Sequence Similarity Clusters for the Entities in PDB 4JGC

Entity #1 | Chains: A
G/T mismatch-specific thymine DNA glycosylase protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 60962
95 % 9 13 3726 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.7
PDBFlex
90 % 9 13 3773
70 % 9 13 3727
50 % 9 13 3636
40 % 9 13 3506
30 % 9 13 3273
Entity #2 | Chains: C
oligonucleotide dna, length: 28 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: D
oligonucleotide containing 5-carboxylcytosine dna, length: 28 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.