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Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Sequence Clustering and Redundancy Reduction Results
4JI3
Sequence Clusters for the Sequence Entities in PDB 4JI3
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 218 36
95% 40 219 51
90% 40 219 55
70% 40 219 67
50% 51 306 33
40% 51 306 43
30% 56 360 42
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 220 34
95% 40 220 47
90% 40 220 51
70% 40 220 62
50% 45 300 42
40% 52 361 30
30% 52 362 41
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 4 18460
95% 40 227 38
90% 40 227 42
70% 45 311 23
50% 45 312 32
40% 45 312 42
30% 45 312 57
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 221 32
95% 40 221 45
90% 40 221 49
70% 40 221 60
50% 45 305 38
40% 45 305 50
30% 50 361 47
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 219 35
95% 40 219 52
90% 40 219 56
70% 40 220 65
50% 40 220 92
40% 40 220 113
30% 40 220 126
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 223 29
95% 42 228 26
90% 42 228 31
70% 42 228 43
50% 50 313 29
40% 50 314 40
30% 50 314 55
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 215 37
95% 40 220 49
90% 40 220 53
70% 40 220 64
50% 40 220 91
40% 40 221 112
30% 45 303 70
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 134 59
95% 40 214 56
90% 40 218 58
70% 40 218 69
50% 40 218 94
40% 40 218 116
30% 40 218 128
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 145 55
95% 37 194 64
90% 37 194 66
70% 37 194 79
50% 37 194 111
40% 37 194 130
30% 37 194 150
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 41 223 27
95% 41 223 41
90% 41 223 46
70% 41 223 57
50% 46 303 37
40% 46 303 48
30% 46 303 67
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 220 30
95% 40 221 42
90% 40 221 47
70% 40 221 58
50% 45 299 41
40% 45 300 51
30% 45 300 69
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 39 170 49
95% 40 219 50
90% 40 219 54
70% 40 219 66
50% 40 219 93
40% 40 219 114
30% 40 219 127
Entity #21: Chains: U - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 210 40
95% 40 210 59
90% 40 210 62
70% 40 210 73
50% 40 210 98
40% 40 210 120
30% 40 210 133
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 193 45
95% 37 193 65
90% 37 193 67
70% 37 193 80
50% 38 236 78
40% 38 236 99
30% 38 236 119
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 213 38
95% 40 221 43
90% 40 221 48
70% 40 221 59
50% 45 300 39
40% 45 301 49
30% 45 301 68
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 220 33
95% 40 220 46
90% 40 220 50
70% 40 220 61
50% 46 304 36
40% 46 304 47
30% 46 306 65
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 41 225 24
95% 47 231 24
90% 47 231 29
70% 47 231 41
50% 47 231 83
40% 47 231 105
30% 53 270 79
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 41 224 26
95% 41 225 40
90% 41 225 44
70% 41 225 55
50% 46 268 51
40% 46 269 62
30% 46 269 81
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 41 220 31
95% 41 220 44
90% 41 224 45
70% 41 224 56
50% 48 306 34
40% 49 308 44
30% 55 365 40
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 130 75
95% 40 220 48
90% 40 220 52
70% 40 220 63
50% 45 300 43
40% 45 300 52
30% 50 356 48
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.