Sequence Similarity Clusters for the Entities in PDB 4JI6

Entity #1 | Chains: A
16S rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 254 36
95 % 55 255 49
90 % 55 255 54
70 % 55 255 64
50 % 73 362 28
40 % 73 362 38
30 % 78 436 36
Entity #11 | Chains: K
RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 256 34
95 % 55 256 45
90 % 55 256 50
70 % 55 256 59
50 % 67 356 35
40 % 74 438 20
30 % 74 439 34
Entity #12 | Chains: L
RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 20672
95 % 55 263 36
90 % 55 263 41
70 % 67 367 22
50 % 67 368 27
40 % 67 368 37
30 % 67 368 57
Entity #13 | Chains: M
RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 257 32
95 % 55 257 43
90 % 55 257 48
70 % 55 257 57
50 % 67 361 32
40 % 67 361 43
30 % 72 437 39
Entity #14 | Chains: N
RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 255 35
95 % 55 255 50
90 % 55 255 55
70 % 55 256 62
50 % 55 256 88
40 % 55 256 108
30 % 55 256 120
Entity #15 | Chains: O
RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 259 29
95 % 57 264 35
90 % 57 264 40
70 % 57 264 50
50 % 72 369 26
40 % 72 370 36
30 % 72 370 56
Entity #16 | Chains: P
RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 251 37
95 % 55 256 47
90 % 55 256 52
70 % 55 256 61
50 % 55 256 87
40 % 55 257 107
30 % 67 359 63
Entity #17 | Chains: Q
RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 163 58
95 % 55 250 51
90 % 55 254 56
70 % 55 254 66
50 % 55 254 90
40 % 55 254 111
30 % 55 254 123
Entity #18 | Chains: R
RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 48 170 57
95 % 49 221 64
90 % 49 221 69
70 % 49 221 79
50 % 49 221 111
40 % 49 221 132
30 % 49 221 143
Entity #19 | Chains: S
RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 259 27
95 % 56 259 38
90 % 56 259 44
70 % 56 259 53
50 % 68 359 31
40 % 68 359 41
30 % 68 359 59
Entity #2 | Chains: B
RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 256 30
95 % 55 257 39
90 % 55 257 45
70 % 55 257 54
50 % 67 355 34
40 % 67 356 44
30 % 67 356 62
Entity #20 | Chains: T
RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 54 204 48
95 % 55 255 48
90 % 55 255 53
70 % 55 255 63
50 % 55 255 89
40 % 55 255 110
30 % 55 255 122
Entity #21 | Chains: U
RIBOSOMAL PROTEIN THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 246 39
95 % 55 246 54
90 % 55 246 59
70 % 55 246 69
50 % 55 246 95
40 % 55 246 118
30 % 55 246 131
Entity #3 | Chains: C
RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 49 220 45
95 % 49 220 65
90 % 49 220 70
70 % 49 220 80
50 % 51 276 78
40 % 51 276 100
30 % 51 276 112
Entity #4 | Chains: D
RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 249 38
95 % 55 257 40
90 % 55 257 46
70 % 55 257 55
50 % 67 356 33
40 % 67 357 42
30 % 67 357 61
Entity #5 | Chains: E
RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 256 33
95 % 55 256 44
90 % 55 256 49
70 % 55 256 58
50 % 68 360 30
40 % 68 360 40
30 % 68 362 58
Entity #6 | Chains: F
RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 261 25
95 % 62 267 34
90 % 62 267 37
70 % 62 267 46
50 % 62 267 84
40 % 62 267 103
30 % 74 313 77
Entity #7 | Chains: G
RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 260 26
95 % 56 261 37
90 % 56 261 42
70 % 56 261 51
50 % 67 313 54
40 % 67 314 68
30 % 67 314 89
Entity #8 | Chains: H
RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 256 31
95 % 56 256 42
90 % 56 260 43
70 % 56 260 52
50 % 70 362 29
40 % 71 364 39
30 % 77 443 33
Entity #9 | Chains: I
RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 51 165 73
95 % 55 256 46
90 % 55 256 51
70 % 55 256 60
50 % 67 356 36
40 % 67 356 46
30 % 72 433 40

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.