Sequence Similarity Clusters for the Entities in PDB 4JI8

Entity #1 | Chains: A
16S rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 267 39
95 % 56 268 54
90 % 56 268 57
70 % 56 268 69
50 % 74 400 26
40 % 74 400 37
30 % 79 500 32
Entity #11 | Chains: K
RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 269 36
95 % 56 269 50
90 % 56 269 53
70 % 56 269 64
50 % 68 393 35
40 % 75 499 19
30 % 75 499 33
Entity #12 | Chains: L
RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 21843
95 % 56 276 40
90 % 56 276 44
70 % 68 406 22
50 % 68 411 25
40 % 68 411 35
30 % 68 411 55
Entity #13 | Chains: M
RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 270 34
95 % 56 270 47
90 % 56 270 51
70 % 56 270 61
50 % 68 398 33
40 % 68 398 46
30 % 73 500 36
Entity #14 | Chains: N
RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 268 38
95 % 56 268 55
90 % 56 268 58
70 % 56 270 62
50 % 56 270 90
40 % 56 270 112
30 % 56 270 124
Entity #15 | Chains: O
RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 272 30
95 % 58 277 39
90 % 58 277 43
70 % 58 277 55
50 % 73 406 27
40 % 73 409 36
30 % 73 409 56
Entity #16 | Chains: P
RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 264 40
95 % 56 269 52
90 % 56 269 55
70 % 56 269 66
50 % 56 271 89
40 % 56 271 110
30 % 68 394 63
Entity #17 | Chains: Q
RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 48 176 58
95 % 56 263 57
90 % 56 267 59
70 % 56 267 70
50 % 56 267 94
40 % 56 267 115
30 % 56 267 127
Entity #18 | Chains: R
RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 49 183 56
95 % 50 234 64
90 % 50 234 68
70 % 50 234 80
50 % 50 234 108
40 % 50 234 133
30 % 50 234 142
Entity #19 | Chains: S
RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 272 29
95 % 57 272 43
90 % 57 272 48
70 % 57 272 58
50 % 69 398 30
40 % 69 401 40
30 % 69 401 58
Entity #2 | Chains: B
RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 269 32
95 % 56 270 44
90 % 56 270 49
70 % 56 270 59
50 % 68 392 34
40 % 68 395 45
30 % 68 395 62
Entity #20 | Chains: T
RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 217 51
95 % 56 268 53
90 % 56 268 56
70 % 56 268 68
50 % 56 268 92
40 % 56 268 113
30 % 56 268 125
Entity #21 | Chains: U
RIBOSOMAL PROTEIN THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 259 43
95 % 56 259 59
90 % 56 259 63
70 % 56 259 75
50 % 56 259 97
40 % 56 259 120
30 % 56 259 130
Entity #3 | Chains: C
RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 50 233 47
95 % 50 233 65
90 % 50 233 69
70 % 50 233 81
50 % 52 306 83
40 % 52 306 102
30 % 52 306 113
Entity #4 | Chains: D
RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 262 41
95 % 56 270 45
90 % 56 270 50
70 % 56 270 60
50 % 68 394 32
40 % 68 397 42
30 % 68 397 61
Entity #5 | Chains: E
RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 269 35
95 % 56 269 49
90 % 56 269 52
70 % 56 269 63
50 % 69 398 31
40 % 69 398 43
30 % 69 400 59
Entity #6 | Chains: F
RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 274 27
95 % 63 280 36
90 % 63 280 41
70 % 63 280 52
50 % 63 280 87
40 % 63 280 106
30 % 75 334 90
Entity #7 | Chains: G
RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 273 28
95 % 57 274 41
90 % 57 274 45
70 % 57 274 56
50 % 68 338 71
40 % 68 341 79
30 % 68 341 93
Entity #8 | Chains: H
RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 269 33
95 % 57 269 46
90 % 57 273 46
70 % 57 273 57
50 % 71 399 29
40 % 72 403 38
30 % 78 512 30
Entity #9 | Chains: I
RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 52 178 68
95 % 56 269 51
90 % 56 269 54
70 % 56 269 65
50 % 68 393 36
40 % 68 393 47
30 % 73 499 35

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.