Sequence Similarity Clusters for the Entities in PDB 4J9Y

Entity #1 | Chains: B
Small conductance calcium-activated potassium channel protein 2 protein, length: 102 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 10578
95 % 1 7 10580 Flexibility: Low
Max RMSD: 2.7, Avg RMSD: 0.7
PDBFlex
90 % 1 7 10442
70 % 1 7 9891
50 % 1 7 8954
40 % 1 7 8201
30 % 1 7 7221
Entity #2 | Chains: R
Calmodulin protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 130 100
95 % 9 165 93 Flexibility: Medium
Max RMSD: 18.8, Avg RMSD: 9.7
PDBFlex
90 % 13 178 82
70 % 14 180 98
50 % 14 213 112
40 % 14 336 34
30 % 14 363 47

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.