Sequence Similarity Clusters for the Entities in PDB 4J5V

Entity #1 | Chains: A
RNA silencing suppressor p19 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 7 8988
95 % 8 9 6550 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.3
PDBFlex
90 % 8 9 6541
70 % 8 9 6336
50 % 8 9 5919
40 % 8 9 5503
30 % 8 9 4837
Entity #2 | Chains: B
5'-R(P*CP*AP*GP*CP*AP*GP*CP*AP*GP*CP*CP*CP*GP*CP*CP*GP*CP*CP*G)-3' rna, length: 19 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures