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Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Sequence Clustering and Redundancy Reduction Results
4JI8
Sequence Clusters for the Sequence Entities in PDB 4JI8
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 218 36
95% 43 219 51
90% 43 219 55
70% 43 219 67
50% 55 307 31
40% 55 307 42
30% 60 363 43
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 220 34
95% 43 220 47
90% 43 220 51
70% 43 220 62
50% 49 301 41
40% 56 364 30
30% 56 365 42
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 18503
95% 43 227 38
90% 43 227 42
70% 49 312 22
50% 49 313 30
40% 49 313 41
30% 49 313 56
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 221 32
95% 43 221 45
90% 43 221 49
70% 43 221 60
50% 49 306 38
40% 49 306 50
30% 54 364 46
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 219 35
95% 43 219 52
90% 43 219 56
70% 43 220 65
50% 43 220 92
40% 43 220 114
30% 43 220 127
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 223 29
95% 45 228 26
90% 45 228 31
70% 45 228 43
50% 54 314 29
40% 54 315 38
30% 54 315 54
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 215 37
95% 43 220 49
90% 43 220 53
70% 43 220 64
50% 43 220 91
40% 43 221 112
30% 49 304 70
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 134 59
95% 43 214 56
90% 43 218 58
70% 43 218 69
50% 43 218 94
40% 43 218 116
30% 43 218 129
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 39 145 55
95% 40 194 64
90% 40 194 66
70% 40 194 79
50% 40 194 112
40% 40 194 131
30% 40 194 150
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 44 223 27
95% 44 223 41
90% 44 223 46
70% 44 223 57
50% 50 304 36
40% 50 304 48
30% 50 304 66
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 220 30
95% 43 221 42
90% 43 221 47
70% 43 221 58
50% 49 300 40
40% 49 301 51
30% 49 301 69
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 42 170 49
95% 43 219 50
90% 43 219 54
70% 43 219 66
50% 43 219 93
40% 43 219 115
30% 43 219 128
Entity #21: Chains: U - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 210 40
95% 43 210 59
90% 43 210 62
70% 43 210 73
50% 43 210 99
40% 43 210 121
30% 43 210 135
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 193 45
95% 40 193 65
90% 40 193 67
70% 40 193 80
50% 42 237 76
40% 42 237 101
30% 42 237 118
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 213 38
95% 43 221 43
90% 43 221 48
70% 43 221 59
50% 49 301 39
40% 49 302 49
30% 49 302 68
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 220 33
95% 43 220 46
90% 43 220 50
70% 43 220 61
50% 50 305 35
40% 50 305 47
30% 50 307 62
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 44 225 24
95% 50 231 24
90% 50 231 29
70% 50 231 41
50% 50 231 83
40% 50 231 107
30% 56 270 79
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 44 224 26
95% 44 225 40
90% 44 225 44
70% 44 225 55
50% 49 268 51
40% 49 269 62
30% 49 269 81
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 44 220 31
95% 44 220 44
90% 44 224 45
70% 44 224 56
50% 52 307 34
40% 53 309 43
30% 59 368 40
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 39 130 75
95% 43 220 48
90% 43 220 52
70% 43 220 63
50% 49 301 42
40% 49 301 52
30% 54 359 48
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.