Sequence Similarity Clusters for the Entities in PDB 4J8B

Entity #1 | Chains: A
coatomer alpha subunit protein, length: 327 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 18840
95 % 3 3 16812 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.7
PDBFlex
90 % 3 3 16476
70 % 3 3 15352
50 % 3 3 13467
40 % 3 3 12099
30 % 3 3 10435
Entity #2 | Chains: B
Emp47p protein, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.