RIBOSOMAL PROTEIN S10 300852  
69 1VY6 10 AJ, CJ 30S ribosomal protein S10 300852  
70 1XMQ 12 J 30S Ribosomal Protein S10 274  
71 4DV0 10 J ribosomal protein S10 300852  
72 4V9B 10 AM, CM 30S RIBOSOMAL PROTEIN S10 300852  
73 4V6F 40 BM, CM 30S ribosomal protein S10 300852  
74 4V8F 40 BM, CM 30S RIBOSOMAL PROTEIN S10 300852  
75 4B3S 10 J 30S RIBOSOMAL PROTEIN S10 300852  
76 4DV2 10 J ribosomal protein S10 300852  
77 4DV1 10 J ribosomal protein S10 300852  
78 1N32 12 J 30S RIBOSOMAL PROTEIN S10 274  
79 1I94 10 J 30S RIBOSOMAL PROTEIN S10 274  
80 4V8H 10 AJ, CJ 30S Ribosomal Protein S10 300852  
81 4JI5 10 J RIBOSOMAL PROTEIN S10 300852  
82 4K0K 10 J 30S ribosomal protein S10 300852  
83 4W2E 43 j 30S ribosomal protein S10 300852  
84 4V8C 40 CM, DM 30S RIBOSOMAL PROTEIN S10 300852  
85 4LF5 10 J ribosomal protein S10 300852  
86 4V9A 10 AM, CM 30S RIBOSOMAL PROTEIN S10 300852  
87 4V5J 10 AJ, CJ 30S RIBOSOMAL PROTEIN S10 300852  
88 4V7Y 10 AJ, CJ 30S ribosomal protein S10 300852  
89 4V8E 40 BM, DM 30S RIBOSOMAL PROTEIN S10 300852  
90 4DR4 10 J 30S ribosomal protein S10 300852  
91 3OTO 10 J 30S RIBOSOMAL PROTEIN S10 300852  
92 2UU9 10 J 30S RIBOSOMAL PROTEIN S10 300852  
93 4V8Q 44 BJ 30S RIBOSOMAL PROTEIN S10 300852  
94 1HR0 11 J 30S RIBOSOMAL PROTEIN S10 274  
95 4AQY 10 J 30S RIBOSOMAL PROTEIN S10 274  
96 4NXM 10 J ribosomal protein S10 300852  
97 4V5L 10 AJ 30S RIBOSOMAL PROTEIN S10 300852  
98 4V7X 10 AJ, CJ 30S ribosomal protein S10 300852  
99 1IBL 13 J 30S RIBOSOMAL PROTEIN S10 274  
100 4V7W 10 AJ, CJ 30S ribosomal protein S10 300852  
101 4WUS 11 J 30S ribosomal protein S10 300852  
102 4WT8 10 J 30S ribosomal protein S10 300852  
103 4NXN 10 J ribosomal protein S10 300852  
104 1XNR 12 J 16S Ribosomal protein S10 274  
105 4LT8 10 QJ, XJ 30S ribosomal protein S10 300852  
106 4V51 10 AJ, CJ 30S RIBOSOMAL PROTEIN S10 300852  
107 4V7L 10 AJ, CJ 30S ribosomal protein S10 300852  
108 4V5R 10 AJ, CJ 30S RIBOSOMAL PROTEIN S10 300852  
109 1HNZ 11 J 30S RIBOSOMAL PROTEIN S10 274  
110 1XNQ 12 J Ribosomal protein S10 274  
111 4V5K 10 AJ, CJ 30S RIBOSOMAL PROTEIN S10 300852  
112 4V5Q 10 AJ, CJ 30S RIBOSOMAL PROTEIN S10 300852  
113 4V7J 9 Aj, Bj 30S ribosomal protein S10 300852  
114 4V5C 10 AJ, CJ 30S RIBOSOMAL PROTEIN S10 300852  
115 4V5E 10 AJ, CJ 30S RIBOSOMAL PROTEIN S10 300852  
116 4L47 10 QJ, XJ 30S ribosomal protein S10 300852  
117 4V5P 10 AJ, CJ 30S RIBOSOMAL PROTEIN S10 300852  
118 4V5D 10 AJ, CJ 30S RIBOSOMAL PROTEIN S10 300852  
119 4V7Z 10 AJ, CJ 30S ribosomal protein S10 300852  
120 4V8X 10 AJ, CJ 30S RIBOSOMAL PROTEIN S10 300852  
121 4V5S 10 AJ, CJ 30S RIBOSOMAL PROTEIN S10 300852  
122 4V9I 10 AJ, CJ 30S Ribosomal protein S10 300852  
123 1XMO 12 J 30S ribosomal protein S10 274  
124 3T1H 10 J 30S ribosomal protein S10 300852  
125 2UXD 10 J RIBOSOMAL PROTEIN S10 300852  
126 1N33 12 J 30S RIBOSOMAL PROTEIN S10 274  
127 1IBK 11 J 30S RIBOSOMAL PROTEIN S10 274  
128 4V6G 10 AM, CM 30S RIBOSOMAL PROTEIN S10 300852  
129 4V8N 10 AJ, CJ 30S RIBOSOMAL PROTEIN S10 300852  
130 4V97 10 AJ, CJ 30S ribosomal protein S10 300852  
