Sequence Similarity Clusters for the Entities in PDB 4JI0

Entity #1 | Chains: A
16S rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 86 267 37
95 % 86 268 51
90 % 86 268 54
70 % 86 268 65
50 % 111 395 25
40 % 111 395 37
30 % 124 494 30
Entity #11 | Chains: K
ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 86 269 35
95 % 86 269 47
90 % 86 269 50
70 % 86 269 60
50 % 105 389 34
40 % 120 491 18
30 % 120 491 31
Entity #12 | Chains: L
ribosomal protein S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 21521
95 % 86 276 36
90 % 86 276 40
70 % 105 402 20
50 % 105 407 23
40 % 105 407 33
30 % 105 407 54
Entity #13 | Chains: M
ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 86 270 33
95 % 86 270 44
90 % 86 270 48
70 % 86 270 57
50 % 106 394 31
40 % 106 394 43
30 % 119 495 33
Entity #14 | Chains: N
ribosomal protein S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 86 268 36
95 % 86 268 52
90 % 86 268 55
70 % 86 270 58
50 % 86 270 87
40 % 86 270 108
30 % 86 270 120
Entity #15 | Chains: O
ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 86 272 29
95 % 90 277 35
90 % 90 277 39
70 % 90 277 50
50 % 112 402 24
40 % 112 405 34
30 % 112 405 55
Entity #16 | Chains: P
ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 86 264 38
95 % 86 269 49
90 % 86 269 52
70 % 86 269 62
50 % 86 271 86
40 % 86 271 106
30 % 106 390 63
Entity #17 | Chains: Q
ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 71 176 55
95 % 86 263 53
90 % 86 267 56
70 % 86 267 66
50 % 86 267 90
40 % 86 267 111
30 % 86 267 123
Entity #18 | Chains: R
ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 75 183 53
95 % 81 234 62
90 % 81 234 66
70 % 81 234 77
50 % 81 234 103
40 % 81 234 129
30 % 81 234 140
Entity #19 | Chains: S
ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 87 272 28
95 % 87 272 40
90 % 87 272 45
70 % 87 272 54
50 % 106 394 28
40 % 106 397 39
30 % 106 397 56
Entity #2 | Chains: B
ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 86 269 31
95 % 86 270 41
90 % 86 270 46
70 % 86 270 55
50 % 105 388 33
40 % 105 391 42
30 % 105 391 61
Entity #20 | Chains: T
ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 80 217 49
95 % 86 268 50
90 % 86 268 53
70 % 86 268 64
50 % 86 268 89
40 % 86 268 110
30 % 86 268 122
Entity #21 | Chains: U
ribosomal protein THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 86 259 42
95 % 86 259 56
90 % 86 259 60
70 % 86 259 69
50 % 86 259 94
40 % 86 259 116
30 % 86 259 129
Entity #3 | Chains: C
ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 80 233 45
95 % 80 233 63
90 % 80 233 67
70 % 80 233 78
50 % 83 302 80
40 % 83 302 97
30 % 83 302 113
Entity #4 | Chains: D
ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 86 262 39
95 % 86 270 42
90 % 86 270 47
70 % 86 270 56
50 % 105 390 30
40 % 105 393 40
30 % 105 393 59
Entity #5 | Chains: E
ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 86 269 34
95 % 86 269 46
90 % 86 269 49
70 % 86 269 59
50 % 106 394 29
40 % 106 394 41
30 % 106 396 58
Entity #6 | Chains: F
ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 88 274 26
95 % 94 280 33
90 % 94 280 38
70 % 94 280 49
50 % 94 280 84
40 % 94 280 103
30 % 112 334 88
Entity #7 | Chains: G
ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 87 273 27
95 % 87 274 38
90 % 87 274 42
70 % 87 274 52
50 % 105 336 65
40 % 105 339 76
30 % 105 339 91
Entity #8 | Chains: H
ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 87 269 32
95 % 87 269 43
90 % 87 273 43
70 % 87 273 53
50 % 108 395 26
40 % 109 399 35
30 % 123 504 28
Entity #9 | Chains: I
ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 77 178 65
95 % 86 269 48
90 % 86 269 51
70 % 86 269 61
50 % 105 389 35
40 % 105 389 45
30 % 118 492 34

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.