Sequence Similarity Clusters for the Entities in PDB 4JI5

Entity #1 | Chains: A
16S rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 119 252 35
95 % 119 253 48
90 % 119 253 53
70 % 119 253 63
50 % 143 348 28
40 % 143 348 38
30 % 158 420 36
Entity #11 | Chains: K
RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 119 254 33
95 % 119 254 44
90 % 119 254 49
70 % 119 254 58
50 % 137 342 36
40 % 154 421 22
30 % 154 422 35
Entity #12 | Chains: L
RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 37 47 484
95 % 119 261 35
90 % 119 261 39
70 % 137 353 23
50 % 137 354 27
40 % 137 354 37
30 % 137 354 56
Entity #13 | Chains: M
RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 119 255 30
95 % 119 255 41
90 % 119 255 46
70 % 119 255 55
50 % 140 347 33
40 % 140 347 45
30 % 155 421 41
Entity #14 | Chains: N
RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 119 253 34
95 % 119 253 49
90 % 119 253 54
70 % 119 254 61
50 % 119 254 86
40 % 119 254 106
30 % 119 254 119
Entity #15 | Chains: O
RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 119 257 27
95 % 123 262 34
90 % 123 262 38
70 % 123 262 49
50 % 144 355 26
40 % 144 356 36
30 % 144 356 55
Entity #16 | Chains: P
RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 119 249 36
95 % 119 254 46
90 % 119 254 51
70 % 119 254 60
50 % 119 254 85
40 % 119 255 105
30 % 140 345 63
Entity #17 | Chains: Q
RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 88 161 57
95 % 118 248 50
90 % 119 252 55
70 % 119 252 64
50 % 119 252 88
40 % 119 252 108
30 % 119 252 121
Entity #18 | Chains: R
RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 94 168 56
95 % 107 219 63
90 % 107 219 68
70 % 107 219 78
50 % 107 219 108
40 % 107 219 129
30 % 107 219 142
Entity #19 | Chains: S
RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 120 257 26
95 % 120 257 37
90 % 120 257 43
70 % 120 257 52
50 % 138 345 31
40 % 138 345 42
30 % 138 345 60
Entity #2 | Chains: B
RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 119 254 28
95 % 119 255 38
90 % 119 255 44
70 % 119 255 53
50 % 137 341 35
40 % 137 342 47
30 % 137 342 62
Entity #20 | Chains: T
RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 107 202 47
95 % 119 253 47
90 % 119 253 52
70 % 119 253 62
50 % 119 253 87
40 % 119 253 107
30 % 119 253 120
Entity #21 | Chains: U
RIBOSOMAL PROTEIN THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 119 244 38
95 % 119 244 54
90 % 119 244 57
70 % 119 244 68
50 % 119 244 92
40 % 119 244 114
30 % 119 244 128
Entity #3 | Chains: C
RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 106 218 44
95 % 106 218 64
90 % 106 218 69
70 % 106 218 79
50 % 110 269 79
40 % 110 269 97
30 % 110 269 112
Entity #4 | Chains: D
RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 118 247 37
95 % 119 255 39
90 % 119 255 45
70 % 119 255 54
50 % 137 342 34
40 % 137 343 44
30 % 137 343 61
Entity #5 | Chains: E
RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 119 254 32
95 % 119 254 43
90 % 119 254 48
70 % 119 254 57
50 % 138 346 30
40 % 138 346 41
30 % 138 348 57
Entity #6 | Chains: F
RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 121 259 24
95 % 127 265 33
90 % 127 265 36
70 % 127 265 44
50 % 127 265 82
40 % 127 265 100
30 % 143 304 78
Entity #7 | Chains: G
RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 120 258 25
95 % 120 259 36
90 % 120 259 41
70 % 120 259 50
50 % 138 304 51
40 % 138 305 63
30 % 138 305 87
Entity #8 | Chains: H
RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 119 254 29
95 % 119 254 40
90 % 120 258 42
70 % 120 258 51
50 % 140 348 29
40 % 141 350 39
30 % 157 425 33
Entity #9 | Chains: I
RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 100 163 72
95 % 119 254 45
90 % 119 254 50
70 % 119 254 59
50 % 137 342 37
40 % 137 342 48
30 % 152 416 42

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.