Sequence Similarity Clusters for the Entities in PDB 4JBK

Entity #1 | Chains: A,B,C,D
Interferon-activable protein 202 protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 12788
95 % 6 6 5711 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.9
PDBFlex
90 % 6 6 5712
70 % 6 6 5596
50 % 6 6 5265
40 % 15 15 1672
30 % 15 16 1460
Entity #2 | Chains: E,F,G,H
DNA (5'-D(P*GP*GP*AP*AP*TP*TP*AP*TP*AP*AP*TP*TP*CP*C)-3') dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.