Sequence Similarity Clusters for the Entities in PDB 4J3E

Entity #1 | Chains: A
E3 ubiquitin-protein ligase Mdm2 protein, length: 86 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 10 3958
95 % 7 10 4720 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.9
PDBFlex
90 % 7 10 4738
70 % 43 85 220
50 % 54 103 202
40 % 54 103 225
30 % 54 103 233

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.