Sequence Similarity Clusters for the Entities in PDB 4JI6

Entity #1 | Chains: A
16S rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 252 35
95 % 55 253 47
90 % 55 253 52
70 % 55 253 62
50 % 67 348 28
40 % 67 348 38
30 % 72 418 37
Entity #11 | Chains: K
RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 254 33
95 % 55 254 43
90 % 55 254 48
70 % 55 254 57
50 % 61 342 36
40 % 68 419 22
30 % 68 420 35
Entity #12 | Chains: L
RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 20044
95 % 55 261 35
90 % 55 261 39
70 % 61 353 23
50 % 61 354 27
40 % 61 354 37
30 % 61 354 56
Entity #13 | Chains: M
RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 255 30
95 % 55 255 41
90 % 55 255 46
70 % 55 255 55
50 % 61 347 33
40 % 61 347 45
30 % 66 419 42
Entity #14 | Chains: N
RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 253 34
95 % 55 253 48
90 % 55 253 53
70 % 55 254 60
50 % 55 254 86
40 % 55 254 106
30 % 55 254 118
Entity #15 | Chains: O
RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 257 27
95 % 57 262 33
90 % 57 262 37
70 % 57 262 48
50 % 66 355 26
40 % 66 356 36
30 % 66 356 55
Entity #16 | Chains: P
RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 249 36
95 % 55 254 45
90 % 55 254 50
70 % 55 254 59
50 % 55 254 85
40 % 55 255 105
30 % 61 345 62
Entity #17 | Chains: Q
RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 161 56
95 % 55 248 50
90 % 55 252 54
70 % 55 252 63
50 % 55 252 88
40 % 55 252 108
30 % 55 252 120
Entity #18 | Chains: R
RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 48 168 55
95 % 49 219 62
90 % 49 219 66
70 % 49 219 77
50 % 49 219 107
40 % 49 219 128
30 % 49 219 142
Entity #19 | Chains: S
RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 257 26
95 % 56 257 37
90 % 56 257 43
70 % 56 257 52
50 % 62 345 31
40 % 62 345 42
30 % 62 345 59
Entity #2 | Chains: B
RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 254 28
95 % 55 255 38
90 % 55 255 44
70 % 55 255 53
50 % 61 341 35
40 % 61 342 46
30 % 61 342 61
Entity #20 | Chains: T
RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 54 202 47
95 % 55 253 46
90 % 55 253 51
70 % 55 253 61
50 % 55 253 87
40 % 55 253 107
30 % 55 253 119
Entity #21 | Chains: U
RIBOSOMAL PROTEIN THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 244 38
95 % 55 244 54
90 % 55 244 57
70 % 55 244 67
50 % 55 244 91
40 % 55 244 113
30 % 55 244 126
Entity #3 | Chains: C
RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 49 218 43
95 % 49 218 63
90 % 49 218 67
70 % 49 218 78
50 % 51 269 77
40 % 51 269 97
30 % 51 269 112
Entity #4 | Chains: D
RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 247 37
95 % 55 255 39
90 % 55 255 45
70 % 55 255 54
50 % 61 342 34
40 % 61 343 44
30 % 61 343 60
Entity #5 | Chains: E
RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 254 32
95 % 55 254 42
90 % 55 254 47
70 % 55 254 56
50 % 62 346 30
40 % 62 346 41
30 % 62 348 57
Entity #6 | Chains: F
RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 259 24
95 % 62 265 21
90 % 62 265 24
70 % 62 265 32
50 % 62 265 79
40 % 62 265 100
30 % 68 304 78
Entity #7 | Chains: G
RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 258 25
95 % 56 259 36
90 % 56 259 41
70 % 56 259 50
50 % 61 304 51
40 % 61 305 63
30 % 61 305 86
Entity #8 | Chains: H
RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 254 29
95 % 56 254 40
90 % 56 258 42
70 % 56 258 51
50 % 64 348 29
40 % 65 350 39
30 % 71 423 33
Entity #9 | Chains: I
RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 51 163 72
95 % 55 254 44
90 % 55 254 49
70 % 55 254 58
50 % 61 342 37
40 % 61 342 47
30 % 66 414 44

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.