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Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Sequence Clustering and Redundancy Reduction Results
4JI4
Sequence Clusters for the Sequence Entities in PDB 4JI4
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 64 187 28
95% 64 188 47
90% 64 188 50
70% 64 188 60
50% 84 269 34
40% 84 269 45
30% 84 274 65
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 64 189 26
95% 64 189 43
90% 64 189 46
70% 64 189 56
50% 78 263 41
40% 93 316 35
30% 93 316 45
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 4 17465
95% 64 196 35
90% 64 196 37
70% 78 275 24
50% 78 275 33
40% 78 275 44
30% 78 275 69
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 64 190 23
95% 64 190 41
90% 64 190 44
70% 64 190 54
50% 81 268 38
40% 81 268 51
30% 94 317 48
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 64 188 27
95% 64 188 48
90% 64 188 51
70% 64 188 61
50% 64 188 94
40% 64 188 119
30% 64 188 142
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 64 192 21
95% 68 197 33
90% 68 197 35
70% 68 197 47
50% 85 276 32
40% 85 276 43
30% 85 276 66
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 64 184 29
95% 64 189 45
90% 64 189 48
70% 64 189 58
50% 64 189 92
40% 64 189 117
30% 81 266 76
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 104 55
95% 64 183 49
90% 64 187 52
70% 64 187 62
50% 64 187 95
40% 64 187 120
30% 64 187 143
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 50 119 49
95% 59 168 61
90% 59 168 64
70% 59 168 80
50% 59 168 117
40% 59 168 139
30% 59 168 161
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 59 170 37
95% 59 170 59
90% 59 170 63
70% 59 170 78
50% 79 266 37
40% 79 266 50
30% 79 266 73
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 64 189 24
95% 64 190 38
90% 64 190 42
70% 64 190 52
50% 64 190 91
40% 78 263 54
30% 78 263 75
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 53 140 42
95% 64 188 46
90% 64 188 49
70% 64 188 59
50% 64 188 93
40% 64 188 118
30% 64 188 141
Entity #21: Chains: U - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 64 179 34
95% 64 179 54
90% 64 179 56
70% 64 179 69
50% 64 179 105
40% 64 179 132
30% 64 179 151
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 58 166 38
95% 58 166 63
90% 58 166 66
70% 58 166 82
50% 61 205 77
40% 61 205 101
30% 61 205 120
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 63 182 31
95% 64 190 39
90% 64 190 43
70% 64 190 53
50% 78 263 39
40% 78 264 52
30% 78 264 74
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 64 189 25
95% 64 189 42
90% 64 189 45
70% 64 189 55
50% 79 267 36
40% 79 267 49
30% 79 269 72
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 66 194 19
95% 72 200 29
90% 72 200 30
70% 72 200 45
50% 72 200 86
40% 72 200 108
30% 85 237 93
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 65 193 20
95% 65 194 36
90% 65 194 38
70% 65 194 50
50% 80 235 56
40% 80 236 73
30% 80 236 96
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 65 189 22
95% 65 189 40
90% 65 193 39
70% 65 193 51
50% 81 269 35
40% 82 271 46
30% 96 321 44
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 49 102 76
95% 64 189 44
90% 64 189 47
70% 64 189 57
50% 78 263 40
40% 78 263 55
30% 91 312 51
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.