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Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Sequence Clustering and Redundancy Reduction Results
4JI1
Sequence Clusters for the Sequence Entities in PDB 4JI1
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 265 27
95% 16 267 47
90% 16 267 49
70% 16 267 59
50% 22 382 34
40% 22 382 45
30% 22 387 65
Entity #11: Chains: K - RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 268 25
95% 16 268 43
90% 16 268 45
70% 16 268 55
50% 16 376 41
40% 18 436 38
30% 18 436 51
Entity #12: Chains: L - RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 4 17192
95% 16 275 35
90% 16 275 37
70% 16 388 24
50% 16 388 33
40% 16 388 44
30% 16 388 68
Entity #13: Chains: M - RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 269 22
95% 16 269 41
90% 16 269 43
70% 16 269 53
50% 16 378 38
40% 16 378 51
30% 16 434 54
Entity #14: Chains: N - RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 267 26
95% 16 267 48
90% 16 267 50
70% 16 267 60
50% 16 267 93
40% 16 267 119
30% 16 267 140
Entity #15: Chains: O - RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 271 20
95% 16 276 32
90% 16 276 34
70% 16 276 47
50% 19 389 32
40% 19 389 43
30% 19 389 67
Entity #16: Chains: P - RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 263 28
95% 16 268 45
90% 16 268 47
70% 16 268 57
50% 16 268 91
40% 16 268 117
30% 16 376 76
Entity #17: Chains: Q - RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 170 53
95% 16 262 49
90% 16 266 51
70% 16 266 61
50% 16 266 94
40% 16 266 120
30% 16 266 142
Entity #18: Chains: R - RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 183 47
95% 16 232 61
90% 16 232 64
70% 16 232 78
50% 16 232 113
40% 16 232 138
30% 16 232 159
Entity #19: Chains: S - RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 234 37
95% 17 234 59
90% 17 234 63
70% 17 234 77
50% 17 379 37
40% 17 379 49
30% 17 379 72
Entity #2: Chains: B - RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 268 23
95% 16 269 38
90% 16 269 41
70% 16 269 51
50% 16 269 90
40% 16 376 53
30% 16 376 75
Entity #20: Chains: T - RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 206 42
95% 16 267 46
90% 16 267 48
70% 16 267 58
50% 16 267 92
40% 16 267 118
30% 16 267 139
Entity #21: Chains: U - RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 249 33
95% 16 249 52
90% 16 249 55
70% 16 249 66
50% 16 249 103
40% 16 249 130
30% 16 249 150
Entity #3: Chains: C - RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 230 38
95% 16 230 62
90% 16 230 65
70% 16 230 79
50% 16 293 73
40% 16 293 98
30% 16 293 119
Entity #4: Chains: D - RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 261 29
95% 16 269 39
90% 16 269 42
70% 16 269 52
50% 16 376 39
40% 16 377 52
30% 16 377 74
Entity #5: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 268 24
95% 16 268 42
90% 16 268 44
70% 16 268 54
50% 16 380 36
40% 16 380 48
30% 16 382 71
Entity #6: Chains: F - RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 273 18
95% 23 279 29
90% 23 279 30
70% 23 279 44
50% 23 279 82
40% 23 279 106
30% 25 326 94
Entity #7: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 272 19
95% 17 273 36
90% 17 273 38
70% 17 273 49
50% 18 321 56
40% 18 322 73
30% 18 322 96
Entity #8: Chains: H - RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 268 21
95% 17 268 40
90% 17 272 39
70% 17 272 50
50% 18 382 35
40% 19 384 46
30% 20 441 47
Entity #9: Chains: I - RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 155 76
95% 16 268 44
90% 16 268 46
70% 16 268 56
50% 16 376 40
40% 16 376 54
30% 16 432 56
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.