Sequence Similarity Clusters for the Entities in PDB 4JI1

Entity #1 | Chains: A
16S rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 248 35
95 % 17 249 48
90 % 17 249 53
70 % 17 249 63
50 % 25 344 28
40 % 25 344 38
30 % 25 414 38
Entity #11 | Chains: K
RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 250 33
95 % 17 250 44
90 % 17 250 49
70 % 17 250 58
50 % 19 338 37
40 % 21 415 23
30 % 21 416 37
Entity #12 | Chains: L
RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 20009
95 % 17 257 35
90 % 17 257 40
70 % 19 349 23
50 % 19 350 27
40 % 19 350 37
30 % 19 350 56
Entity #13 | Chains: M
RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 251 31
95 % 17 251 42
90 % 17 251 47
70 % 17 251 56
50 % 19 343 34
40 % 19 343 46
30 % 19 415 44
Entity #14 | Chains: N
RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 249 34
95 % 17 249 49
90 % 17 249 54
70 % 17 250 61
50 % 17 250 86
40 % 17 250 106
30 % 17 250 120
Entity #15 | Chains: O
RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 253 28
95 % 17 258 34
90 % 17 258 39
70 % 17 258 49
50 % 22 351 26
40 % 22 352 36
30 % 22 352 55
Entity #16 | Chains: P
RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 245 36
95 % 17 250 46
90 % 17 250 51
70 % 17 250 60
50 % 17 250 85
40 % 17 251 105
30 % 19 341 62
Entity #17 | Chains: Q
RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 157 59
95 % 17 244 50
90 % 17 248 55
70 % 17 248 64
50 % 17 248 89
40 % 17 248 110
30 % 17 248 122
Entity #18 | Chains: R
RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 164 56
95 % 15 215 63
90 % 15 215 66
70 % 15 215 78
50 % 15 215 109
40 % 15 215 129
30 % 15 215 142
Entity #19 | Chains: S
RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 253 27
95 % 18 253 37
90 % 18 253 43
70 % 18 253 52
50 % 20 341 33
40 % 20 341 44
30 % 20 341 59
Entity #2 | Chains: B
RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 250 29
95 % 17 251 39
90 % 17 251 45
70 % 17 251 54
50 % 19 337 36
40 % 19 338 47
30 % 19 338 61
Entity #20 | Chains: T
RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 198 47
95 % 17 249 47
90 % 17 249 52
70 % 17 249 62
50 % 17 249 88
40 % 17 249 108
30 % 17 249 121
Entity #21 | Chains: U
RIBOSOMAL PROTEIN THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 240 40
95 % 17 240 56
90 % 17 240 60
70 % 17 240 69
50 % 17 240 93
40 % 17 240 116
30 % 17 240 130
Entity #3 | Chains: C
RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 214 43
95 % 15 214 64
90 % 15 214 67
70 % 15 214 79
50 % 16 265 78
40 % 16 265 99
30 % 16 265 113
Entity #4 | Chains: D
RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 243 37
95 % 17 251 40
90 % 17 251 46
70 % 17 251 55
50 % 19 338 35
40 % 19 339 45
30 % 19 339 60
Entity #5 | Chains: E
RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 250 32
95 % 17 250 43
90 % 17 250 48
70 % 17 250 57
50 % 19 342 32
40 % 19 342 43
30 % 19 344 58
Entity #6 | Chains: F
RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 255 25
95 % 24 261 33
90 % 24 261 37
70 % 24 261 48
50 % 24 261 84
40 % 24 261 102
30 % 27 300 79
Entity #7 | Chains: G
RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 254 26
95 % 18 255 36
90 % 18 255 41
70 % 18 255 50
50 % 20 300 51
40 % 20 301 64
30 % 20 301 89
Entity #8 | Chains: H
RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 250 30
95 % 18 250 41
90 % 18 254 42
70 % 18 254 51
50 % 21 344 30
40 % 22 346 40
30 % 23 419 35
Entity #9 | Chains: I
RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 159 72
95 % 17 250 45
90 % 17 250 50
70 % 17 250 59
50 % 19 338 38
40 % 19 338 48
30 % 19 410 45

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.