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Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Sequence Clustering and Redundancy Reduction Results
4JI2
Sequence Clusters for the Sequence Entities in PDB 4JI2
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 56 197 29
95% 56 198 45
90% 56 198 47
70% 56 198 60
50% 74 283 35
40% 74 283 45
30% 87 334 46
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 56 199 26
95% 56 199 40
90% 56 199 42
70% 56 199 54
50% 68 277 41
40% 83 335 35
30% 83 336 45
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 4 18004
95% 56 206 31
90% 56 206 33
70% 68 288 24
50% 68 289 34
40% 68 289 44
30% 68 289 69
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 56 200 23
95% 56 200 38
90% 56 200 40
70% 56 200 51
50% 69 282 39
40% 69 282 50
30% 82 335 49
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 56 198 27
95% 56 198 46
90% 56 198 48
70% 56 199 57
50% 56 199 90
40% 56 199 113
30% 56 199 137
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 56 202 21
95% 60 207 30
90% 60 207 32
70% 60 207 43
50% 75 290 33
40% 75 291 43
30% 75 291 67
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 56 194 30
95% 56 199 42
90% 56 199 44
70% 56 199 56
50% 56 199 89
40% 56 200 112
30% 69 280 76
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 41 113 66
95% 56 193 50
90% 56 197 49
70% 56 197 61
50% 56 197 93
40% 56 197 116
30% 56 197 139
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 48 125 59
95% 54 174 71
90% 54 174 75
70% 54 174 89
50% 54 174 130
40% 54 174 148
30% 54 174 164
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 57 202 20
95% 57 202 33
90% 57 202 36
70% 57 202 47
50% 69 280 38
40% 69 280 49
30% 69 280 73
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 56 199 24
95% 56 200 35
90% 56 200 38
70% 56 200 48
50% 68 276 43
40% 68 277 52
30% 68 277 75
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 50 149 54
95% 56 198 44
90% 56 198 46
70% 56 198 59
50% 56 198 92
40% 56 198 114
30% 56 198 138
Entity #21: Chains: U - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 56 189 32
95% 56 189 52
90% 56 189 55
70% 56 189 67
50% 56 189 112
40% 56 189 135
30% 56 189 153
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 53 173 48
95% 53 173 72
90% 53 173 76
70% 53 173 91
50% 55 214 77
40% 55 214 102
30% 55 214 123
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 56 192 31
95% 56 200 36
90% 56 200 39
70% 56 200 49
50% 68 277 40
40% 68 278 51
30% 68 278 74
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 56 199 25
95% 56 199 39
90% 56 199 41
70% 56 199 52
50% 69 281 37
40% 69 281 48
30% 69 283 72
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 58 204 18
95% 64 210 29
90% 64 210 31
70% 64 210 42
50% 64 210 83
40% 64 210 107
30% 76 249 87
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 57 203 19
95% 57 204 32
90% 57 204 34
70% 57 204 44
50% 69 247 55
40% 69 248 70
30% 69 248 94
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 57 199 22
95% 57 199 37
90% 57 203 35
70% 57 203 45
50% 71 283 36
40% 72 285 46
30% 86 339 44
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 47 109 86
95% 56 199 41
90% 56 199 43
70% 56 199 55
50% 68 277 42
40% 68 277 54
30% 81 330 50
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.