Sequence Similarity Clusters for the Entities in PDB 4J2D

Entity #1 | Chains: A
DNA polymerase protein, length: 901 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 28166
95 % 2 120 244 Flexibility: Medium
Max RMSD: 7.3, Avg RMSD: 3.3
PDBFlex
90 % 2 120 253
70 % 2 120 289
50 % 2 120 338
40 % 2 120 374
30 % 2 120 372
Entity #2 | Chains: T
DNA (5'-D(*TP*CP*GP*AP*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3') dna, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: P
DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*T)-3') dna, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures