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Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Sequence Clustering and Redundancy Reduction Results
4JI4
Sequence Clusters for the Sequence Entities in PDB 4JI4
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 80 265 27
95% 80 267 47
90% 80 267 49
70% 80 267 59
50% 118 384 34
40% 118 384 46
30% 118 389 65
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 80 268 25
95% 80 268 43
90% 80 268 45
70% 80 268 55
50% 112 378 41
40% 140 454 34
30% 140 454 44
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 4 17319
95% 80 275 35
90% 80 275 37
70% 112 390 24
50% 112 390 33
40% 112 390 45
30% 112 390 68
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 80 269 22
95% 80 269 41
90% 80 269 43
70% 80 269 53
50% 112 380 38
40% 112 380 51
30% 138 452 47
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 80 267 26
95% 80 267 48
90% 80 267 50
70% 80 267 60
50% 80 267 94
40% 80 267 119
30% 80 267 141
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 80 271 20
95% 84 276 32
90% 84 276 34
70% 84 276 47
50% 119 391 32
40% 119 391 43
30% 119 391 67
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 80 263 28
95% 80 268 45
90% 80 268 47
70% 80 268 57
50% 80 268 92
40% 80 268 117
30% 112 378 76
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 56 170 54
95% 80 262 49
90% 80 266 51
70% 80 266 61
50% 80 266 95
40% 80 266 120
30% 80 266 142
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 183 48
95% 75 232 61
90% 75 232 64
70% 75 232 78
50% 75 232 116
40% 75 232 139
30% 75 232 161
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 75 234 37
95% 75 234 59
90% 75 234 63
70% 75 234 77
50% 113 381 37
40% 113 381 49
30% 113 381 72
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 80 268 23
95% 80 269 38
90% 80 269 41
70% 80 269 51
50% 80 269 91
40% 112 378 53
30% 112 378 75
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 69 206 42
95% 80 267 46
90% 80 267 48
70% 80 267 58
50% 80 267 93
40% 80 267 118
30% 80 267 140
Entity #21: Chains: U - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 80 249 34
95% 80 249 53
90% 80 249 55
70% 80 249 68
50% 80 249 105
40% 80 249 132
30% 80 249 151
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 74 230 38
95% 74 230 63
90% 74 230 66
70% 74 230 80
50% 86 293 74
40% 86 293 99
30% 86 293 119
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 79 261 29
95% 80 269 39
90% 80 269 42
70% 80 269 52
50% 112 378 39
40% 112 379 52
30% 112 379 74
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 80 268 24
95% 80 268 42
90% 80 268 44
70% 80 268 54
50% 113 382 36
40% 113 382 48
30% 113 384 71
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 82 273 18
95% 88 279 29
90% 88 279 30
70% 88 279 44
50% 88 279 86
40% 88 279 108
30% 110 328 94
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 81 272 19
95% 81 273 36
90% 81 273 38
70% 81 273 49
50% 102 323 56
40% 102 324 74
30% 102 324 96
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 81 268 21
95% 81 268 40
90% 81 272 39
70% 81 272 50
50% 115 384 35
40% 116 386 47
30% 143 459 43
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 65 155 76
95% 80 268 44
90% 80 268 46
70% 80 268 56
50% 112 378 40
40% 112 378 54
30% 138 450 50
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.