Sequence Similarity Clusters for the Entities in PDB 4JI0

Entity #1 | Chains: A
16S rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 88 269 39
95 % 88 270 53
90 % 88 270 58
70 % 88 270 68
50 % 113 421 26
40 % 113 421 38
30 % 127 528 32
Entity #11 | Chains: K
ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 88 271 35
95 % 88 271 49
90 % 88 271 54
70 % 88 271 64
50 % 107 415 32
40 % 123 537 19
30 % 123 537 31
Entity #12 | Chains: L
ribosomal protein S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 22789
95 % 88 278 39
90 % 88 278 44
70 % 107 422 19
50 % 107 432 24
40 % 107 432 35
30 % 107 432 55
Entity #13 | Chains: M
ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 88 272 33
95 % 88 272 46
90 % 88 272 51
70 % 88 272 62
50 % 108 419 31
40 % 108 419 43
30 % 122 527 36
Entity #14 | Chains: N
ribosomal protein S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 88 270 36
95 % 88 270 54
90 % 88 270 59
70 % 88 279 54
50 % 88 279 90
40 % 88 279 113
30 % 88 279 123
Entity #15 | Chains: O
ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 88 274 30
95 % 92 279 38
90 % 92 279 43
70 % 92 279 53
50 % 114 428 25
40 % 114 433 34
30 % 114 433 54
Entity #16 | Chains: P
ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 88 266 41
95 % 88 271 51
90 % 88 271 56
70 % 88 271 66
50 % 88 278 91
40 % 88 278 114
30 % 108 413 63
Entity #17 | Chains: Q
ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 73 178 58
95 % 88 265 56
90 % 88 269 60
70 % 88 269 69
50 % 88 269 94
40 % 88 269 117
30 % 88 269 128
Entity #18 | Chains: R
ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 77 185 56
95 % 83 236 65
90 % 83 236 69
70 % 83 236 81
50 % 83 236 111
40 % 83 236 135
30 % 83 236 144
Entity #19 | Chains: S
ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 89 274 29
95 % 89 274 42
90 % 89 274 48
70 % 89 274 58
50 % 108 421 28
40 % 108 424 40
30 % 108 424 57
Entity #2 | Chains: B
ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 88 271 31
95 % 88 272 43
90 % 88 272 49
70 % 88 272 59
50 % 107 409 36
40 % 107 414 45
30 % 107 414 62
Entity #20 | Chains: T
ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 82 219 50
95 % 88 270 52
90 % 88 270 57
70 % 88 270 67
50 % 88 270 93
40 % 88 270 116
30 % 88 270 127
Entity #21 | Chains: U
ribosomal protein THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 88 261 43
95 % 88 261 59
90 % 88 261 63
70 % 88 261 74
50 % 88 261 98
40 % 88 261 121
30 % 88 261 133
Entity #3 | Chains: C
ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 82 235 48
95 % 82 235 66
90 % 82 235 70
70 % 82 235 82
50 % 85 309 84
40 % 85 309 103
30 % 85 309 116
Entity #4 | Chains: D
ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 88 264 42
95 % 88 272 44
90 % 88 272 50
70 % 88 272 60
50 % 107 416 29
40 % 107 421 41
30 % 107 421 58
Entity #5 | Chains: E
ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 88 271 34
95 % 88 271 48
90 % 88 271 53
70 % 88 271 63
50 % 108 417 30
40 % 108 417 42
30 % 108 419 60
Entity #6 | Chains: F
ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 90 276 27
95 % 96 282 37
90 % 96 282 42
70 % 96 282 51
50 % 96 282 88
40 % 96 282 110
30 % 114 355 95
Entity #7 | Chains: G
ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 89 275 28
95 % 89 276 41
90 % 89 276 46
70 % 89 276 56
50 % 107 356 66
40 % 107 361 84
30 % 107 361 96
Entity #8 | Chains: H
ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 89 271 32
95 % 89 271 45
90 % 89 275 47
70 % 89 275 57
50 % 110 421 27
40 % 111 427 37
30 % 126 542 30
Entity #9 | Chains: I
ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 79 180 69
95 % 88 271 50
90 % 88 271 55
70 % 88 271 65
50 % 107 411 35
40 % 107 411 48
30 % 121 526 34

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.