Sequence Similarity Clusters for the Entities in PDB 4JI8

Entity #1 | Chains: A
16S rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 237 25
95 % 47 238 38
90 % 47 238 43
70 % 47 238 53
50 % 59 330 30
40 % 59 330 40
30 % 64 396 41
Entity #11 | Chains: K
RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 239 23
95 % 47 239 34
90 % 47 239 39
70 % 47 239 48
50 % 53 324 38
40 % 60 397 27
30 % 60 398 39
Entity #12 | Chains: L
RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 19451
95 % 47 246 22
90 % 47 246 27
70 % 53 335 23
50 % 53 336 29
40 % 53 336 39
30 % 53 336 56
Entity #13 | Chains: M
RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 240 20
95 % 47 240 32
90 % 47 240 37
70 % 47 240 46
50 % 53 329 35
40 % 53 329 46
30 % 58 397 46
Entity #14 | Chains: N
RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 238 24
95 % 47 238 39
90 % 47 238 44
70 % 47 239 51
50 % 47 239 82
40 % 47 239 108
30 % 47 239 124
Entity #15 | Chains: O
RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 242 16
95 % 49 247 21
90 % 49 247 26
70 % 49 247 37
50 % 58 337 27
40 % 58 338 38
30 % 58 338 54
Entity #16 | Chains: P
RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 234 26
95 % 47 239 36
90 % 47 239 41
70 % 47 239 50
50 % 47 239 81
40 % 47 240 106
30 % 53 327 65
Entity #17 | Chains: Q
RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 39 149 57
95 % 47 233 40
90 % 47 237 45
70 % 47 237 54
50 % 47 237 87
40 % 47 237 113
30 % 47 237 128
Entity #18 | Chains: R
RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 156 56
95 % 41 205 63
90 % 41 205 66
70 % 41 205 75
50 % 41 205 109
40 % 41 205 129
30 % 41 205 145
Entity #19 | Chains: S
RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 48 242 15
95 % 48 242 26
90 % 48 242 31
70 % 48 242 42
50 % 54 327 34
40 % 54 327 44
30 % 54 327 60
Entity #2 | Chains: B
RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 239 17
95 % 47 240 27
90 % 47 240 33
70 % 47 240 43
50 % 53 323 37
40 % 53 324 47
30 % 53 324 63
Entity #20 | Chains: T
RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 46 188 48
95 % 47 238 37
90 % 47 238 42
70 % 47 238 52
50 % 47 238 83
40 % 47 238 110
30 % 47 238 126
Entity #21 | Chains: U
RIBOSOMAL PROTEIN THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 229 39
95 % 47 229 54
90 % 47 229 58
70 % 47 229 69
50 % 47 229 97
40 % 47 229 118
30 % 47 229 133
Entity #3 | Chains: C
RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 204 43
95 % 41 204 64
90 % 41 204 67
70 % 41 204 76
50 % 43 252 68
40 % 43 252 93
30 % 43 252 110
Entity #4 | Chains: D
RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 232 27
95 % 47 240 28
90 % 47 240 34
70 % 47 240 44
50 % 53 324 36
40 % 53 325 45
30 % 53 325 62
Entity #5 | Chains: E
RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 239 22
95 % 47 239 33
90 % 47 239 38
70 % 47 239 47
50 % 54 328 33
40 % 54 328 43
30 % 54 330 59
Entity #6 | Chains: F
RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 48 244 13
95 % 54 250 20
90 % 54 250 25
70 % 54 250 35
50 % 54 250 70
40 % 54 250 94
30 % 60 289 80
Entity #7 | Chains: G
RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 48 243 14
95 % 48 244 25
90 % 48 244 29
70 % 48 244 40
50 % 53 289 50
40 % 53 290 62
30 % 53 290 83
Entity #8 | Chains: H
RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 48 239 19
95 % 48 239 31
90 % 48 243 30
70 % 48 243 41
50 % 56 330 31
40 % 57 332 41
30 % 63 401 37
Entity #9 | Chains: I
RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 43 149 70
95 % 47 239 35
90 % 47 239 40
70 % 47 239 49
50 % 53 324 39
40 % 53 324 49
30 % 58 392 47

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.