POP-OUT | CLOSE

An Information Portal to 109822 Biological Macromolecular Structures

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Sequence Clustering and Redundancy Reduction Results
4JI5
Sequence Clusters for the Sequence Entities in PDB 4JI5
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 218 36
95% 94 219 50
90% 94 219 54
70% 94 219 65
50% 117 304 31
40% 117 304 42
30% 131 357 42
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 220 34
95% 94 220 46
90% 94 220 50
70% 94 220 60
50% 111 298 42
40% 127 358 31
30% 127 359 41
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 36 710
95% 94 227 27
90% 94 227 32
70% 111 309 22
50% 111 310 30
40% 111 310 41
30% 111 310 57
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 221 32
95% 94 221 44
90% 94 221 48
70% 94 221 58
50% 114 303 39
40% 114 303 50
30% 128 358 46
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 219 35
95% 94 219 51
90% 94 219 55
70% 94 220 63
50% 94 220 92
40% 94 220 113
30% 94 220 126
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 223 28
95% 98 228 25
90% 98 228 29
70% 98 228 41
50% 118 311 29
40% 118 312 39
30% 118 312 55
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 215 37
95% 94 220 48
90% 94 220 52
70% 94 220 62
50% 94 220 91
40% 94 221 112
30% 114 301 69
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 63 134 58
95% 93 214 56
90% 94 218 57
70% 94 218 67
50% 94 218 94
40% 94 218 116
30% 94 218 128
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 76 145 55
95% 89 194 64
90% 89 194 66
70% 89 194 78
50% 89 194 110
40% 89 194 129
30% 89 194 148
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 223 27
95% 95 223 40
90% 95 223 45
70% 95 223 55
50% 112 301 36
40% 112 301 47
30% 112 301 66
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 220 30
95% 94 221 41
90% 94 221 46
70% 94 221 56
50% 111 297 41
40% 111 298 51
30% 111 298 68
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 82 170 49
95% 94 219 49
90% 94 219 53
70% 94 219 64
50% 94 219 93
40% 94 219 114
30% 94 219 127
Entity #21: Chains: U - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 210 39
95% 94 210 59
90% 94 210 62
70% 94 210 72
50% 94 210 98
40% 94 210 120
30% 94 210 133
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 88 193 45
95% 88 193 65
90% 88 193 67
70% 88 193 79
50% 91 234 78
40% 91 234 99
30% 91 234 118
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 93 213 38
95% 94 221 42
90% 94 221 47
70% 94 221 57
50% 111 298 40
40% 111 299 49
30% 111 299 67
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 220 33
95% 94 220 45
90% 94 220 49
70% 94 220 59
50% 112 302 35
40% 112 302 46
30% 112 304 64
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 96 225 24
95% 102 231 23
90% 102 231 28
70% 102 231 39
50% 102 231 82
40% 102 231 104
30% 118 270 77
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 224 26
95% 95 225 38
90% 95 225 42
70% 95 225 52
50% 113 268 49
40% 113 269 60
30% 113 269 80
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 220 31
95% 94 220 43
90% 95 224 43
70% 95 224 53
50% 114 304 33
40% 115 306 44
30% 130 362 40
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 75 130 75
95% 94 220 47
90% 94 220 51
70% 94 220 61
50% 111 298 43
40% 111 298 52
30% 125 353 47
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.