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Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Sequence Clustering and Redundancy Reduction Results
4JI6
Sequence Clusters for the Sequence Entities in PDB 4JI6
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 42 217 36
95% 42 218 51
90% 42 218 55
70% 42 218 66
50% 54 306 31
40% 54 306 42
30% 59 368 40
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 42 219 34
95% 42 219 47
90% 42 219 51
70% 42 219 61
50% 48 300 42
40% 55 369 30
30% 55 370 38
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 18679
95% 42 226 39
90% 42 226 43
70% 48 311 22
50% 48 312 30
40% 48 312 41
30% 48 312 57
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 42 220 32
95% 42 220 45
90% 42 220 49
70% 42 220 59
50% 48 305 39
40% 48 305 50
30% 53 369 44
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 42 218 35
95% 42 218 52
90% 42 218 56
70% 42 219 64
50% 42 219 92
40% 42 219 114
30% 42 219 128
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 42 222 29
95% 44 227 36
90% 44 227 40
70% 44 227 52
50% 53 313 29
40% 53 314 39
30% 53 314 54
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 42 214 37
95% 42 219 49
90% 42 219 53
70% 42 219 63
50% 42 219 91
40% 42 220 113
30% 48 303 70
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 133 59
95% 42 213 56
90% 42 217 58
70% 42 217 69
50% 42 217 94
40% 42 217 116
30% 42 217 130
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 145 55
95% 39 194 64
90% 39 194 67
70% 39 194 79
50% 39 194 113
40% 39 194 131
30% 39 194 150
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 222 28
95% 43 222 41
90% 43 222 46
70% 43 222 56
50% 49 303 38
40% 49 303 48
30% 49 303 67
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 42 219 30
95% 42 220 42
90% 42 220 47
70% 42 220 57
50% 48 299 41
40% 48 300 51
30% 48 300 69
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 41 169 49
95% 42 218 50
90% 42 218 54
70% 42 218 65
50% 42 218 93
40% 42 218 115
30% 42 218 129
Entity #21: Chains: U - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 42 209 40
95% 42 209 59
90% 42 209 62
70% 42 209 73
50% 42 209 100
40% 42 209 123
30% 42 209 135
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 39 193 45
95% 39 193 65
90% 39 193 68
70% 39 193 80
50% 41 237 77
40% 41 237 102
30% 41 237 121
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 42 212 38
95% 42 220 43
90% 42 220 48
70% 42 220 58
50% 48 300 40
40% 48 301 49
30% 48 301 68
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 42 219 33
95% 42 219 46
90% 42 219 50
70% 42 219 60
50% 49 304 37
40% 49 304 47
30% 49 306 63
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 224 25
95% 49 230 24
90% 49 230 29
70% 49 230 41
50% 49 230 83
40% 49 230 108
30% 55 269 80
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 223 27
95% 43 224 40
90% 43 224 44
70% 43 224 54
50% 48 267 51
40% 48 268 64
30% 48 268 83
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 219 31
95% 43 219 44
90% 43 223 45
70% 43 223 55
50% 51 306 35
40% 52 308 43
30% 58 373 37
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 130 75
95% 42 219 48
90% 42 219 52
70% 42 219 62
50% 48 300 43
40% 48 300 52
30% 53 364 46
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.