Sequence Similarity Clusters for the Entities in PDB 4JI2

Entity #1 | Chains: A
16S rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 89 267 37
95 % 89 268 52
90 % 89 268 55
70 % 89 268 67
50 % 115 397 25
40 % 115 397 36
30 % 128 496 31
Entity #11 | Chains: K
RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 89 269 35
95 % 89 269 48
90 % 89 269 51
70 % 89 269 62
50 % 109 391 33
40 % 124 493 18
30 % 124 493 33
Entity #12 | Chains: L
RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 21661
95 % 89 276 37
90 % 89 276 41
70 % 109 404 20
50 % 109 409 23
40 % 109 409 33
30 % 109 409 55
Entity #13 | Chains: M
RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 89 270 33
95 % 89 270 45
90 % 89 270 49
70 % 89 270 59
50 % 110 396 31
40 % 110 396 44
30 % 123 497 34
Entity #14 | Chains: N
RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 89 268 36
95 % 89 268 53
90 % 89 268 56
70 % 89 270 60
50 % 89 270 89
40 % 89 270 111
30 % 89 270 123
Entity #15 | Chains: O
RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 89 272 29
95 % 93 277 36
90 % 93 277 40
70 % 93 277 51
50 % 116 404 24
40 % 116 407 34
30 % 116 407 56
Entity #16 | Chains: P
RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 89 264 38
95 % 89 269 50
90 % 89 269 53
70 % 89 269 64
50 % 89 271 88
40 % 89 271 109
30 % 110 392 64
Entity #17 | Chains: Q
RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 74 176 56
95 % 89 263 54
90 % 89 267 57
70 % 89 267 68
50 % 89 267 93
40 % 89 267 114
30 % 89 267 127
Entity #18 | Chains: R
RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 77 183 54
95 % 83 234 62
90 % 83 234 66
70 % 83 234 78
50 % 83 234 107
40 % 83 234 132
30 % 83 234 141
Entity #19 | Chains: S
RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 90 272 28
95 % 90 272 41
90 % 90 272 46
70 % 90 272 56
50 % 110 396 27
40 % 110 399 38
30 % 110 399 57
Entity #2 | Chains: B
RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 89 269 31
95 % 89 270 42
90 % 89 270 47
70 % 89 270 57
50 % 109 390 32
40 % 109 393 43
30 % 109 393 61
Entity #20 | Chains: T
RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 83 217 49
95 % 89 268 51
90 % 89 268 54
70 % 89 268 66
50 % 89 268 91
40 % 89 268 112
30 % 89 268 124
Entity #21 | Chains: U
RIBOSOMAL PROTEIN THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 89 259 42
95 % 89 259 57
90 % 89 259 61
70 % 89 259 73
50 % 89 259 96
40 % 89 259 119
30 % 89 259 130
Entity #3 | Chains: C
RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 82 233 45
95 % 82 233 63
90 % 82 233 67
70 % 82 233 79
50 % 85 304 81
40 % 85 304 100
30 % 85 304 113
Entity #4 | Chains: D
RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 89 262 39
95 % 89 270 43
90 % 89 270 48
70 % 89 270 58
50 % 109 392 30
40 % 109 395 41
30 % 109 395 60
Entity #5 | Chains: E
RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 89 269 34
95 % 89 269 47
90 % 89 269 50
70 % 89 269 61
50 % 110 396 29
40 % 110 396 42
30 % 110 398 59
Entity #6 | Chains: F
RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 91 274 26
95 % 97 280 34
90 % 97 280 39
70 % 97 280 50
50 % 97 280 86
40 % 97 280 105
30 % 116 334 90
Entity #7 | Chains: G
RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 90 273 27
95 % 90 274 39
90 % 90 274 43
70 % 90 274 54
50 % 109 338 68
40 % 109 341 78
30 % 109 341 91
Entity #8 | Chains: H
RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 90 269 32
95 % 90 269 44
90 % 90 273 44
70 % 90 273 55
50 % 112 397 26
40 % 113 401 35
30 % 127 506 29
Entity #9 | Chains: I
RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 80 178 66
95 % 89 269 49
90 % 89 269 52
70 % 89 269 63
50 % 109 391 34
40 % 109 391 45
30 % 122 494 35

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.