131 1HNW 11 J 30S RIBOSOMAL PROTEIN S10 274  
132 4V7M 10 AJ, CJ 30S ribosomal protein S10 300852  
133 1IBM 13 J 30S RIBOSOMAL PROTEIN S10 274  
134 4V6A 10 AJ, CJ 30S ribosomal protein S10 300852  
135 4V84 10 AJ, CJ 30S ribosomal protein S10 262724  
136 4V7K 9 Aj, Bj 30S ribosomal protein S10 300852  
137 1HNX 11 J 30S RIBOSOMAL PROTEIN S10 274  
138 4V9Q 40 BJ, DJ 30S ribosomal protein S10 262724  
139 4V9N 13 AJ, CJ 30S ribosomal protein S10 262724  
140 4P70 10 QJ, XJ 30S ribosomal protein S10 300852  
141 4V8U 10 AJ, CJ 30S RIBOSOMAL PROTEIN S10 300852  
142 4LSK 10 QJ, XJ 30S ribosomal protein S10 300852  
143 4P6F 10 QJ, XJ 30S ribosomal protein S10 300852  
144 4V67 12 AJ, CJ 30S ribosomal protein S10 274  
145 4V83 10 AJ, CJ 30S ribosomal protein S10 262724  
146 4V5F 10 AJ, CJ 30S RIBOSOMAL PROTEIN S10 300852  
147 1VVJ 10 QJ, XJ 30S ribosomal protein S10 300852  
148 4LFZ 10 QJ, XJ 30S ribosomal protein S10 300852  
149 2E5L 11 J 30S ribosomal protein S10 274  
150 2HHH 10 J 30S ribosomal protein S10 300852  
151 4OX9 10 J 30S ribosomal protein S10 300852  
152 2UXB 10 J RIBOSOMAL PROTEIN S10 300852  
153 1I96 10 J 30S RIBOSOMAL PROTEIN S10 274  
154 4V9K 9 AJ, CJ 30S ribosomal protein S10 262724  
155 1N34 11 J 30S RIBOSOMAL PROTEIN S10 274  
156 4V5A 10 AJ, CJ 30S RIBOSOMAL PROTEIN S10 300852  
157 4V63 12 AJ, CJ 30S ribosomal protein S10 262724  
158 4L71 10 QJ, XJ 30S ribosomal protein S10 300852  
159 4KVB 10 J 30S ribosomal protein S10 262724  
160 4XEJ 37 AS10, BS10 30S ribosomal protein S10 262724  
161 4V7P 10 AJ, DJ 30S ribosomal protein S10 262724  
162 4V8J 10 AJ, CJ 30S ribosomal protein S10 300852  
163 1N36 10 J 30S RIBOSOMAL PROTEIN S10 274  
164 2ZM6 10 J 30S ribosomal protein S10 274  
165 4LEL 10 QJ, XJ 30S ribosomal protein S10 300852  
166 2F4V 11 J 30S ribosomal protein S10 274  
167 4V9L 9 AJ, CJ 30S ribosomal protein S10 262724  
168 4V5G 10 AJ, CJ 30S RIBOSOMAL PROTEIN S10 300852  
169 1I97 10 J 30S RIBOSOMAL PROTEIN S10 274  
170 4V9J 9 AJ, CJ 30S ribosomal protein S10 262724  
171 1I95 10 J 30S RIBOSOMAL PROTEIN S10 274  
172 4V8O 10 AJ 30S RIBOSOMAL PROTEIN S10 300852  
173 4V9M 9 AJ, CJ 30S ribosomal protein S10 262724  
174 4W29 9 AJ, CJ 30S ribosomal protein S10 262724  
175 4V4Y 12 AM 30S ribosomal protein S10 300852  
176 4V4J 43 k 30S ribosomal protein S10 262724  
177 4V4X 12 AM 30S ribosomal protein S10 300852  
178 4V4Z 13 AM 30S ribosomal protein S10 300852  
179 4V4I 43 k 30S ribosomal protein S10 262724  
180 4V4P 45 BM 30S ribosomal protein S10 300852  
181 4V4R 13 AJ 30S ribosomal protein S10 300852  
182 4V4S 13 AJ 30S ribosomal protein S10 300852  
183 4V4T 13 AJ 30S ribosomal protein S10 300852  
184 4V49 12 AJ 30S ribosomal protein S10 562  
185 4V4A 10 AJ 30S ribosomal protein S10 562  
186 4V4G 10 AJ, CJ, EJ, GJ, IJ 30S ribosomal protein S10 562  
187 4V5N 10 AJ 30S RIBOSOMAL PROTEIN S10 300852  
188 4V5M 10 AJ 30S RIBOSOMAL PROTEIN S10 300852  
189 4V68 17 AJ 30S ribosomal protein S10 274  
190 1ML5 15 M 30S RIBOSOMAL PROTEIN S10 562  
191 1JGO 13 M 30S RIBOSOMAL PROTEIN S10 274  
192 1JGP 13 M 30S RIBOSOMAL PROTEIN S10 274  
