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Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Sequence Clustering and Redundancy Reduction Results
4JI6
Sequence Clusters for the Sequence Entities in PDB 4JI6
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 252 29
95% 28 254 48
90% 28 254 51
70% 28 254 63
50% 44 369 34
40% 44 369 48
30% 44 374 67
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 255 27
95% 28 255 44
90% 28 255 47
70% 28 255 59
50% 38 363 42
40% 42 403 39
30% 42 403 53
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 17018
95% 28 262 36
90% 28 262 38
70% 38 375 24
50% 38 375 33
40% 38 375 47
30% 38 375 71
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 256 24
95% 28 256 42
90% 28 256 45
70% 28 256 57
50% 38 365 39
40% 38 365 53
30% 40 401 57
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 254 28
95% 28 254 49
90% 28 254 52
70% 28 254 64
50% 28 254 99
40% 28 254 124
30% 28 254 144
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 258 21
95% 30 263 35
90% 30 263 37
70% 30 263 48
50% 43 376 32
40% 43 376 45
30% 43 376 69
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 250 31
95% 28 255 46
90% 28 255 49
70% 28 255 61
50% 28 255 97
40% 28 255 122
30% 38 363 78
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 157 62
95% 28 249 51
90% 28 253 53
70% 28 253 65
50% 28 253 100
40% 28 253 126
30% 28 253 146
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 24 172 49
95% 25 221 64
90% 25 221 68
70% 25 221 81
50% 25 221 116
40% 25 221 144
30% 25 221 166
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 26 223 38
95% 26 223 63
90% 26 223 67
70% 26 223 80
50% 39 366 38
40% 39 366 52
30% 39 366 75
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 255 25
95% 28 256 39
90% 28 256 43
70% 28 256 55
50% 28 256 96
40% 38 363 55
30% 38 363 77
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 193 43
95% 28 254 47
90% 28 254 50
70% 28 254 62
50% 28 254 98
40% 28 254 123
30% 28 254 143
Entity #21: Chains: U - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 238 34
95% 28 238 55
90% 28 238 59
70% 28 238 71
50% 28 238 110
40% 28 238 133
30% 28 238 153
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 219 39
95% 25 219 66
90% 25 219 70
70% 25 219 83
50% 29 282 81
40% 29 282 101
30% 29 282 123
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 248 32
95% 28 256 40
90% 28 256 44
70% 28 256 56
50% 38 363 40
40% 38 364 54
30% 38 364 76
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 255 26
95% 28 255 43
90% 28 255 46
70% 28 255 58
50% 39 367 37
40% 39 367 51
30% 39 369 72
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 260 18
95% 35 266 34
90% 35 266 36
70% 35 266 47
50% 35 266 88
40% 35 266 112
30% 43 313 95
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 259 20
95% 29 260 37
90% 29 260 39
70% 29 260 51
50% 36 308 57
40% 36 309 74
30% 36 309 97
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 255 23
95% 29 255 41
90% 29 259 40
70% 29 259 52
50% 41 369 36
40% 42 371 49
30% 45 408 50
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 24 142 82
95% 28 255 45
90% 28 255 48
70% 28 255 60
50% 38 363 41
40% 38 363 56
30% 40 399 59
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.