Sequence Similarity Clusters for the Entities in PDB 4JI8

Entity #1 | Chains: A
16S rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 267 37
95 % 56 268 51
90 % 56 268 54
70 % 56 268 65
50 % 74 394 25
40 % 74 394 37
30 % 79 490 29
Entity #11 | Chains: K
RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 269 35
95 % 56 269 47
90 % 56 269 50
70 % 56 269 60
50 % 68 388 34
40 % 75 487 18
30 % 75 487 31
Entity #12 | Chains: L
RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 21334
95 % 56 276 36
90 % 56 276 40
70 % 68 401 20
50 % 68 403 23
40 % 68 403 34
30 % 68 403 55
Entity #13 | Chains: M
RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 270 33
95 % 56 270 44
90 % 56 270 48
70 % 56 270 57
50 % 68 393 32
40 % 68 393 44
30 % 73 491 32
Entity #14 | Chains: N
RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 268 36
95 % 56 268 52
90 % 56 268 55
70 % 56 270 58
50 % 56 270 87
40 % 56 270 108
30 % 56 270 120
Entity #15 | Chains: O
RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 272 28
95 % 58 277 35
90 % 58 277 39
70 % 58 277 50
50 % 73 401 24
40 % 73 404 33
30 % 73 404 54
Entity #16 | Chains: P
RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 264 38
95 % 56 269 49
90 % 56 269 52
70 % 56 269 62
50 % 56 271 86
40 % 56 271 106
30 % 68 389 63
Entity #17 | Chains: Q
RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 48 176 55
95 % 56 263 53
90 % 56 267 56
70 % 56 267 66
50 % 56 267 90
40 % 56 267 111
30 % 56 267 123
Entity #18 | Chains: R
RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 49 183 53
95 % 50 234 62
90 % 50 234 66
70 % 50 234 77
50 % 50 234 103
40 % 50 234 129
30 % 50 234 140
Entity #19 | Chains: S
RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 272 27
95 % 57 272 40
90 % 57 272 45
70 % 57 272 54
50 % 69 393 28
40 % 69 393 39
30 % 69 393 58
Entity #2 | Chains: B
RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 269 31
95 % 56 270 41
90 % 56 270 46
70 % 56 270 55
50 % 68 387 33
40 % 68 390 42
30 % 68 390 61
Entity #20 | Chains: T
RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 217 49
95 % 56 268 50
90 % 56 268 53
70 % 56 268 64
50 % 56 268 89
40 % 56 268 110
30 % 56 268 122
Entity #21 | Chains: U
RIBOSOMAL PROTEIN THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 259 41
95 % 56 259 56
90 % 56 259 59
70 % 56 259 69
50 % 56 259 94
40 % 56 259 116
30 % 56 259 129
Entity #3 | Chains: C
RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 50 233 45
95 % 50 233 63
90 % 50 233 67
70 % 50 233 78
50 % 52 301 78
40 % 52 301 96
30 % 52 301 113
Entity #4 | Chains: D
RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 262 39
95 % 56 270 42
90 % 56 270 47
70 % 56 270 56
50 % 68 389 31
40 % 68 392 40
30 % 68 392 60
Entity #5 | Chains: E
RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 269 34
95 % 56 269 46
90 % 56 269 49
70 % 56 269 59
50 % 69 393 29
40 % 69 393 41
30 % 69 395 57
Entity #6 | Chains: F
RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 274 24
95 % 63 280 33
90 % 63 280 38
70 % 63 280 49
50 % 63 280 83
40 % 63 280 102
30 % 75 334 87
Entity #7 | Chains: G
RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 273 26
95 % 57 274 37
90 % 57 274 41
70 % 57 274 51
50 % 68 336 65
40 % 68 339 75
30 % 68 339 89
Entity #8 | Chains: H
RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 269 32
95 % 57 269 43
90 % 57 273 42
70 % 57 273 52
50 % 71 394 26
40 % 72 398 36
30 % 78 500 28
Entity #9 | Chains: I
RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 52 178 65
95 % 56 269 48
90 % 56 269 51
70 % 56 269 61
50 % 68 388 35
40 % 68 388 45
30 % 73 488 33

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.