POP-OUT | CLOSE
 
Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Sequence Clustering and Redundancy Reduction Results
4JI6
Sequence Clusters for the Sequence Entities in PDB 4JI6
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 265 27
95% 36 267 47
90% 36 267 49
70% 36 267 59
50% 52 382 34
40% 52 382 45
30% 52 387 65
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 268 25
95% 36 268 43
90% 36 268 45
70% 36 268 55
50% 46 376 41
40% 50 416 40
30% 50 416 52
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 17151
95% 36 275 35
90% 36 275 37
70% 46 388 24
50% 46 388 33
40% 46 388 44
30% 46 388 68
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 269 22
95% 36 269 41
90% 36 269 43
70% 36 269 53
50% 46 378 38
40% 46 378 51
30% 48 414 55
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 267 26
95% 36 267 48
90% 36 267 50
70% 36 267 60
50% 36 267 93
40% 36 267 119
30% 36 267 140
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 271 20
95% 38 276 32
90% 38 276 34
70% 38 276 47
50% 51 389 32
40% 51 389 43
30% 51 389 67
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 263 28
95% 36 268 45
90% 36 268 47
70% 36 268 57
50% 36 268 91
40% 36 268 117
30% 46 376 76
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 170 53
95% 36 262 49
90% 36 266 51
70% 36 266 61
50% 36 266 94
40% 36 266 120
30% 36 266 142
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 183 47
95% 33 232 61
90% 33 232 64
70% 33 232 78
50% 33 232 113
40% 33 232 138
30% 33 232 158
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 234 37
95% 34 234 59
90% 34 234 63
70% 34 234 77
50% 47 379 37
40% 47 379 49
30% 47 379 72
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 268 23
95% 36 269 38
90% 36 269 41
70% 36 269 51
50% 36 269 90
40% 46 376 53
30% 46 376 75
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 206 42
95% 36 267 46
90% 36 267 48
70% 36 267 58
50% 36 267 92
40% 36 267 118
30% 36 267 139
Entity #21: Chains: U - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 249 33
95% 36 249 52
90% 36 249 55
70% 36 249 66
50% 36 249 103
40% 36 249 130
30% 36 249 150
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 230 38
95% 33 230 62
90% 33 230 65
70% 33 230 79
50% 37 293 73
40% 37 293 97
30% 37 293 118
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 261 29
95% 36 269 39
90% 36 269 42
70% 36 269 52
50% 46 376 39
40% 46 377 52
30% 46 377 74
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 268 24
95% 36 268 42
90% 36 268 44
70% 36 268 54
50% 47 380 36
40% 47 380 48
30% 47 382 70
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 273 18
95% 43 279 29
90% 43 279 30
70% 43 279 44
50% 43 279 82
40% 43 279 106
30% 51 326 94
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 272 19
95% 37 273 36
90% 37 273 38
70% 37 273 49
50% 44 321 56
40% 44 322 73
30% 44 322 96
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 268 21
95% 37 268 40
90% 37 272 39
70% 37 272 50
50% 49 382 35
40% 50 384 46
30% 53 421 51
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 155 76
95% 36 268 44
90% 36 268 46
70% 36 268 56
50% 46 376 40
40% 46 376 54
30% 48 412 57
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.