Sequence Similarity Clusters for the Entities in PDB 4JI7

Entity #1 | Chains: A
16S rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 65 254 36
95 % 65 255 49
90 % 65 255 54
70 % 65 255 64
50 % 83 366 28
40 % 83 366 38
30 % 89 440 36
Entity #11 | Chains: K
RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 65 256 34
95 % 65 256 45
90 % 65 256 50
70 % 65 256 59
50 % 77 360 35
40 % 85 442 20
30 % 85 443 33
Entity #12 | Chains: L
RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 20720
95 % 65 263 36
90 % 65 263 41
70 % 77 371 21
50 % 77 372 27
40 % 77 372 37
30 % 77 372 57
Entity #13 | Chains: M
RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 65 257 32
95 % 65 257 43
90 % 65 257 48
70 % 65 257 57
50 % 77 365 32
40 % 77 365 44
30 % 83 441 39
Entity #14 | Chains: N
RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 65 255 35
95 % 65 255 50
90 % 65 255 55
70 % 65 256 62
50 % 65 256 88
40 % 65 256 108
30 % 65 256 120
Entity #15 | Chains: O
RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 65 259 29
95 % 67 264 35
90 % 67 264 40
70 % 67 264 50
50 % 82 373 26
40 % 82 374 36
30 % 82 374 56
Entity #16 | Chains: P
RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 65 251 37
95 % 65 256 47
90 % 65 256 52
70 % 65 256 61
50 % 65 256 87
40 % 65 257 107
30 % 77 363 63
Entity #17 | Chains: Q
RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 163 58
95 % 65 250 51
90 % 65 254 56
70 % 65 254 66
50 % 65 254 90
40 % 65 254 112
30 % 65 254 124
Entity #18 | Chains: R
RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 170 57
95 % 59 221 64
90 % 59 221 69
70 % 59 221 79
50 % 59 221 111
40 % 59 221 132
30 % 59 221 143
Entity #19 | Chains: S
RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 66 259 27
95 % 66 259 38
90 % 66 259 44
70 % 66 259 53
50 % 78 363 31
40 % 78 363 42
30 % 78 363 59
Entity #2 | Chains: B
RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 65 256 30
95 % 65 257 39
90 % 65 257 45
70 % 65 257 54
50 % 77 359 34
40 % 77 360 45
30 % 77 360 61
Entity #20 | Chains: T
RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 62 204 48
95 % 65 255 48
90 % 65 255 53
70 % 65 255 63
50 % 65 255 89
40 % 65 255 111
30 % 65 255 123
Entity #21 | Chains: U
RIBOSOMAL PROTEIN THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 65 246 39
95 % 65 246 54
90 % 65 246 59
70 % 65 246 69
50 % 65 246 96
40 % 65 246 119
30 % 65 246 133
Entity #3 | Chains: C
RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 59 220 45
95 % 59 220 65
90 % 59 220 70
70 % 59 220 80
50 % 61 280 77
40 % 61 280 99
30 % 61 280 112
Entity #4 | Chains: D
RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 65 249 38
95 % 65 257 40
90 % 65 257 46
70 % 65 257 55
50 % 77 360 33
40 % 77 361 43
30 % 77 361 60
Entity #5 | Chains: E
RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 65 256 33
95 % 65 256 44
90 % 65 256 49
70 % 65 256 58
50 % 78 364 30
40 % 78 364 41
30 % 78 366 58
Entity #6 | Chains: F
RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 66 261 25
95 % 72 267 34
90 % 72 267 37
70 % 72 267 46
50 % 72 267 84
40 % 72 267 103
30 % 84 313 82
Entity #7 | Chains: G
RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 66 260 26
95 % 66 261 37
90 % 66 261 42
70 % 66 261 51
50 % 77 313 56
40 % 77 314 74
30 % 77 314 95
Entity #8 | Chains: H
RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 66 256 31
95 % 66 256 42
90 % 66 260 43
70 % 66 260 52
50 % 80 366 29
40 % 81 368 39
30 % 88 447 31
Entity #9 | Chains: I
RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 59 165 73
95 % 65 256 46
90 % 65 256 51
70 % 65 256 60
50 % 77 360 36
40 % 77 360 46
30 % 83 437 40

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.