Sequence Similarity Clusters for the Entities in PDB 4JI3

Entity #1 | Chains: A
16S rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 53 253 35
95 % 53 254 48
90 % 53 254 53
70 % 53 254 63
50 % 71 359 28
40 % 71 359 38
30 % 76 432 35
Entity #11 | Chains: K
RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 53 255 33
95 % 53 255 43
90 % 53 255 48
70 % 53 255 57
50 % 65 353 35
40 % 72 434 20
30 % 72 435 33
Entity #12 | Chains: L
RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 20364
95 % 53 262 35
90 % 53 262 40
70 % 65 364 22
50 % 65 365 27
40 % 65 365 37
30 % 65 365 56
Entity #13 | Chains: M
RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 53 256 31
95 % 53 256 41
90 % 53 256 46
70 % 53 256 55
50 % 65 358 32
40 % 65 358 43
30 % 70 433 38
Entity #14 | Chains: N
RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 53 254 34
95 % 53 254 49
90 % 53 254 54
70 % 53 255 60
50 % 53 255 86
40 % 53 255 107
30 % 53 255 120
Entity #15 | Chains: O
RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 53 258 27
95 % 55 263 34
90 % 55 263 39
70 % 55 263 49
50 % 70 366 26
40 % 70 367 36
30 % 70 367 55
Entity #16 | Chains: P
RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 53 250 36
95 % 53 255 45
90 % 53 255 50
70 % 53 255 59
50 % 53 255 85
40 % 53 256 106
30 % 65 356 61
Entity #17 | Chains: Q
RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 45 162 57
95 % 53 249 51
90 % 53 253 55
70 % 53 253 64
50 % 53 253 88
40 % 53 253 109
30 % 53 253 123
Entity #18 | Chains: R
RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 46 169 56
95 % 47 220 63
90 % 47 220 68
70 % 47 220 78
50 % 47 220 108
40 % 47 220 131
30 % 47 220 142
Entity #19 | Chains: S
RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 54 258 26
95 % 54 258 37
90 % 54 258 43
70 % 54 258 52
50 % 66 356 31
40 % 66 356 41
30 % 66 356 58
Entity #2 | Chains: B
RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 53 255 28
95 % 53 256 38
90 % 53 256 44
70 % 53 256 53
50 % 65 352 34
40 % 65 353 44
30 % 65 353 60
Entity #20 | Chains: T
RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 52 203 47
95 % 53 254 47
90 % 53 254 52
70 % 53 254 62
50 % 53 254 87
40 % 53 254 108
30 % 53 254 121
Entity #21 | Chains: U
RIBOSOMAL PROTEIN THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 53 245 38
95 % 53 245 53
90 % 53 245 58
70 % 53 245 68
50 % 53 245 93
40 % 53 245 117
30 % 53 245 131
Entity #3 | Chains: C
RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 219 44
95 % 47 219 64
90 % 47 219 69
70 % 47 219 79
50 % 49 273 78
40 % 49 273 100
30 % 49 273 112
Entity #4 | Chains: D
RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 53 248 37
95 % 53 256 39
90 % 53 256 45
70 % 53 256 54
50 % 65 353 33
40 % 65 354 42
30 % 65 354 59
Entity #5 | Chains: E
RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 53 255 32
95 % 53 255 42
90 % 53 255 47
70 % 53 255 56
50 % 66 357 30
40 % 66 357 40
30 % 66 359 57
Entity #6 | Chains: F
RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 54 260 24
95 % 60 266 33
90 % 60 266 36
70 % 60 266 45
50 % 60 266 83
40 % 60 266 102
30 % 72 312 77
Entity #7 | Chains: G
RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 54 259 25
95 % 54 260 36
90 % 54 260 41
70 % 54 260 50
50 % 65 312 52
40 % 65 313 64
30 % 65 313 85
Entity #8 | Chains: H
RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 54 255 30
95 % 54 255 40
90 % 54 259 42
70 % 54 259 51
50 % 68 359 29
40 % 69 361 39
30 % 75 438 32
Entity #9 | Chains: I
RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 49 164 72
95 % 53 255 44
90 % 53 255 49
70 % 53 255 58
50 % 65 353 36
40 % 65 353 45
30 % 70 429 39

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.