Sequence Similarity Clusters for the Entities in PDB 4JI2

Entity #1 | Chains: A
16S rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 88 253 36
95 % 88 254 49
90 % 88 254 54
70 % 88 254 64
50 % 114 361 28
40 % 114 361 38
30 % 127 434 36
Entity #11 | Chains: K
RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 88 255 34
95 % 88 255 45
90 % 88 255 50
70 % 88 255 59
50 % 108 355 35
40 % 123 436 20
30 % 123 437 34
Entity #12 | Chains: L
RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 20500
95 % 88 262 36
90 % 88 262 41
70 % 108 366 21
50 % 108 367 27
40 % 108 367 37
30 % 108 367 57
Entity #13 | Chains: M
RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 88 256 32
95 % 88 256 43
90 % 88 256 48
70 % 88 256 57
50 % 109 360 32
40 % 109 360 44
30 % 122 435 39
Entity #14 | Chains: N
RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 88 254 35
95 % 88 254 50
90 % 88 254 55
70 % 88 255 62
50 % 88 255 87
40 % 88 255 108
30 % 88 255 120
Entity #15 | Chains: O
RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 88 258 29
95 % 92 263 35
90 % 92 263 40
70 % 92 263 50
50 % 115 368 26
40 % 115 369 36
30 % 115 369 56
Entity #16 | Chains: P
RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 88 250 37
95 % 88 255 47
90 % 88 255 52
70 % 88 255 61
50 % 88 255 86
40 % 88 256 107
30 % 109 358 62
Entity #17 | Chains: Q
RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 73 162 59
95 % 88 249 52
90 % 88 253 56
70 % 88 253 65
50 % 88 253 89
40 % 88 253 111
30 % 88 253 124
Entity #18 | Chains: R
RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 76 169 57
95 % 82 220 64
90 % 82 220 69
70 % 82 220 79
50 % 82 220 110
40 % 82 220 132
30 % 82 220 142
Entity #19 | Chains: S
RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 89 258 28
95 % 89 258 38
90 % 89 258 44
70 % 89 258 53
50 % 109 358 31
40 % 109 358 41
30 % 109 358 59
Entity #2 | Chains: B
RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 88 255 30
95 % 88 256 40
90 % 88 256 46
70 % 88 256 55
50 % 108 354 34
40 % 108 355 45
30 % 108 355 61
Entity #20 | Chains: T
RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 82 203 48
95 % 88 254 48
90 % 88 254 53
70 % 88 254 63
50 % 88 254 88
40 % 88 254 109
30 % 88 254 121
Entity #21 | Chains: U
RIBOSOMAL PROTEIN THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 88 245 39
95 % 88 245 55
90 % 88 245 60
70 % 88 245 70
50 % 88 245 94
40 % 88 245 118
30 % 88 245 131
Entity #3 | Chains: C
RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 81 219 45
95 % 81 219 65
90 % 81 219 70
70 % 81 219 80
50 % 84 275 80
40 % 84 275 100
30 % 84 275 112
Entity #4 | Chains: D
RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 88 248 38
95 % 88 256 41
90 % 88 256 47
70 % 88 256 56
50 % 108 355 33
40 % 108 356 43
30 % 108 356 60
Entity #5 | Chains: E
RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 88 255 33
95 % 88 255 44
90 % 88 255 49
70 % 88 255 58
50 % 109 359 30
40 % 109 359 40
30 % 109 361 58
Entity #6 | Chains: F
RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 90 260 25
95 % 96 266 34
90 % 96 266 37
70 % 96 266 46
50 % 96 266 84
40 % 96 266 103
30 % 115 312 79
Entity #7 | Chains: G
RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 89 259 27
95 % 89 260 37
90 % 89 260 42
70 % 89 260 51
50 % 108 312 54
40 % 108 313 68
30 % 108 313 88
Entity #8 | Chains: H
RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 89 255 31
95 % 89 255 42
90 % 89 259 43
70 % 89 259 52
50 % 111 361 29
40 % 112 363 39
30 % 126 440 33
Entity #9 | Chains: I
RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 79 164 73
95 % 88 255 46
90 % 88 255 51
70 % 88 255 60
50 % 108 355 36
40 % 108 355 46
30 % 121 431 40

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.