Sequence Similarity Clusters for the Entities in PDB 4JI3

Entity #1 | Chains: A
16S rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 53 252 35
95 % 53 253 48
90 % 53 253 53
70 % 53 253 63
50 % 65 348 28
40 % 65 348 38
30 % 70 420 36
Entity #11 | Chains: K
RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 53 254 33
95 % 53 254 44
90 % 53 254 49
70 % 53 254 58
50 % 59 342 36
40 % 66 421 22
30 % 66 422 35
Entity #12 | Chains: L
RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 20164
95 % 53 261 35
90 % 53 261 39
70 % 59 353 23
50 % 59 354 27
40 % 59 354 37
30 % 59 354 56
Entity #13 | Chains: M
RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 53 255 30
95 % 53 255 41
90 % 53 255 46
70 % 53 255 55
50 % 59 347 33
40 % 59 347 45
30 % 64 421 41
Entity #14 | Chains: N
RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 53 253 34
95 % 53 253 49
90 % 53 253 54
70 % 53 254 61
50 % 53 254 86
40 % 53 254 106
30 % 53 254 119
Entity #15 | Chains: O
RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 53 257 27
95 % 55 262 34
90 % 55 262 38
70 % 55 262 49
50 % 64 355 26
40 % 64 356 36
30 % 64 356 55
Entity #16 | Chains: P
RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 53 249 36
95 % 53 254 46
90 % 53 254 51
70 % 53 254 60
50 % 53 254 85
40 % 53 255 105
30 % 59 345 63
Entity #17 | Chains: Q
RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 45 161 57
95 % 53 248 50
90 % 53 252 55
70 % 53 252 64
50 % 53 252 88
40 % 53 252 108
30 % 53 252 121
Entity #18 | Chains: R
RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 46 168 56
95 % 47 219 63
90 % 47 219 68
70 % 47 219 78
50 % 47 219 108
40 % 47 219 129
30 % 47 219 142
Entity #19 | Chains: S
RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 54 257 26
95 % 54 257 37
90 % 54 257 43
70 % 54 257 52
50 % 60 345 31
40 % 60 345 42
30 % 60 345 60
Entity #2 | Chains: B
RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 53 254 28
95 % 53 255 38
90 % 53 255 44
70 % 53 255 53
50 % 59 341 35
40 % 59 342 47
30 % 59 342 62
Entity #20 | Chains: T
RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 52 202 47
95 % 53 253 47
90 % 53 253 52
70 % 53 253 62
50 % 53 253 87
40 % 53 253 107
30 % 53 253 120
Entity #21 | Chains: U
RIBOSOMAL PROTEIN THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 53 244 38
95 % 53 244 54
90 % 53 244 57
70 % 53 244 68
50 % 53 244 92
40 % 53 244 114
30 % 53 244 128
Entity #3 | Chains: C
RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 218 44
95 % 47 218 64
90 % 47 218 69
70 % 47 218 79
50 % 49 269 79
40 % 49 269 97
30 % 49 269 112
Entity #4 | Chains: D
RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 53 247 37
95 % 53 255 39
90 % 53 255 45
70 % 53 255 54
50 % 59 342 34
40 % 59 343 44
30 % 59 343 61
Entity #5 | Chains: E
RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 53 254 32
95 % 53 254 43
90 % 53 254 48
70 % 53 254 57
50 % 60 346 30
40 % 60 346 41
30 % 60 348 57
Entity #6 | Chains: F
RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 54 259 24
95 % 60 265 33
90 % 60 265 36
70 % 60 265 44
50 % 60 265 82
40 % 60 265 100
30 % 66 304 78
Entity #7 | Chains: G
RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 54 258 25
95 % 54 259 36
90 % 54 259 41
70 % 54 259 50
50 % 59 304 51
40 % 59 305 63
30 % 59 305 87
Entity #8 | Chains: H
RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 54 254 29
95 % 54 254 40
90 % 54 258 42
70 % 54 258 51
50 % 62 348 29
40 % 63 350 39
30 % 69 425 33
Entity #9 | Chains: I
RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 49 163 72
95 % 53 254 45
90 % 53 254 50
70 % 53 254 59
50 % 59 342 37
40 % 59 342 48
30 % 64 416 42

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.