Sequence Similarity Clusters for the Entities in PDB 4J2A

Entity #1 | Chains: A
DNA polymerase protein, length: 901 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 49521
95 % 6 120 217 Flexibility: Medium
Max RMSD: 7.3, Avg RMSD: 3.2
PDBFlex
90 % 6 120 226
70 % 6 120 254
50 % 6 120 274
40 % 6 120 294
30 % 6 120 301
Entity #2 | Chains: T
DNA (5'-D(*TP*CP*GP*AP*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3') dna, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: P
DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*C)-3') dna, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.