Sequence Similarity Clusters for the Entities in PDB 4JGC

Entity #1 | Chains: A
G/T mismatch-specific thymine DNA glycosylase protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 11 5180
95 % 9 13 4012 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 9 13 4065
70 % 9 13 3993
50 % 9 13 3894
40 % 9 13 3700
30 % 9 13 3394
Entity #2 | Chains: C
oligonucleotide dna, length: 28 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: D
oligonucleotide containing 5-carboxylcytosine dna, length: 28 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures