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Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Sequence Clustering and Redundancy Reduction Results
4JI3
Sequence Clusters for the Sequence Entities in PDB 4JI3
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 257 29
95% 27 259 47
90% 27 259 51
70% 27 259 61
50% 43 374 34
40% 43 374 46
30% 43 379 66
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 260 26
95% 27 260 43
90% 27 260 46
70% 27 260 57
50% 37 368 42
40% 41 408 40
30% 41 408 53
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 4 17086
95% 27 267 36
90% 27 267 38
70% 37 380 24
50% 37 380 33
40% 37 380 45
30% 37 380 69
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 261 22
95% 27 261 41
90% 27 261 43
70% 27 261 55
50% 37 370 39
40% 37 370 53
30% 39 406 57
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 259 27
95% 27 259 48
90% 27 259 52
70% 27 259 62
50% 27 259 97
40% 27 259 123
30% 27 259 141
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 263 20
95% 29 268 35
90% 29 268 37
70% 29 268 48
50% 42 381 32
40% 42 381 43
30% 42 381 68
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 255 30
95% 27 260 45
90% 27 260 48
70% 27 260 59
50% 27 260 94
40% 27 260 120
30% 37 368 78
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 162 57
95% 27 254 50
90% 27 258 53
70% 27 258 63
50% 27 258 99
40% 27 258 124
30% 27 258 142
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 23 175 50
95% 24 224 63
90% 24 224 67
70% 24 224 81
50% 24 224 115
40% 24 224 141
30% 24 224 162
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 226 37
95% 25 226 62
90% 25 226 65
70% 25 226 80
50% 38 371 38
40% 38 371 51
30% 38 371 75
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 260 24
95% 27 261 38
90% 27 261 41
70% 27 261 52
50% 27 261 92
40% 37 368 55
30% 37 368 77
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 26 198 43
95% 27 259 46
90% 27 259 50
70% 27 259 60
50% 27 259 96
40% 27 259 122
30% 27 259 140
Entity #21: Chains: U - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 241 34
95% 27 241 55
90% 27 241 58
70% 27 241 69
50% 27 241 107
40% 27 241 130
30% 27 241 151
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 24 222 39
95% 24 222 65
90% 24 222 69
70% 24 222 82
50% 28 285 76
40% 28 285 100
30% 28 285 124
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 253 31
95% 27 261 39
90% 27 261 42
70% 27 261 53
50% 37 368 40
40% 37 369 54
30% 37 369 76
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 260 25
95% 27 260 42
90% 27 260 44
70% 27 260 56
50% 38 372 37
40% 38 372 50
30% 38 374 72
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 265 18
95% 34 271 33
90% 34 271 35
70% 34 271 47
50% 34 271 87
40% 34 271 112
30% 42 318 94
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 264 19
95% 28 265 37
90% 28 265 39
70% 28 265 49
50% 35 313 56
40% 35 314 72
30% 35 314 96
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 260 21
95% 28 260 40
90% 28 264 40
70% 28 264 50
50% 40 374 35
40% 41 376 47
30% 44 413 52
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 23 147 79
95% 27 260 44
90% 27 260 47
70% 27 260 58
50% 37 368 41
40% 37 368 56
30% 39 404 58
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.