Sequence Similarity Clusters for the Entities in PDB 4J2X

Entity #1 | Chains: A,C
Recombining binding protein suppressor of hairless protein, length: 427 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 33052
95 % 4 7 7550 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.3
PDBFlex
90 % 4 7 7501
70 % 5 8 6101
50 % 7 12 4116
40 % 7 12 3941
30 % 7 12 3654
Entity #2 | Chains: B,D
Four and a half LIM domains protein 1 protein, length: 28 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 49425
95 % 1 1 36983
90 % 1 1 35323
70 % 1 1 31447
50 % 1 1 26923
40 % 1 1 23814
30 % 1 1 20281
Entity #3 | Chains: E,G
5'-D(*AP*AP*TP*CP*TP*TP*TP*CP*CP*CP*AP*CP*AP*GP*T)-3' dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: F,H
5'-D(*TP*TP*AP*CP*TP*GP*TP*GP*GP*GP*AP*AP*AP*GP*A)-3' dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.