Sequence Similarity Clusters for the Entities in PDB 4JI6

Entity #1 | Chains: A
16S rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 269 39
95 % 56 270 53
90 % 56 270 58
70 % 56 270 68
50 % 74 421 26
40 % 74 421 38
30 % 80 528 32
Entity #11 | Chains: K
RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 271 35
95 % 56 271 49
90 % 56 271 54
70 % 56 271 64
50 % 68 415 32
40 % 76 537 19
30 % 76 537 31
Entity #12 | Chains: L
RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 22789
95 % 56 278 39
90 % 56 278 44
70 % 68 422 19
50 % 68 432 24
40 % 68 432 35
30 % 68 432 55
Entity #13 | Chains: M
RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 272 33
95 % 56 272 46
90 % 56 272 51
70 % 56 272 62
50 % 68 419 31
40 % 68 419 43
30 % 74 527 36
Entity #14 | Chains: N
RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 270 36
95 % 56 270 54
90 % 56 270 59
70 % 56 279 54
50 % 56 279 90
40 % 56 279 113
30 % 56 279 123
Entity #15 | Chains: O
RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 274 30
95 % 58 279 38
90 % 58 279 43
70 % 58 279 53
50 % 73 428 25
40 % 73 433 34
30 % 73 433 54
Entity #16 | Chains: P
RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 266 41
95 % 56 271 51
90 % 56 271 56
70 % 56 271 66
50 % 56 278 91
40 % 56 278 114
30 % 68 413 63
Entity #17 | Chains: Q
RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 48 178 58
95 % 56 265 56
90 % 56 269 60
70 % 56 269 69
50 % 56 269 94
40 % 56 269 117
30 % 56 269 128
Entity #18 | Chains: R
RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 49 185 56
95 % 50 236 65
90 % 50 236 69
70 % 50 236 81
50 % 50 236 111
40 % 50 236 135
30 % 50 236 144
Entity #19 | Chains: S
RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 274 29
95 % 57 274 42
90 % 57 274 48
70 % 57 274 58
50 % 69 421 28
40 % 69 424 40
30 % 69 424 57
Entity #2 | Chains: B
RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 271 31
95 % 56 272 43
90 % 56 272 49
70 % 56 272 59
50 % 68 409 36
40 % 68 414 45
30 % 68 414 62
Entity #20 | Chains: T
RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 219 50
95 % 56 270 52
90 % 56 270 57
70 % 56 270 67
50 % 56 270 93
40 % 56 270 116
30 % 56 270 127
Entity #21 | Chains: U
RIBOSOMAL PROTEIN THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 261 43
95 % 56 261 59
90 % 56 261 63
70 % 56 261 74
50 % 56 261 98
40 % 56 261 121
30 % 56 261 133
Entity #3 | Chains: C
RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 50 235 48
95 % 50 235 66
90 % 50 235 70
70 % 50 235 82
50 % 52 309 84
40 % 52 309 103
30 % 52 309 116
Entity #4 | Chains: D
RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 264 42
95 % 56 272 44
90 % 56 272 50
70 % 56 272 60
50 % 68 416 29
40 % 68 421 41
30 % 68 421 58
Entity #5 | Chains: E
RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 271 34
95 % 56 271 48
90 % 56 271 53
70 % 56 271 63
50 % 69 417 30
40 % 69 417 42
30 % 69 419 60
Entity #6 | Chains: F
RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 276 27
95 % 63 282 37
90 % 63 282 42
70 % 63 282 51
50 % 63 282 88
40 % 63 282 110
30 % 75 355 95
Entity #7 | Chains: G
RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 275 28
95 % 57 276 41
90 % 57 276 46
70 % 57 276 56
50 % 68 356 66
40 % 68 361 84
30 % 68 361 96
Entity #8 | Chains: H
RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 271 32
95 % 57 271 45
90 % 57 275 47
70 % 57 275 57
50 % 71 421 27
40 % 72 427 37
30 % 79 542 30
Entity #9 | Chains: I
RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 52 180 69
95 % 56 271 50
90 % 56 271 55
70 % 56 271 65
50 % 68 411 35
40 % 68 411 48
30 % 74 526 34

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.