Sequence Similarity Clusters for the Entities in PDB 4J2X

Entity #1 | Chains: A,C
Recombining binding protein suppressor of hairless protein, length: 427 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 33786
95 % 4 7 7711 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.3
PDBFlex
90 % 4 7 7660
70 % 5 8 6219
50 % 7 12 4201
40 % 7 12 4020
30 % 7 12 3724
Entity #2 | Chains: B,D
Four and a half LIM domains protein 1 protein, length: 28 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 50420
95 % 1 1 37686
90 % 1 1 35962
70 % 1 1 31979
50 % 1 1 27350
40 % 1 1 24187
30 % 1 1 20584
Entity #3 | Chains: E,G
5'-D(*AP*AP*TP*CP*TP*TP*TP*CP*CP*CP*AP*CP*AP*GP*T)-3' dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: F,H
5'-D(*TP*TP*AP*CP*TP*GP*TP*GP*GP*GP*AP*AP*AP*GP*A)-3' dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures