Sequence Similarity Clusters for the Entities in PDB 4JI0

Entity #1 | Chains: A
16S rRNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
ribosomal protein S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 86 267 39
95 % 86 268 54
90 % 86 268 57
70 % 86 268 69
50 % 111 400 26
40 % 111 400 37
30 % 124 500 32
Entity #11 | Chains: K
ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 86 269 36
95 % 86 269 50
90 % 86 269 53
70 % 86 269 64
50 % 105 393 35
40 % 120 499 19
30 % 120 499 33
Entity #12 | Chains: L
ribosomal protein S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 21842
95 % 86 276 40
90 % 86 276 44
70 % 105 406 22
50 % 105 411 25
40 % 105 411 35
30 % 105 411 55
Entity #13 | Chains: M
ribosomal protein S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 86 270 34
95 % 86 270 47
90 % 86 270 51
70 % 86 270 61
50 % 106 398 33
40 % 106 398 46
30 % 119 500 36
Entity #14 | Chains: N
ribosomal protein S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 86 268 38
95 % 86 268 55
90 % 86 268 58
70 % 86 270 62
50 % 86 270 90
40 % 86 270 112
30 % 86 270 124
Entity #15 | Chains: O
ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 86 272 30
95 % 90 277 39
90 % 90 277 43
70 % 90 277 55
50 % 112 406 27
40 % 112 409 36
30 % 112 409 56
Entity #16 | Chains: P
ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 86 264 40
95 % 86 269 52
90 % 86 269 55
70 % 86 269 66
50 % 86 271 89
40 % 86 271 110
30 % 106 394 63
Entity #17 | Chains: Q
ribosomal protein S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 71 176 58
95 % 86 263 57
90 % 86 267 59
70 % 86 267 70
50 % 86 267 94
40 % 86 267 115
30 % 86 267 127
Entity #18 | Chains: R
ribosomal protein S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 75 183 56
95 % 81 234 64
90 % 81 234 68
70 % 81 234 80
50 % 81 234 108
40 % 81 234 133
30 % 81 234 142
Entity #19 | Chains: S
ribosomal protein S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 87 272 29
95 % 87 272 43
90 % 87 272 48
70 % 87 272 58
50 % 106 398 30
40 % 106 401 40
30 % 106 401 58
Entity #2 | Chains: B
ribosomal protein S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 86 269 32
95 % 86 270 44
90 % 86 270 49
70 % 86 270 59
50 % 105 392 34
40 % 105 395 45
30 % 105 395 62
Entity #20 | Chains: T
ribosomal protein S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 80 217 51
95 % 86 268 53
90 % 86 268 56
70 % 86 268 68
50 % 86 268 92
40 % 86 268 113
30 % 86 268 125
Entity #21 | Chains: U
ribosomal protein THX protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 86 259 43
95 % 86 259 59
90 % 86 259 63
70 % 86 259 75
50 % 86 259 97
40 % 86 259 120
30 % 86 259 130
Entity #3 | Chains: C
ribosomal protein S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 80 233 47
95 % 80 233 65
90 % 80 233 69
70 % 80 233 81
50 % 83 306 83
40 % 83 306 102
30 % 83 306 113
Entity #4 | Chains: D
ribosomal protein S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 86 262 41
95 % 86 270 45
90 % 86 270 50
70 % 86 270 60
50 % 105 394 32
40 % 105 397 42
30 % 105 397 61
Entity #5 | Chains: E
ribosomal protein S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 86 269 35
95 % 86 269 49
90 % 86 269 52
70 % 86 269 63
50 % 106 398 31
40 % 106 398 43
30 % 106 400 59
Entity #6 | Chains: F
ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 88 274 27
95 % 94 280 36
90 % 94 280 41
70 % 94 280 52
50 % 94 280 87
40 % 94 280 106
30 % 112 334 90
Entity #7 | Chains: G
ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 87 273 28
95 % 87 274 41
90 % 87 274 45
70 % 87 274 56
50 % 105 338 71
40 % 105 341 79
30 % 105 341 93
Entity #8 | Chains: H
ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 87 269 33
95 % 87 269 46
90 % 87 273 46
70 % 87 273 57
50 % 108 399 29
40 % 109 403 38
30 % 123 512 30
Entity #9 | Chains: I
ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 77 178 68
95 % 86 269 51
90 % 86 269 54
70 % 86 269 65
50 % 105 393 36
40 % 105 393 47
30 % 118 499 35

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.