193 1JGQ 13 M 30S RIBOSOMAL PROTEIN S10 274  
194 4V42 13 AM 30S RIBOSOMAL PROTEIN S10 274  
 
Sequence Clusters for the Sequence Entities in PDB 4JI8
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 194 28
95% 33 195 46
90% 33 195 48
70% 33 195 59
50% 43 276 35
40% 43 276 45
30% 48 326 46
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 196 26
95% 33 196 42
90% 33 196 44
70% 33 196 55
50% 37 270 42
40% 44 325 36
30% 44 325 47
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 17765
95% 33 203 31
90% 33 203 33
70% 37 282 24
50% 37 282 34
40% 37 282 44
30% 37 282 69
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 197 23
95% 33 197 38
90% 33 197 40
70% 33 197 52
50% 37 275 39
40% 37 275 51
30% 42 326 49
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 195 27
95% 33 195 47
90% 33 195 49
70% 33 195 60
50% 33 195 92
40% 33 195 116
30% 33 195 139
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 199 19
95% 35 204 30
90% 35 204 32
70% 35 204 44
50% 42 283 33
40% 42 283 43
30% 42 283 68
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 191 29
95% 33 196 44
90% 33 196 46
70% 33 196 57
50% 33 196 89
40% 33 196 114
30% 37 273 77
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 110 66
95% 33 190 49
90% 33 194 50
70% 33 194 61
50% 33 194 93
40% 33 194 117
30% 33 194 141
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 123 59
95% 30 172 70
90% 30 172 74
70% 30 172 88
50% 30 172 125
40% 30 172 146
30% 30 172 165
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 174 47
95% 31 174 69
90% 31 174 73
70% 31 174 87
50% 38 273 38
40% 38 273 49
30% 38 273 73
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 196 24
95% 33 197 35
90% 33 197 38
70% 33 197 50
50% 33 197 88
40% 37 270 53
30% 37 270 76
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 146 54
95% 33 195 45
90% 33 195 47
70% 33 195 58
50% 33 195 91
40% 33 195 115
30% 33 195 138
Entity #21: Chains: U - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 186 32
95% 33 186 51
90% 33 186 54
70% 33 186 66
50% 33 186 110
40% 33 186 133
30% 33 186 151
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 171 48
95% 30 171 72
90% 30 171 76
70% 30 171 90
50% 31 210 76
40% 31 210 101
30% 31 210 121
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 189 30
95% 33 197 36
90% 33 197 39
70% 33 197 51
50% 37 270 40
40% 37 271 52
30% 37 271 75
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 196 25
95% 33 196 40
90% 33 196 42
70% 33 196 54
50% 38 274 37
40% 38 274 48
30% 38 276 71
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 201 17
95% 40 207 29
90% 40 207 31
70% 40 207 42
50% 40 207 81
40% 40 207 108
30% 45 244 90
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 200 18
95% 34 201 33
90% 34 201 35
70% 34 201 46
50% 38 242 55
40% 38 243 71
30% 38 243 95
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 196 22
95% 34 196 37
90% 34 200 36
70% 34 200 47
50% 40 276 36
40% 41 278 46
30% 47 330 45
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 106 86
95% 33 196 43
90% 33 196 45
70% 33 196 56
50% 37 270 41
40% 37 270 54
30% 42 321 50
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.