Sequence Similarity Clusters for the Entities in PDB 4J3N

Entity #1 | Chains: A,B
DNA topoisomerase 2-beta protein, length: 803 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 10 3607
95 % 2 10 3912 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.9
PDBFlex
90 % 2 10 3971
70 % 2 12 3233
50 % 2 12 3152
40 % 2 17 2483
30 % 2 17 2328
Entity #2 | Chains: C,E
DNA (5'-D(P*AP*GP*CP*CP*GP*AP*GP*C)-3') dna, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: D,F
DNA (5'-D(P*TP*GP*CP*AP*GP*CP*TP*CP*GP*GP*CP*T)-3') dna, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3QX3 1 A, B DNA topoisomerase 2-beta hTOP2beta cleavage core, UNP residues 450-1206 9606 5.99.1.3 | Details
2 4J3N 1 A, B DNA topoisomerase 2-beta HTOP2BETA CLEAVAGE CORE, UNP RESIDUES 450-1206 9606 5.99.1.3 | Details
3 5ZRF 1 A, B DNA topoisomerase 2-beta 9606 5.99.1.3 | Details
4 4G0V 1 A, B DNA topoisomerase 2-beta HTOP2BETA CLEAVAGE CORE, UNP RESIDUES 450-1206 9606 5.99.1.3 | Details
5 4G0U 1 A, B DNA topoisomerase 2-beta HTOP2BETA CLEAVAGE CORE, UNP RESIDUES 450-1206 9606 5.99.1.3 | Details
6 5GWJ 1 A, B DNA topoisomerase 2-beta UNP residues 450-1206 9606 5.99.1.3 | Details
7 4G0W 1 A, B DNA topoisomerase 2-beta HTOP2BETA CLEAVAGE CORE, UNP RESIDUES 450-1206 9606 5.99.1.3 | Details
8 5GWI 1 A, B DNA topoisomerase 2-beta UNP residues 450-1206 9606 5.99.1.3 | Details
9 5ZEN 1 A DNA topoisomerase 2-beta 9606 5.99.1.3 | Details
10 5ZQF 1 A DNA topoisomerase 2-beta 9606 5.99.1.3 | Details