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Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Sequence Clustering and Redundancy Reduction Results
4JI0
Sequence Clusters for the Sequence Entities in PDB 4JI0
Entity #1: Chains: A - 16S rRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - ribosomal protein S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 54 257 29
95% 54 259 47
90% 54 259 51
70% 54 259 61
50% 80 374 34
40% 80 374 46
30% 80 379 66
Entity #11: Chains: K - ribosomal protein S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 54 260 26
95% 54 260 43
90% 54 260 46
70% 54 260 57
50% 74 368 42
40% 78 408 40
30% 78 408 53
Entity #12: Chains: L - ribosomal protein S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 4 17085
95% 54 267 36
90% 54 267 38
70% 74 380 24
50% 74 380 33
40% 74 380 45
30% 74 380 69
Entity #13: Chains: M - ribosomal protein S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 54 261 22
95% 54 261 41
90% 54 261 43
70% 54 261 55
50% 74 370 39
40% 74 370 53
30% 76 406 57
Entity #14: Chains: N - ribosomal protein S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 54 259 27
95% 54 259 48
90% 54 259 52
70% 54 259 62
50% 54 259 97
40% 54 259 123
30% 54 259 141
Entity #15: Chains: O - ribosomal protein S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 54 263 20
95% 58 268 35
90% 58 268 37
70% 58 268 48
50% 81 381 32
40% 81 381 43
30% 81 381 68
Entity #16: Chains: P - ribosomal protein S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 54 255 30
95% 54 260 45
90% 54 260 48
70% 54 260 59
50% 54 260 94
40% 54 260 120
30% 74 368 78
Entity #17: Chains: Q - ribosomal protein S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 39 162 57
95% 54 254 50
90% 54 258 53
70% 54 258 63
50% 54 258 99
40% 54 258 124
30% 54 258 142
Entity #18: Chains: R - ribosomal protein S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 46 175 50
95% 52 224 63
90% 52 224 67
70% 52 224 81
50% 52 224 115
40% 52 224 141
30% 52 224 162
Entity #19: Chains: S - ribosomal protein S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 52 226 37
95% 52 226 62
90% 52 226 65
70% 52 226 80
50% 75 371 38
40% 75 371 51
30% 75 371 75
Entity #2: Chains: B - ribosomal protein S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 54 260 24
95% 54 261 38
90% 54 261 41
70% 54 261 52
50% 54 261 92
40% 74 368 55
30% 74 368 77
Entity #20: Chains: T - ribosomal protein S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 48 198 43
95% 54 259 46
90% 54 259 50
70% 54 259 60
50% 54 259 96
40% 54 259 122
30% 54 259 140
Entity #21: Chains: U - ribosomal protein THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 54 241 34
95% 54 241 55
90% 54 241 58
70% 54 241 69
50% 54 241 107
40% 54 241 130
30% 54 241 151
Entity #3: Chains: C - ribosomal protein S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 51 222 39
95% 51 222 65
90% 51 222 69
70% 51 222 82
50% 59 285 76
40% 59 285 100
30% 59 285 124
Entity #4: Chains: D - ribosomal protein S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 54 253 31
95% 54 261 39
90% 54 261 42
70% 54 261 53
50% 74 368 40
40% 74 369 54
30% 74 369 76
Entity #5: Chains: E - ribosomal protein S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 54 260 25
95% 54 260 42
90% 54 260 44
70% 54 260 56
50% 75 372 37
40% 75 372 50
30% 75 374 72
Entity #6: Chains: F - ribosomal protein S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 56 265 18
95% 62 271 33
90% 62 271 35
70% 62 271 47
50% 62 271 87
40% 62 271 112
30% 76 318 94
Entity #7: Chains: G - ribosomal protein S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 55 264 19
95% 55 265 37
90% 55 265 39
70% 55 265 49
50% 68 313 56
40% 68 314 72
30% 68 314 96
Entity #8: Chains: H - ribosomal protein S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 55 260 21
95% 55 260 40
90% 55 264 40
70% 55 264 50
50% 77 374 35
40% 78 376 47
30% 81 413 52
Entity #9: Chains: I - ribosomal protein S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 45 147 79
95% 54 260 44
90% 54 260 47
70% 54 260 58
50% 74 368 41
40% 74 368 56
30% 76 404 58
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.