Sequence Similarity Clusters for the Entities in PDB 4JI4

Entity #1 | Chains: A
16S rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 104 253 35
95 % 104 254 48
90 % 104 254 53
70 % 104 254 63
50 % 130 356 28
40 % 130 356 38
30 % 143 429 35
Entity #11 | Chains: K
RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 104 255 33
95 % 104 255 43
90 % 104 255 48
70 % 104 255 57
50 % 124 350 35
40 % 139 430 21
30 % 139 431 34
Entity #12 | Chains: L
RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 20313
95 % 104 262 35
90 % 104 262 40
70 % 124 361 23
50 % 124 362 27
40 % 124 362 37
30 % 124 362 56
Entity #13 | Chains: M
RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 104 256 31
95 % 104 256 41
90 % 104 256 46
70 % 104 256 55
50 % 127 355 32
40 % 127 355 43
30 % 140 430 38
Entity #14 | Chains: N
RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 104 254 34
95 % 104 254 49
90 % 104 254 54
70 % 104 255 60
50 % 104 255 86
40 % 104 255 107
30 % 104 255 119
Entity #15 | Chains: O
RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 104 258 27
95 % 108 263 34
90 % 108 263 39
70 % 108 263 48
50 % 131 363 26
40 % 131 364 36
30 % 131 364 55
Entity #16 | Chains: P
RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 104 250 36
95 % 104 255 45
90 % 104 255 50
70 % 104 255 59
50 % 104 255 85
40 % 104 256 106
30 % 127 353 61
Entity #17 | Chains: Q
RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 80 162 57
95 % 104 249 51
90 % 104 253 55
70 % 104 253 64
50 % 104 253 88
40 % 104 253 109
30 % 104 253 122
Entity #18 | Chains: R
RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 85 169 56
95 % 94 220 63
90 % 94 220 68
70 % 94 220 78
50 % 94 220 108
40 % 94 220 131
30 % 94 220 142
Entity #19 | Chains: S
RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 105 258 26
95 % 105 258 37
90 % 105 258 43
70 % 105 258 52
50 % 125 353 31
40 % 125 353 41
30 % 125 353 58
Entity #2 | Chains: B
RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 104 255 28
95 % 104 256 38
90 % 104 256 44
70 % 104 256 53
50 % 124 349 34
40 % 124 350 44
30 % 124 350 60
Entity #20 | Chains: T
RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 93 203 47
95 % 104 254 47
90 % 104 254 52
70 % 104 254 62
50 % 104 254 87
40 % 104 254 108
30 % 104 254 120
Entity #21 | Chains: U
RIBOSOMAL PROTEIN THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 104 245 38
95 % 104 245 53
90 % 104 245 57
70 % 104 245 68
50 % 104 245 93
40 % 104 245 117
30 % 104 245 131
Entity #3 | Chains: C
RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 93 219 44
95 % 93 219 64
90 % 93 219 69
70 % 93 219 79
50 % 97 273 78
40 % 97 273 99
30 % 97 273 112
Entity #4 | Chains: D
RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 103 248 37
95 % 104 256 39
90 % 104 256 45
70 % 104 256 54
50 % 124 350 33
40 % 124 351 42
30 % 124 351 59
Entity #5 | Chains: E
RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 104 255 32
95 % 104 255 42
90 % 104 255 47
70 % 104 255 56
50 % 125 354 30
40 % 125 354 40
30 % 125 356 57
Entity #6 | Chains: F
RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 106 260 24
95 % 112 266 33
90 % 112 266 36
70 % 112 266 45
50 % 112 266 83
40 % 112 266 101
30 % 130 309 77
Entity #7 | Chains: G
RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 105 259 25
95 % 105 260 36
90 % 105 260 41
70 % 105 260 50
50 % 125 309 53
40 % 125 310 66
30 % 125 310 86
Entity #8 | Chains: H
RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 105 255 30
95 % 105 255 40
90 % 105 259 42
70 % 105 259 51
50 % 127 356 29
40 % 128 358 39
30 % 142 434 32
Entity #9 | Chains: I
RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 89 164 72
95 % 104 255 44
90 % 104 255 49
70 % 104 255 58
50 % 124 350 36
40 % 124 350 45
30 % 137 425 39

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.