Sequence Similarity Clusters for the Entities in PDB 4JBM

Entity #1 | Chains: A,B
Interferon-inducible protein AIM2 protein, length: 193 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 40842
95 % 1 1 31002 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 1.3
PDBFlex
90 % 1 1 29676
70 % 1 1 26595
50 % 1 3 7781
40 % 8 15 1660
30 % 8 16 1449
Entity #2 | Chains: R,T
DNA (5'-D(*GP*GP*CP*GP*CP*GP*CP*GP*CP*GP*CP*C)-3') dna, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.